Pcyl008705.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- ZBTB41
- Assembly
- GCA_949748235.1
- Location
- OX456490.1:2929552-2931461[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0095 0.46 11.0 3.3 2 20 141 159 140 162 0.93 2 13 1.7e-05 0.0008 19.7 2.0 2 23 214 236 213 236 0.96 3 13 0.66 32 5.2 1.9 2 23 244 264 243 264 0.95 4 13 3.1e-06 0.00015 22.0 1.2 2 23 270 291 269 291 0.96 5 13 0.0027 0.13 12.7 0.4 2 23 301 323 300 323 0.94 6 13 0.0061 0.3 11.6 0.5 2 23 331 351 330 351 0.97 7 13 1.3e-05 0.00063 20.0 1.0 2 23 357 378 356 378 0.96 8 13 0.00071 0.034 14.5 3.6 2 23 391 412 390 413 0.93 9 13 0.051 2.5 8.7 5.4 2 23 444 465 443 465 0.96 10 13 9.6e-06 0.00046 20.4 0.9 2 23 471 493 470 493 0.97 11 13 0.25 12 6.5 3.2 2 23 502 522 501 522 0.96 12 13 1.3e-06 6.1e-05 23.2 0.7 1 23 528 550 528 550 0.99 13 13 0.0016 0.079 13.4 0.9 1 23 556 579 556 579 0.95
Sequence Information
- Coding Sequence
- ATGGATTTGAAAAAACTATGTAGAATTTGCCTTCGTATTCCAAAACGATCCGTGGACCTGTTCACAAATGAAGAGATCTTGTTAAAATTGGACATTATTGCTTCAATTAAGCCGGAAAAAGCTAAAGATCTTCCAGATCAGATTTGCGAAGAATGTTCAAAGAACGTGAATTTCGTTTATAAATTTCGAAAACTAATTGTAAATACTGAAGATGATTTACAATCAAGGCTCGAAACACTGAAACAAACAAACTACACATCCAAACCGAGAACAGCATATCATAAAGGAAACGATATTAAAGGTTTTATTAAGGAAGAATTTGTGTCGGATGCCGAAAGCGATCTAAGCGAATCGGTACTAGAAAATCTTTCTAGAATTAATGATGATGCAGTTGAAGATTCAAAACGAAAATGTATTTGTCGATGTAATGAATGTGATTTAATTTTCGATTCAAACGATGAATTACAAATTCATAGATATTGCCATCACAGTGAACTTGGAACTAGTGTAACTGCATATAATATAACGGCTGCTGAAATAAAATCGCACATGGAATTAGAATCGGACAGCCCATCTGATATGTTACATCAATCTGATTCTGAAAAACAAGATGAAACGAATTCCAATAAAACTAGAAAGTCATGTGAAGAGTGTCACAGAGTATTTAGATCAAAATATCAACTATTGGTTCATAAACGTATTGTTCACGGTGAGGACTTGCCTAAGAAGAAATGCCATATATGTGGCATAGAAGTACATTATTACGGCATCTCAAAACATATTCGATTACATTCTGCGAAACCATGTCGATGTGAAGTATGtggaaaagttttaaaaaattccGGTTCCCTAACCAGTCACATGAAAGTCCATTCAAATGCAGGCAATAAACGAACTAGTAAATGCAAAGAGTgtgaaattgttttttattcaaCATATCAATTATTGATTCATAAAAAAGATGCGCACGGTCATGCTTTGCCTAATAAACGGTGCACCATATGTGGATTGGAGGTGCGTTATTTTAGCTTAAAAGCCCATATGCGATTGCATTCAGCGAAACCATGTCGATGCGATATATGtggaaaaatgttaaaaaatccATCCACATTATCAGGTCACATGAAAATACATTTCAATGGTAAAcgtaaagttaaaaaaatcaaatgtcAATGCGATCAGTGTGGAAAAGTCTTTGATTCATCTGGAAGCTTAGATTATCATAAAAATTACCATCATAAACCCAAGGCAGTGTGTAATATATGCGGTGCACAAATGGTTTCCTGCAGTTTACCGCAACATATGAAAATCCATTTGGAGGAACCTTGTCGATGCAAAGAATgtggaaaattattgaaaaactCCGGATCGTTACGATGCCATATGAAACTACATACAAATGTAGAATCTACGTGTAACATTTGTGGTAAAATGTTTAATGTAAGACGACAATATCTGTCACACATGCGTGTCAACCATGGAGATCCGGATTATCTTAAAAAAAGTTGCCATCTATGTGGTTTAAAACTGAGAGGCAGTAGTATGAAGAGGCACATGTTAAAACATACTGGCGAAAGACCATATGTTTGTTCGCATTGTAATAAGGGTTTAACCAGTCCATATGCATTGAAAGTTCACATGAGAATTCatacaaaagaaaaacctTATTTGTGTGAATTTTGTAGTAGTTCATTCCCACAGCGGGTGTCGTTGCGTACACATCTGAAACGGGAGCATGGCATGTCATTAGTTGGGGATAAATAtacgaaattataa
- Protein Sequence
- MDLKKLCRICLRIPKRSVDLFTNEEILLKLDIIASIKPEKAKDLPDQICEECSKNVNFVYKFRKLIVNTEDDLQSRLETLKQTNYTSKPRTAYHKGNDIKGFIKEEFVSDAESDLSESVLENLSRINDDAVEDSKRKCICRCNECDLIFDSNDELQIHRYCHHSELGTSVTAYNITAAEIKSHMELESDSPSDMLHQSDSEKQDETNSNKTRKSCEECHRVFRSKYQLLVHKRIVHGEDLPKKKCHICGIEVHYYGISKHIRLHSAKPCRCEVCGKVLKNSGSLTSHMKVHSNAGNKRTSKCKECEIVFYSTYQLLIHKKDAHGHALPNKRCTICGLEVRYFSLKAHMRLHSAKPCRCDICGKMLKNPSTLSGHMKIHFNGKRKVKKIKCQCDQCGKVFDSSGSLDYHKNYHHKPKAVCNICGAQMVSCSLPQHMKIHLEEPCRCKECGKLLKNSGSLRCHMKLHTNVESTCNICGKMFNVRRQYLSHMRVNHGDPDYLKKSCHLCGLKLRGSSMKRHMLKHTGERPYVCSHCNKGLTSPYALKVHMRIHTKEKPYLCEFCSSSFPQRVSLRTHLKREHGMSLVGDKYTKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -