Basic Information

Insect: Platypus cylindrus
Gene Symbol: -
Assembly: GCA_949748235.1
Location: OX456491.1:9595989-9599263[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.44 21 5.8 0.3 8 23 282 297 274 297 0.84

2 14 3.1 1.5e+02 3.1 0.5 6 21 307 322 307 323 0.93

3 14 6.8 3.3e+02 2.0 0.5 1 20 368 387 368 391 0.71

4 14 1.7 81 3.9 1.6 3 20 423 440 421 445 0.82

5 14 5e-05 0.0024 18.2 1.3 3 23 451 471 450 471 0.98

6 14 4.3e-06 0.00021 21.5 3.8 1 23 477 499 477 499 0.98

7 14 0.0068 0.33 11.4 1.6 1 23 504 527 504 527 0.90

8 14 5.9e-05 0.0029 17.9 0.4 2 23 548 569 547 569 0.97

9 14 0.022 1.1 9.9 1.9 1 23 575 598 575 598 0.95

10 14 2e-06 9.6e-05 22.6 1.9 1 23 601 623 601 623 0.99

11 14 1e-05 0.00049 20.3 0.5 1 23 631 653 631 653 0.98

12 14 1.2e-07 5.9e-06 26.4 0.9 1 23 659 681 659 681 0.96

13 14 0.00012 0.006 16.9 0.8 1 23 687 709 687 709 0.99

14 14 0.016 0.79 10.3 5.7 1 23 715 738 715 738 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.44	21	5.8	0.3	8	23	282	297	274	297	0.84
2	14	3.1	1.5e+02	3.1	0.5	6	21	307	322	307	323	0.93
3	14	6.8	3.3e+02	2.0	0.5	1	20	368	387	368	391	0.71
4	14	1.7	81	3.9	1.6	3	20	423	440	421	445	0.82
5	14	5e-05	0.0024	18.2	1.3	3	23	451	471	450	471	0.98
6	14	4.3e-06	0.00021	21.5	3.8	1	23	477	499	477	499	0.98
7	14	0.0068	0.33	11.4	1.6	1	23	504	527	504	527	0.90
8	14	5.9e-05	0.0029	17.9	0.4	2	23	548	569	547	569	0.97
9	14	0.022	1.1	9.9	1.9	1	23	575	598	575	598	0.95
10	14	2e-06	9.6e-05	22.6	1.9	1	23	601	623	601	623	0.99
11	14	1e-05	0.00049	20.3	0.5	1	23	631	653	631	653	0.98
12	14	1.2e-07	5.9e-06	26.4	0.9	1	23	659	681	659	681	0.96
13	14	0.00012	0.006	16.9	0.8	1	23	687	709	687	709	0.99
14	14	0.016	0.79	10.3	5.7	1	23	715	738	715	738	0.98

Sequence Information

Coding Sequence: atgaatgAGCACAGTGTTAATTTAACGacaataagtaattttaatacaatttgTCGAGTGTGTTTAAACGAAAATGAAAATCTACAGTTTATTTGGGAAGTTTATGTGCAAAACGAACAAGAACAGCAAAAGGAACAGTTGAATTTAtcaaaattgtttaaaaaatattgtaatatagAAataaaatcaACAGATGAGAAGCCAGAAAAAATATGCAGTGCCTGTGCATCACAATTTATTCAATGCCATTGTTTTTTCGAAAAAGTCTATTGGTCAAATAGTCTTCTAAATAATATTGTACAGTCAAAAGAATCACAACTTGACGTTAAGTTCGACGacaatgatttaaaaaaaaatcttcgcAGGAAAAGTAACTCAAATACTACTAGCGACAATTATTTGGACATATCAGAAGATGATGCGATCCAAAACGATAATGAGAACGATGATTCAGATTGGGAACCATCAAAAATTGAAGATAAAAATGAATCGGCAGTTAAACTTGAATGCTCGCCCGAGTATAATTATGTAAAAGATAATGATATAAAAGCTGAGAAAGAAGCAACATCTTCAGAAGAggaatttgaatataaaaggATTTCCAgaaaaaGGAAATGTCAAATTACGCGAACATTACCACGGAAAAAAGGAAGAGGCCGCCACCAAGCAAAAATGTCTAgtagaaaaatgtataatCAATCCATAAATGAGACATCCCATGGTATTTTTGAGTGTagattttgtaaaaaatacctcaatgaaataaataatgccGTTGATCACTATGATGAATGTCATGCACCTGAATTAGAACAAGATCAATGCATACTATgcgataaaacaaaaatttacaaGCAAAGAGATAATCTTTTATATCATATGGCGCTGCATTGGAAAAATAGCATAAAATGTATACCCTGCCgtaaatattttcgaaatcACGATATGCTTTTGGAGCATAAAAAGGAATGTTTCAAATGTCCAGaaatcaaaattgaaaattacatTGATAAAGCAGATATTTctcaaaataagaaaaatatcgAAATGTCGTCACATAACCAAATCATTGCATTAACGATGAAACAAATTGATGGTGCATTTAAATGTCAATTATGTTCGAAGAAACTTGGCGAATTCAATTCCGTTCTTGATCATTATGACAGCGATCATACGAACGAATTGCAATGTATATTATGTTTGAGAGCATTCACAAAATATGTGCCATTATTCCATCTAGGATTACATTCGAAAAAGAGCCATCTTTGTAGGCCATGTAAAAAAATTTTCCGAACACAAGAGAAACTTGATGAACACAATAGTAAATATGATCACGATAGATCGCGGGCATGTAAAATTTGTGGAAAAACATTTTCAggaaattataaaaagAACAAGCATATGCTCAGTCATTTTcaggaaaaaaattattcttgCAGTAAATGTGGGAAAACCTTCACCTATAAAACAAGTTTATCGAGgcattttaaaattcattttggAAAAAGATTCTTGTGTTCCTCTTGTGGAAATTCATATACAACGAAGTTTATGTTACAAAGGCACTTTACTATAATGCATACAAATGTTGATGATAATGGAAAGCCTTTGCCTAAACCAcCACCAGTTCCTGTAAATCTTCAATGTGAATTTTGTGGTGAAATATTTACTTCGAAAACTGGTTATGGACGACATATTAGACGGCATCctcaatttaatcaatacaattGTAAAATATGCTCATTTATATGTGATAACAAGgaacAATTAGATGATCATATGGAgcaaaaacataataaatacacatGCGAGGAATGTGGAAAACGATTTCCATTTGAAAGTCAATTAAAATCGCATTTTAGAAAACACGAAGACAtgacaatatcgaaatttcgATGTGATGTATGTGGCAAAACGGCACGCACACGTCAACAATTAGAAATTCATTATCGAATTCATACGGGTGAAAGACCATTTCCATGTGATATATGTGGAAAATCGTTTAAGCAAGCCGCACATCTCAAGGTTCACATGTATCAACATACCGGCAAAATGccttttaaatgtaaaatgtgTGATAAAGCCTTTCCTTTTCAAACTATAATGGAAATTCATATGCGCACACATACAGgAGAGAAACCATTTCAATGTCGTTACTGTGGTAATGCGTACCACGATAGAACCACTATGAAGAAACATCAGAAGAAAAAACATCCAGAAATGCCTGTAGAGAAAGTGATTCGTGGCGAATATCGCAGAACtcaaataatgtaa
Protein Sequence: MNEHSVNLTTISNFNTICRVCLNENENLQFIWEVYVQNEQEQQKEQLNLSKLFKKYCNIEIKSTDEKPEKICSACASQFIQCHCFFEKVYWSNSLLNNIVQSKESQLDVKFDDNDLKKNLRRKSNSNTTSDNYLDISEDDAIQNDNENDDSDWEPSKIEDKNESAVKLECSPEYNYVKDNDIKAEKEATSSEEEFEYKRISRKRKCQITRTLPRKKGRGRHQAKMSSRKMYNQSINETSHGIFECRFCKKYLNEINNAVDHYDECHAPELEQDQCILCDKTKIYKQRDNLLYHMALHWKNSIKCIPCRKYFRNHDMLLEHKKECFKCPEIKIENYIDKADISQNKKNIEMSSHNQIIALTMKQIDGAFKCQLCSKKLGEFNSVLDHYDSDHTNELQCILCLRAFTKYVPLFHLGLHSKKSHLCRPCKKIFRTQEKLDEHNSKYDHDRSRACKICGKTFSGNYKKNKHMLSHFQEKNYSCSKCGKTFTYKTSLSRHFKIHFGKRFLCSSCGNSYTTKFMLQRHFTIMHTNVDDNGKPLPKPPPVPVNLQCEFCGEIFTSKTGYGRHIRRHPQFNQYNCKICSFICDNKEQLDDHMEQKHNKYTCEECGKRFPFESQLKSHFRKHEDMTISKFRCDVCGKTARTRQQLEIHYRIHTGERPFPCDICGKSFKQAAHLKVHMYQHTGKMPFKCKMCDKAFPFQTIMEIHMRTHTGEKPFQCRYCGNAYHDRTTMKKHQKKKHPEMPVEKVIRGEYRRTQIM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -