Pcyl012712.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456493.1:949955-952548[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.21 10 6.7 1.1 1 23 75 99 75 99 0.92 2 13 0.022 1.1 9.8 0.9 5 23 107 126 104 126 0.91 3 13 0.074 3.6 8.2 1.6 3 23 132 154 129 154 0.86 4 13 0.0088 0.43 11.1 1.9 2 23 157 179 156 179 0.93 5 13 9.6e-07 4.7e-05 23.6 0.2 1 23 189 212 189 212 0.97 6 13 1.2e-05 0.00058 20.1 2.7 1 23 217 240 217 240 0.94 7 13 9.5 4.6e+02 1.5 1.2 1 19 254 274 254 278 0.63 8 13 0.0036 0.18 12.3 0.3 1 21 283 303 283 307 0.91 9 13 0.00011 0.0053 17.1 1.5 1 23 310 332 310 332 0.98 10 13 8.7e-06 0.00042 20.6 1.0 2 23 359 380 358 380 0.97 11 13 0.00018 0.0087 16.4 5.3 1 23 386 408 386 408 0.98 12 13 0.00027 0.013 15.9 2.0 2 23 415 436 414 436 0.97 13 13 1.6e-05 0.00076 19.7 1.3 1 23 442 464 442 464 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGTCACACCATTAAGAAAGAAAAGGGAGTTTCAACAGACACTATTGCTATATGCAGGGCTTGTATGGAAACTGAACGATTACAAGATATGAATGAAATTATCATTGATGATATAAATGCCGTTGAAGTTTTCGAAAAAGTATCCAATTTAAAAGGTATAAAGGCAagttacaaaacaaaaacaataaataagcTATGTAAACAAGACAGTGAAATCTTCAAATGTACAAAATGTAATGAAAAACCCTATGAAAATTATCAGGCTCTAGAAACACATTTTATGGAAAAACACGAGTTGGATTCCGAatgtattttatgtaaaaaacAATTCACTAGTTCCTTAAATCTCATTTATCATTTGAAATTGAAACatggaaaattgaaatgttGTCGCCTATGTTTAgttagttttaataatttcgatCAATTAATGGCACATTATAAGTCTGAAGAACATAATACAAAATGCATCATATGCAACGAACAatttagAAATCGTAAGGCGCTGTATGAACATCGTCGGAAGAAGCATTTAAATCCGCAActattaaatatgaaatttaaatgtCCTGAATGTCCTAAGGAGTTTGCCAATCAAAATAATATACGAAGACATATTCTAGTATCGCATAATGATGTGCGATTTTTATGTGATACTTGTGGTCAAAGTTTCACAACCAACAGGAATTTGCAATTACATATACTCAAATGCCACAAAGGcatattaataaaaacgaaaaataatcaaaagaATTTCTTCTGTGATACCTGTGGACGTGAATTGAAGATTTTCCACAAATATTCAATTGCAATGCATAAAGCAAGGCACGATGGGCATAATTACGTGTGTAAACGATGTTTTGAATCATTTCCAACCGAGGAACTCCTCAATAGCCACGAACAAGAAAAAGGGCATCATTTATTCAAATGTTTACAGTGTCCTTCGCGATTTGTACgcgaagaaaatttaaaatcacaTCAAAAGAATCACGAAACACCCGGATGGaataagaattattttatacgtTACGGCAAGTCAGCAAAATACCGAAATGAAAAAGGCGAACTTGAATGCACCTATTGCCCAAAAGTATTCAAAGATAAACAGCGTTTCGATAATCATATGCGTGTTCATACTAATGAACGTCCATACAAATGTCATATTTGTCAGAAAGGTTTCAAAACATGGATACATCGACGAACACACGTGAACAGTCATTTAGGTATAAAAAAATGGCAGTGTCGTTACTGTCCGAAAGCATTTACATATTCATGCACGTTAAAAGGACACGAAATGACACATACAGGTGAACGTCCATATAAATGCACCGAATGTAATAAAGGTTTCATTACAATGTCGGCAATGAAGAAACACAAACAAGTTCATTTCAAACTAATGATATGTGATAGGAATCAAAAAAATCCATGGAGTAGTGGTGgtgaaaagaaaatggtagTAAACGACGAGGGACCTACTGTAAATGATAttagttataataaatataatatttatttaaataatgttaattataataattattcaaatactCCTAGTAAGTGA
- Protein Sequence
- MESHTIKKEKGVSTDTIAICRACMETERLQDMNEIIIDDINAVEVFEKVSNLKGIKASYKTKTINKLCKQDSEIFKCTKCNEKPYENYQALETHFMEKHELDSECILCKKQFTSSLNLIYHLKLKHGKLKCCRLCLVSFNNFDQLMAHYKSEEHNTKCIICNEQFRNRKALYEHRRKKHLNPQLLNMKFKCPECPKEFANQNNIRRHILVSHNDVRFLCDTCGQSFTTNRNLQLHILKCHKGILIKTKNNQKNFFCDTCGRELKIFHKYSIAMHKARHDGHNYVCKRCFESFPTEELLNSHEQEKGHHLFKCLQCPSRFVREENLKSHQKNHETPGWNKNYFIRYGKSAKYRNEKGELECTYCPKVFKDKQRFDNHMRVHTNERPYKCHICQKGFKTWIHRRTHVNSHLGIKKWQCRYCPKAFTYSCTLKGHEMTHTGERPYKCTECNKGFITMSAMKKHKQVHFKLMICDRNQKNPWSSGGEKKMVVNDEGPTVNDISYNKYNIYLNNVNYNNYSNTPSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -