Pcyl014963.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456494.1:9008287-9009766[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0033 0.16 12.4 0.1 2 23 51 72 50 72 0.92 2 12 0.22 10 6.7 0.6 1 15 106 120 106 128 0.77 3 12 0.0022 0.11 13.0 4.1 1 23 134 157 134 157 0.98 4 12 0.0068 0.33 11.4 3.4 1 23 169 192 169 192 0.90 5 12 0.00012 0.0058 17.0 0.2 3 23 201 221 200 221 0.98 6 12 2.5e-05 0.0012 19.1 0.2 1 23 227 249 227 249 0.99 7 12 0.0006 0.029 14.8 3.4 1 23 255 278 255 278 0.97 8 12 0.044 2.1 8.9 7.9 1 23 292 314 292 315 0.93 9 12 7.1e-05 0.0034 17.7 0.1 2 23 325 346 324 346 0.97 10 12 3.4e-06 0.00017 21.8 1.2 1 23 352 374 352 374 0.94 11 12 0.0019 0.091 13.2 1.3 1 23 380 402 380 402 0.97 12 12 0.00019 0.0093 16.3 0.3 1 22 408 429 408 429 0.97
Sequence Information
- Coding Sequence
- ATGACAACTAGTGAATGCGAAAATTCCGATGACGATTCCAAGCAtgatataatagatataaaacaGGAACCAATACGTGAAACCCAACCAACGTCCCTTACAAATGGAGAACTTAAGAATCAATATCAAACCTTAGCTAATCAAAGAATACAGTGCGATATTTGTAATgaaacatataaaaataatgttgaattTGCCTTACATTCAATTGAGCATTCAAAGGATAAAAAGTACTCCTGTCATTTATACGATTATCGAAATGTATCGAAGTATTATACGGAGATGCATATGCGCGAGCATGAAAGCTCAGCGAGATTCAAATGCGAAACATGTCAAAAGGAATTTGCAGTCAGTCTGGATGCAGTCGAACATAAATATTTCCATACTGGCGAAAGGCCATTTGAATGTGAATTCTGTGGAAAACATTTCATGTTTTCAAGACGTTTGGCATCACATCGACGAATGAAACATTGGGAAAATGTTACTGGCATTCTATCGACTAAATACGATTGTACAATTTGTAAAATACATTATACGTCAGCTACGGCCTTGAAGCGgcataatttacataaacACAATCCAGGCGATCATTCTGGAATTTGTGAAATATGCGGCAAACGAATAGCGAATAAGGCGAAATTACCTCGTCATATGCGTACGCATACTGGTTACAAGCCATACAAATGTGAAATCTGTAGTGAAACATTCTCAGGACGGAGAGGTCTAGCAGGTCATATGCGCCTTCATACTGGCGAAAAGCCATATCAATGCGAGTTGTGTGGGTGTAAATATAGGATATCATCCAGTTTAACGAGCCATCGACAGAGCAAACATCCGCAACATTATCCTAAAAAGGAGGTACCTGCGGATAAAtatgattgtaaaatttgtaataaacATTATAGGACACAAACAGGATTACATTATCATAATACAAGCCATCATGGATTAAAGACAGCTGTCACGCCCATCGTTTGTGACACCTGTGGAAAAATATTATCATCAGAATACCAATTAATTATTCATCGTCGCATTCACACTGGTGAAAAGCCATTTAAATGTGAAGTTTGCGAGAAGTCATTTTCAAGAAAAGAACAACTAAAAGAGCACGATCGTGTGCATACTGGTGAAAAACCGTTTGTTTGTCGATTTTGTGGCAAAGGTTTCACGCAACGCACCCCACGGCGTTTACATGAACGTATGCATACTGGTGAACGACCGTACAAATGTAATTTATGTCAAAAAGGGTTCATTTCGAAAGCGGCAATGGACACACATATGAAAACTTGTTCAGTCAATGTGAAAGTTGGCAAATAG
- Protein Sequence
- MTTSECENSDDDSKHDIIDIKQEPIRETQPTSLTNGELKNQYQTLANQRIQCDICNETYKNNVEFALHSIEHSKDKKYSCHLYDYRNVSKYYTEMHMREHESSARFKCETCQKEFAVSLDAVEHKYFHTGERPFECEFCGKHFMFSRRLASHRRMKHWENVTGILSTKYDCTICKIHYTSATALKRHNLHKHNPGDHSGICEICGKRIANKAKLPRHMRTHTGYKPYKCEICSETFSGRRGLAGHMRLHTGEKPYQCELCGCKYRISSSLTSHRQSKHPQHYPKKEVPADKYDCKICNKHYRTQTGLHYHNTSHHGLKTAVTPIVCDTCGKILSSEYQLIIHRRIHTGEKPFKCEVCEKSFSRKEQLKEHDRVHTGEKPFVCRFCGKGFTQRTPRRLHERMHTGERPYKCNLCQKGFISKAAMDTHMKTCSVNVKVGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -