Pcyl007765.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456489.1:12711186-12722502[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00013 0.0064 16.8 2.6 2 23 177 199 176 199 0.96 2 17 0.3 15 6.3 0.5 1 20 422 441 422 443 0.94 3 17 0.15 7.2 7.2 3.9 1 23 472 495 472 495 0.92 4 17 2.1e-05 0.00099 19.4 1.1 2 23 632 653 632 653 0.97 5 17 0.022 1.1 9.8 0.3 1 23 674 696 674 696 0.94 6 17 0.0043 0.21 12.1 0.9 5 23 703 721 700 721 0.93 7 17 4.2e-05 0.002 18.4 1.4 2 23 758 780 757 780 0.94 8 17 2.4e-05 0.0012 19.1 1.8 2 23 833 855 832 855 0.95 9 17 0.0055 0.26 11.7 2.3 2 23 866 887 865 887 0.97 10 17 5.1e-05 0.0025 18.1 4.0 1 23 928 950 928 950 0.98 11 17 0.052 2.5 8.7 0.3 2 23 967 989 966 989 0.89 12 17 0.042 2 9.0 0.2 1 20 1000 1019 1000 1022 0.90 13 17 0.027 1.3 9.6 0.2 1 23 1066 1089 1066 1089 0.95 14 17 0.15 7.4 7.2 2.0 3 23 1101 1121 1100 1121 0.96 15 17 0.00017 0.0083 16.5 0.4 1 23 1146 1169 1146 1169 0.95 16 17 0.018 0.85 10.1 0.1 3 23 1173 1193 1171 1193 0.96 17 17 0.0018 0.087 13.3 0.5 1 23 1206 1229 1206 1229 0.91
Sequence Information
- Coding Sequence
- ATGGCTGAGAATCGAGAGAATTATCAAGTTCCCGGGTGTAGGCTCTGTTTATCAGATAAATTTGATACTCTAAAAccaattttttctaatgaacTTGGCCCAAACAGTATTCCTCAAAAAATACAGCAACTACTTCTTATTCAGGTGCAAAAAGAAGATAAATTATCCACCCTGATCTGCAATGAATGTATAATCAGATTGGATACTTGGCAATCATATAAAACACAATGCTGtagaaatcaaattaaattattggaattttataataaaaaaataaaaactgagACGCTATTAGAAATGAATATGTCTGTAAAAACCGAATTGGAAGATTTTGAATCTAGCGATACAGATGAGGTAACTTTGAATGAAACTGCAATGTTGCCAGTTAAAGTTGAAGTTGATGAAAATACAGGGACGAAAACATATAGTGAGTTACCTCCAATTTTAACTCCAAATAATATGGGACCGATTGATAAATCCATTAATCATGCAATTGCATCCAATACGCTTCAAACTGATGAAAACAAGACATGCCCTGAATGTGGCCGGACTTTTTGTTCAGTATACAGCATGAAACGTCATAAAAAAGttatacacaaaaaaaagcgatctaaaagcaataaattaaGCAAGGCATCTTTAATTATTGACAATTCGAATCTTACAAATAGATTTCAAAATGAACTTGCAAATACTAGTTTCGATTCCACTAACGATTTTATGAAATATGAATCTCCACAAATTTCACAATGCAATAACGAGTTCTTTCGCTTTGCCTTTTTAATTATgctaattttaaagaaatataacaggatagaaaatccaaaaaagcCAAGTAAACTTATATCtgtttttattacattaaatatttGCTGTAGATTAGTATTTATTACACTAATCAGTAATGTTTTAATGATCAACAAAAACAACATTAATAATGATCAAAAACTTTTTGTAGATTCCAATGAAAGTATTGAAATGGAAATAGATCAAAACTTACTAAATAATCAGAGTGCAGAACAGCAACCAGTTAGAAATTTGTCTCCGCTCGAAGAAAAAGTTCAATTCGCTGCTGTTTTAAAGCTTACTCAAAAACATCCTTTAGGAACCATCCTTTCTAAAGTTGAATTGAGTTATATGGAAAAATGTCGAGCTATGGTTTCCATGTTCAACACCCATAAATGCGCTTGTCATAATGTCCAGTATAATTCATTACGGAACCTTTTATCTCATTTAAAACAAGTAAAATCATGGTTCCCATTATTTACTTGCTACAGTTGCATGATCTCGTTTACTGACAGATCAGCATTTACTGTTCACTATGGCAAATGTCCACGAAGCTCTTTAGAAACTCTAAAGAAGTtatcaaatttaaaaagaCGAAGCGAAAATAAAATCAGACTTTATCAAAATTTCAAGTGTAATTTGTGCAGATTTGTATACAGCTTTTATGATGATTTTTGCAGGCATGTGTCTGATGAGCATGTCATTGGTGAAGCACCTTTTAACTGTTCTTGCCAACGACAGTTTGACACTGCCGAAGATTATAAAAATCACTGCATTAAGTCATGTGTTTTATCGTATTATTGTGATATTTGCTATTCTACATCTTTTACAATTGATGAATTTTTGAAGCATTGTCTAGAAAATCATGATGCTTCTGAGGGTTTCACATTACTTCAAAAGAGTAACGCTGTTAGAAAATCCTGGCCAAATAGAGAGACTGTTGACGCAGCAAATATGGTTTACGGTAAACGGGATCGTAAAAAATCCGTTAAACTACCGAATTCAAAGGAAGTTTCAGGAGAAAAAACGCATATTTCGCCTAGTTTAGTCCGTAAACTTTTAAATATGGAAGAACGCAGGTCCGGAGTCGAATGGAAACAACCAGCTGTTTGTCCTTACTGTAATAAATTGTTTTCGAGCGCTCACAATATGGCAAGACATTACAGGATCCATTTGGAAAAGAACGAAGTACCCTTGACACCTGTGGTATCAACAAGACAAGATGAGAGTTTTTATTCTTGTCCAGATTGTCCTGGGATGTTTAAATCTTCCGAGTGGAAAACTCATCTTGAGAAATACCATCCTCCAAAAAATTGTATAGATTGCAATAAAGTGTTTAGATTTCAAAGCGAATTAGATGAACATAAAAAATCGCATTTAAGTGTTACACTTTATAGGGATTCTAAAACAAATTCCTACAAAATAACTCCTAGCCCTGAAGCAGAAGCATCGAAGAATAAAAAACTACCAAGGGAAGTAATGGTTTCATGTGATATATGTGATATTATGTTCACCAATAAGGATGATCTTAAGAAACATAAGCAGTTATGCCACAAAACTTTCAATAATTTTACTATATCGACAGAAACATTAGAAACAACTACCCATTCAGAAACGGATTTGCCTATTTTAGAACCGATAATAGATATAGAAGAGGCCAAAGATAAGCAGGGTAATATTCTTTCGGTTAGTCTTCCTACAACTCTAATATCATGTGACGAATGTGGTAAGGAATATTCTACGaaaaaaagtttgaaacaacataaaagaaataaacatGGACTAAATAGAGATATACAGTTTCCAAAGAAATGTGATTACTGTGACAAAATGTGCTCTACAGGAGCATCTTTATACTTGCATACACAAATGCATGAACGAAGAAATGATCCACCTGTAACGATTCCTCTAAAGAGAAGTAAGCCGGAAAAGATGCAAAATATAAAGCTGGAAGATTTAGACTTTGAAGATGCTCCTTCAGTAGAAGAATCGTATTACACATGCAATCGGTGCTTTAAAGTATTCGCTTCAaaatttaaactgaaaaaACATATGAGCTCTCACGGAAATCAGAAAAAATCACCAAAATTGTTAGACAAAACAACGAAAATAAGTTGCGGCATTTGTCACATTTCTGTTGATAATAAAGCAGCACTAAAACAACATAAAATAGATAAACATAGGTTAAATTTGGATACTAAAGACAAAGCTTTTaagtgtccttcttgtcctaAACTGTTTAAAACATTAGCAGCAATGTCGACCCATAGTGGATGGCATACACGAAATGGAACTAAAGTAGATTCGCCGGTACCCAACACTCCACAAGCTAATGCAGCTGCTAAATTGATTAAACATACAAAAATATTGAGTAAGATTTCGGGTAATGTGAAAACTGAAACAAAGGAATTTGAATGTACCACTTGCTTACTGCGCTTTGGAAATGAAACTGCATTACAGATTCATATCTTACAAAAACATCGAGATATCGATGCTAAAATGCTTGTACCTCATTGCGCTACATGTAATGAAGATTTTAAAACTCAAACCGCTTATGATATACATAAGCGAtatcataatttattagaaagaCAACATCAACAATTTCCGGAAAATCAAGACACTTCAAGTTTAGAGAAAAATAAGCCATATGTTTGCAAATTGTGCAATATCAGTTTTAGTCGATGGAATGTATTAAAAGCTCATGAGAAATTATACCATGAACTTGCATGTGAAAATTGTCCAGCAGTATTTCTAAAACGCAGTTCACTAAATGCTCATGCTAAAACGCATACTACACAAAGGAAAAAATCCAATAGTAGAAATGGTTATTCTTGTTCTATTTGTAAAGCGTCATTTAGTTATCGCAATGAATTGGTAACTCATACAGTAAATGAGCATCCATTTTGA
- Protein Sequence
- MAENRENYQVPGCRLCLSDKFDTLKPIFSNELGPNSIPQKIQQLLLIQVQKEDKLSTLICNECIIRLDTWQSYKTQCCRNQIKLLEFYNKKIKTETLLEMNMSVKTELEDFESSDTDEVTLNETAMLPVKVEVDENTGTKTYSELPPILTPNNMGPIDKSINHAIASNTLQTDENKTCPECGRTFCSVYSMKRHKKVIHKKKRSKSNKLSKASLIIDNSNLTNRFQNELANTSFDSTNDFMKYESPQISQCNNEFFRFAFLIMLILKKYNRIENPKKPSKLISVFITLNICCRLVFITLISNVLMINKNNINNDQKLFVDSNESIEMEIDQNLLNNQSAEQQPVRNLSPLEEKVQFAAVLKLTQKHPLGTILSKVELSYMEKCRAMVSMFNTHKCACHNVQYNSLRNLLSHLKQVKSWFPLFTCYSCMISFTDRSAFTVHYGKCPRSSLETLKKLSNLKRRSENKIRLYQNFKCNLCRFVYSFYDDFCRHVSDEHVIGEAPFNCSCQRQFDTAEDYKNHCIKSCVLSYYCDICYSTSFTIDEFLKHCLENHDASEGFTLLQKSNAVRKSWPNRETVDAANMVYGKRDRKKSVKLPNSKEVSGEKTHISPSLVRKLLNMEERRSGVEWKQPAVCPYCNKLFSSAHNMARHYRIHLEKNEVPLTPVVSTRQDESFYSCPDCPGMFKSSEWKTHLEKYHPPKNCIDCNKVFRFQSELDEHKKSHLSVTLYRDSKTNSYKITPSPEAEASKNKKLPREVMVSCDICDIMFTNKDDLKKHKQLCHKTFNNFTISTETLETTTHSETDLPILEPIIDIEEAKDKQGNILSVSLPTTLISCDECGKEYSTKKSLKQHKRNKHGLNRDIQFPKKCDYCDKMCSTGASLYLHTQMHERRNDPPVTIPLKRSKPEKMQNIKLEDLDFEDAPSVEESYYTCNRCFKVFASKFKLKKHMSSHGNQKKSPKLLDKTTKISCGICHISVDNKAALKQHKIDKHRLNLDTKDKAFKCPSCPKLFKTLAAMSTHSGWHTRNGTKVDSPVPNTPQANAAAKLIKHTKILSKISGNVKTETKEFECTTCLLRFGNETALQIHILQKHRDIDAKMLVPHCATCNEDFKTQTAYDIHKRYHNLLERQHQQFPENQDTSSLEKNKPYVCKLCNISFSRWNVLKAHEKLYHELACENCPAVFLKRSSLNAHAKTHTTQRKKSNSRNGYSCSICKASFSYRNELVTHTVNEHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -