Basic Information

Insect: Platypus cylindrus
Gene Symbol: -
Assembly: GCA_949748235.1
Location: OX456488.1:5228692-5232510[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.19 9.4 6.9 1.4 6 21 12 27 6 28 0.86

2 15 0.16 7.8 7.1 0.0 3 20 35 52 34 54 0.94

3 15 0.97 47 4.7 0.5 1 12 129 140 129 149 0.79

4 15 0.97 47 4.7 5.0 1 21 272 292 272 293 0.94

5 15 0.0005 0.024 15.0 0.3 1 23 315 337 315 337 0.99

6 15 0.00027 0.013 15.9 2.4 1 23 356 378 356 378 0.97

7 15 0.091 4.4 7.9 1.6 1 23 409 430 409 430 0.92

8 15 0.00027 0.013 15.9 0.7 3 23 438 458 437 458 0.95

9 15 8.1e-05 0.0039 17.5 0.3 1 20 464 483 464 485 0.93

10 15 0.011 0.51 10.8 3.6 1 23 492 514 492 514 0.98

11 15 2.2e-06 0.00011 22.4 2.4 1 23 520 542 520 542 0.97

12 15 9.5e-05 0.0046 17.3 2.8 1 23 548 570 548 570 0.98

13 15 1.7e-05 0.00084 19.6 0.6 1 23 576 598 576 598 0.98

14 15 0.00075 0.036 14.5 1.7 1 23 602 624 602 624 0.97

15 15 0.00023 0.011 16.1 0.1 1 23 632 655 632 655 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.19	9.4	6.9	1.4	6	21	12	27	6	28	0.86
2	15	0.16	7.8	7.1	0.0	3	20	35	52	34	54	0.94
3	15	0.97	47	4.7	0.5	1	12	129	140	129	149	0.79
4	15	0.97	47	4.7	5.0	1	21	272	292	272	293	0.94
5	15	0.0005	0.024	15.0	0.3	1	23	315	337	315	337	0.99
6	15	0.00027	0.013	15.9	2.4	1	23	356	378	356	378	0.97
7	15	0.091	4.4	7.9	1.6	1	23	409	430	409	430	0.92
8	15	0.00027	0.013	15.9	0.7	3	23	438	458	437	458	0.95
9	15	8.1e-05	0.0039	17.5	0.3	1	20	464	483	464	485	0.93
10	15	0.011	0.51	10.8	3.6	1	23	492	514	492	514	0.98
11	15	2.2e-06	0.00011	22.4	2.4	1	23	520	542	520	542	0.97
12	15	9.5e-05	0.0046	17.3	2.8	1	23	548	570	548	570	0.98
13	15	1.7e-05	0.00084	19.6	0.6	1	23	576	598	576	598	0.98
14	15	0.00075	0.036	14.5	1.7	1	23	602	624	602	624	0.97
15	15	0.00023	0.011	16.1	0.1	1	23	632	655	632	655	0.95

Sequence Information

Coding Sequence: ATGGCCCCACTATCTTTAAATTGTCCTATGTGTTGCAATGAGACATTTGATTCGCATAGTTCATTGAAATATCATCTACTTAGTATTATAGAAAATCTACTTTGTCCGTCTTGTAATGAACGATTTGATGATTTAATGGATTTGGCTGATCATTTAACCAATGAATGCAAAAATTTCCATCAAGAATCTGACCAAGCTTACTTAAATTCAATGGCGGTtgatatacaaaaattatccGATCAGAATCATACCATTCTTGATCcattacaaatcaaaaaagaaCGAGAAGATGTTGGTGACGGTGAAGAACAACAAATACTTTATTATGATGCACAAGGGCAACAAGTATTTAAAGtagaaaatgaacaaaatgaAATGATGATTTACACATGTCAAGTGTGTAACGTTCAGTTTACATCCCTTCAAGAACATTTATCACAATATCATGAAGGAGAAGAAATCGTACTAGAAAGTGATGATAATATGGAAACTACAGTGGAAGGAGaggatgaagaagaagaactaTTTGTTCTTCAAGAAGACGAAGATTCTATATTAGGTATTGATAACGATGAAAATACTATTGATACATATCACAGTGAATTAGATGAAGGCCttgtagaagaagaagaaccaGATAAAAATGATCCAGATTATGAAGTGGGTACGAGTAGACGTCGTAAACTTGAATCACAAAATGACGTTCTAATGGAACCAGAAGTTGCGAAGTATATTGTTgaaaatgGTGAAGTAAGAAAAATTAACGAACAAGAAGCAGGCGAAGTAACGGATCCTAAATCGGTTATTGAGATTTATAGTTGTAAAAATTGTAGGTTGCAATTCCCACAGattaatcattataataaacataagTGCAGTAATGCTAAAAAACTTGGTagaagaaaagataaaaaacgAATAAAGaataaCGAAGAGTTAAGGTATCAATGCACTTTTTGTCAAGCAATATATTCAAGTTTAATAGCTTTAAATGACCATATGAAATCGCATTTGGTTGAAGATGATTCTGGAATGGTCCAGAAGAAACGCATTACCATGTCATTGCATGTATGTGAAATTTGCAATACGAAATTTCCATCGTATAAACAATTGAGATTGCATAGTCGTATGCACGATCCAGTAAAAGACAAAAAAATTGAGCCTCCAGTTTCCTATAATATTCTCGGTCAACCAAAAACGACTAATAAATCGGAACAAGGAGTGTTTGAATGTGAAATATGTCATAAAACTTATGATTTAGAGTATAAAGATGCTCATTTGAAATCACATGATGACCAAGATGAAAATTATTGTCTGATTTGTAATAAGAAATTTGATACaagagaaaatttaatattgcaTAAGAATGCTCACACCAGTAccaaaaaatttatttgttcatATTGCAAAAAACCATTTAAAAATTACGAGGCCTTGGAAAAACATGTAGATACTCAATGTAGAAGTAGAAAATATGAATGTCAACATTGCGGGCGAAGATTTTTGAGACCGCAtgaaaaaGTGAAACATGAAAGAATTCATACAGGTGAAAAACCACATATATGCCCTATTTGTAATAAAGCATTTCGAGTGGCTTATTGTCTAACATTACATATGCGTACGCATACTGGTGTAAGACCTTATTCGTGTCAGCAGTGTGGAAAACGATTCAAGTCATTGAGCGTATACAATCATCATTTGTTAATACATTCCGATGAACGAAAATATAAATgtgaatattgctcaaaagcATTTAAAACTGCTGTCCAATTAGCTGGACATAAGAACAGCCATACGAAGCCGTTTTGTTGCAGTGAATGTAATCGACCATTTTCCTCATTATTTGCCGTTAGAGCTCATCGTGAAACtcataataaagaaaatggaCTTAGATTTGAGTGTTACGTATGTGGAGCGAGTTATGCAAGATCATTTGCACTTAAAGATCATATGGAGGAAGCTCATAAAGGCGTTAAAGTGGTCAGTACTGAAAATAATCAAGGACTTGACGAACGGCAAATTTTCGGAGATGATGACGAGCCAGATTACGCTATTGTTGAAGGGACATCTGGTAGTGTAATCGCTATTGAAGGTGTTCAGCAAGATGGAGAAAATGAGAAATATCTAGAAGACAATTCAATGGAAGTTGCTTCTGGTTAA
Protein Sequence: MAPLSLNCPMCCNETFDSHSSLKYHLLSIIENLLCPSCNERFDDLMDLADHLTNECKNFHQESDQAYLNSMAVDIQKLSDQNHTILDPLQIKKEREDVGDGEEQQILYYDAQGQQVFKVENEQNEMMIYTCQVCNVQFTSLQEHLSQYHEGEEIVLESDDNMETTVEGEDEEEELFVLQEDEDSILGIDNDENTIDTYHSELDEGLVEEEEPDKNDPDYEVGTSRRRKLESQNDVLMEPEVAKYIVENGEVRKINEQEAGEVTDPKSVIEIYSCKNCRLQFPQINHYNKHKCSNAKKLGRRKDKKRIKNNEELRYQCTFCQAIYSSLIALNDHMKSHLVEDDSGMVQKKRITMSLHVCEICNTKFPSYKQLRLHSRMHDPVKDKKIEPPVSYNILGQPKTTNKSEQGVFECEICHKTYDLEYKDAHLKSHDDQDENYCLICNKKFDTRENLILHKNAHTSTKKFICSYCKKPFKNYEALEKHVDTQCRSRKYECQHCGRRFLRPHEKVKHERIHTGEKPHICPICNKAFRVAYCLTLHMRTHTGVRPYSCQQCGKRFKSLSVYNHHLLIHSDERKYKCEYCSKAFKTAVQLAGHKNSHTKPFCCSECNRPFSSLFAVRAHRETHNKENGLRFECYVCGASYARSFALKDHMEEAHKGVKVVSTENNQGLDERQIFGDDDEPDYAIVEGTSGSVIAIEGVQQDGENEKYLEDNSMEVASG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -