Pcyl007764.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456489.1:12703056-12709644[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00066 0.032 14.6 3.8 2 23 182 204 182 204 0.96 2 20 0.54 26 5.5 1.2 1 21 366 386 366 387 0.93 3 20 0.057 2.8 8.5 1.9 1 23 416 439 416 439 0.93 4 20 0.58 28 5.4 1.6 1 19 472 490 472 495 0.93 5 20 0.00064 0.031 14.7 5.0 3 23 578 598 577 598 0.97 6 20 0.063 3 8.4 0.3 1 23 619 641 619 641 0.91 7 20 0.00017 0.0084 16.5 2.9 2 23 645 666 644 666 0.97 8 20 0.0023 0.11 12.9 2.5 3 23 704 725 703 725 0.92 9 20 0.23 11 6.7 0.4 2 23 773 795 772 795 0.94 10 20 0.00082 0.04 14.3 1.6 2 23 806 827 805 827 0.97 11 20 9.5e-05 0.0046 17.3 3.9 1 23 860 882 860 882 0.98 12 20 0.062 3 8.4 0.3 3 23 897 918 896 918 0.92 13 20 0.00023 0.011 16.1 2.9 1 23 935 957 935 957 0.98 14 20 0.00014 0.0069 16.7 3.0 2 23 970 992 969 992 0.96 15 20 0.0031 0.15 12.5 0.5 1 20 1015 1034 1015 1037 0.90 16 20 0.01 0.49 10.9 0.1 1 23 1083 1106 1083 1106 0.96 17 20 0.0025 0.12 12.8 0.2 2 23 1117 1138 1117 1138 0.97 18 20 0.014 0.66 10.5 0.9 1 23 1162 1185 1162 1185 0.96 19 20 1.4e-05 0.0007 19.9 1.1 1 23 1187 1209 1187 1209 0.98 20 20 0.00022 0.011 16.1 0.2 1 23 1226 1249 1226 1249 0.96
Sequence Information
- Coding Sequence
- ATGGCTGAGATACGAGAAAGTTCTAACCAAGCTATTGCTTGTAGACTGTGTTTATCAGATAAATTTGATTCTCTAAAACCAATTTTCTCCAATGAACTTGGCCCTAACAGTATTCCCCAGAAAATACAACAATTACTTCTTATTCAGGTGCAAAAGGAAGATCAGCTTTCAACTCTTATCTGCAATGATTGTATTATTAGACTGGATACATGGCAGTCGTATAAAAAGCAATGTCGtcgaaatcaaataaaattaatggaaatcCTTAATAGGAAAAAGGAACATCGAACTGCTCCTGGATTGGAAGCGAATCTGTTCATCAAATCTGAACCAGACGATCTTGATTCTAATAATGCTGATGAAAATGTTGAAATCGTGAATGAAACTCCGTTGTTATCAATCAAAGTTGAAGTTGCTGAAAATACTACCCAAGATGAGGATCATGGTGATCTACCACCTTCTTTAACTCCACATGCATATGattcaaatgaaaataattttaatgagtCAACAGCGAATTTAAAGGAAACTATTGaaaGCAGAACATGTAAGGAATGTGACAGGACTTTTTGTTCAATCTACAGCATGAAACGTCACAGAAAAGTCGTACATAAAAAGTCACGATCGAACAgtagcaaaaaaagaaaagctgCTTCAATTAATAAAGCGAATATTGAACAATATTTTTCAAGTAAATCTAAAATTACTCTACATTCTGGTAACGAAGGCAGTAAGTCTCAAGGAAGTTCTGCTATTACGGAATATAATAATGATTCAAAAGCTTCGCAAAGTTCCGTCGATAAAAATGCACCTGACAATAGTTTAAGCTCTGAAATTATTCATGATGCAGAGAATGAATCAATGGTAAACTTGACTCCTCTTCaagaaaaaattcaattcgCGGCTGGTTTAAAACTTGTGCAAAAGTCATCCTTAGGAACCATCCTTTCTAAAGTTGAATTGAGTTATATGAACAAATGTCGAGCTATGGTTTCCATGTTCAACACCCATAAATGCGCATGTCACAACGTCCAATATAATTCATTACGGAACCTTTTATCCCATTTAAAAGAAGTGAAATCATGGTTCCCTCTATTTACTTGTTATAGTTGCATGATCTCTTTCACTGATAGATCATCATTTAGTGTTCACTATAGCAAGTGTTCACGAGGTTCTTTAGAAACTCTAAGAAAGTTATCAAGCTTAAAAAGTCGAAGCGAAAATAAAATCAGACTTTATCAGAATTACAAATGTAATTTgtgtaaatttatatatagttTTTATGATGATTTTCGTACACATGTGACTGAAGAACATGTCACCGGAGAAGCTCCTTTTACCTGTTCCTGTCAGCTACAATTTAATACCGCAGAAGGTTATAAAACGCATTGTCTTAATTCGTGCTTTTTATCGTATTATTGTGATATTTGCTATGCTACATCATCTACCGCTGATGATTTTTTAAAGCATTGCTTAGAAAATCATGATAGCTCTGACGGTTTTGCATTACTACAGAAGTCTAATAACATAGCTAGAAAATCTTCTCAAAGTAGGGAAACAGTTGATATAGCAAATTTAGTTCATGGTAAACGGGATCGTCAAAAGTCTGTTAAAATTTCAACGGAGAGCGAAGTTTtggaaaaatcaaaatatatcTCATCTACTTATGtacgtaaaattttaaatatcgaCAATCCAAGAACCACTTTAGATTGGAAGAAGCCAGCTTGTTGTCCTTATTGTCGCAAATCGTATTCAAGCGCTCATAATATGGCAAGACATTATAAATCTCATTTGGAGAAAAATGAAGTTCCGATGAAGTCCGTGGAATCCACAGATCACCCGGAAAGTTTCCATTCTTGCCCAGATTGCCCGGGCATATTTACATCTTCCGATTGGAAAACCCACCTCGAACAATCTCATCCTTTGAAGTCTTGCACAGATtgtacaaaaacattcaaattcCAAAGTGAATTAGATGAACATAAAAAGACACATTTGAGTGTTACACTTTATCGGAATTCTAAGACCAATTCATATACAGTAACACCTACAAGTTCTACAGAAGcaatgcaaaataaaaaattaataggaGAAGTAATGGTTTTATGTGAAACATGTGATATTATGTTTACAAATAAAGAGGAtctaaataaacataaaacatTATGCCACGAAACCCCTAATCTGTGCAGTTCCGTGGATACGTTGGAAACATCTCTAGAAGATATAGATTTACCTATTTTAGAACCAGAGATTGAAACGGatacaattaaagaaaagCCCAAGAAGGTGTTTTCCAATAGTCAATCAACGGTATGCGAAATCTGTAACCGATATTATTTATCAATGAAAAGCTTAAGAGCTCATATTAAAGCTAAGCATGGACCTGGTAATAAGAATGCATATCCGAAAAAGTGTGACTATTGTGACAAAATATTCACTACAGGAGCGTCATTCTATAATCATACACAGAAACATGAACGACTAGCTGATTTTAAGCGGTCCAATGTTGAGCTGGCTAATATAGAAGAATCGGACCATGATGAAATAGACGTAGAACAAGATGAATCTTATCATACTTGCGACTGGTGCTTTAAAGTGTTTGATTCAAAGTTTAAACTAAAGGAACACATGAGATCTCATGGAGGAACAAAATCACCATCAAAAAGAGCTAGAAAAGTGCTTTGCGATCTTTGCCATATTTCTGTTAACGATCAAGATGCTTTACGACAACATAAAATTGAGGAACACAGGCTTGATAGTCGTACTGTTCCAATGCCAGTGAACAATTCCGATGTGTATAGTTGCGATATTTGtgacaaaaaatataattcaaGAAGGGGATATAACCGTCACAAAAAGAGTCATATATCAACCAAGAGTAAAAGTACTTCAGTGTActgtaaatgtaaatattgtaaagtCGTTTATAATTCAGTTGATAACTTAACAAAGCATATGAATAGAGAACACAGTGAAATTATGAAATCTGTGAGCAATAAGAATATAAACATCAAAAAGAAAGGCCCAGAAAGATTATACAAATGTCCTTTATgttcaaaaatgtttaaaactCTAACAGCAATGTCATCCCATAGTGGATGGCACAAACGGAGTGGATTTACTCAACTGGCACCTACAGCCAACACTCCACAAGCAACTGCAACAGctaaattaattaagcatACAAGAATACTTAGCAAAGGTGCAAGTACCGCTGAAAATAAAACTGAGctaaaagattaccaatgcaAAATCTGCTCAATGCAATTATCGAACGGTACAGCATTACAAATTCATATGCTCCAAGTACATCAAAATGTCGATGCTAAAATGTTAGTACCTCGGTGCAGTATCTGCAATGAAGATTTTGAAACCCAAGCTGCTTATGAGATACATAAACGATATCATTATTTATTGGAAAGACGAAAAGAATACCCAGTAATACAAAACATACAAAGTTTGGGGCAAGATAAACAACATTCTTGCGGTTTTTGTAATGCAACATTTGATCGATCTGAAATACTAAAGGCCCATATCCGATTGTATCAtgattttaaatgtaaattttgcCCAAGAGTATTTGCGAAACAAAAATCTTTGAGTGCACATCTTAAAGTACATGAGAAACAGAACACGTCTGACAAGATTGAAttgaataatataaaaagttATGCCTGTTCTATTTGCAAAGCATCTTTTAATTATGCAAGTGATTTACGTGAGCATACTATTAAAGAACATCCTTTCTGA
- Protein Sequence
- MAEIRESSNQAIACRLCLSDKFDSLKPIFSNELGPNSIPQKIQQLLLIQVQKEDQLSTLICNDCIIRLDTWQSYKKQCRRNQIKLMEILNRKKEHRTAPGLEANLFIKSEPDDLDSNNADENVEIVNETPLLSIKVEVAENTTQDEDHGDLPPSLTPHAYDSNENNFNESTANLKETIESRTCKECDRTFCSIYSMKRHRKVVHKKSRSNSSKKRKAASINKANIEQYFSSKSKITLHSGNEGSKSQGSSAITEYNNDSKASQSSVDKNAPDNSLSSEIIHDAENESMVNLTPLQEKIQFAAGLKLVQKSSLGTILSKVELSYMNKCRAMVSMFNTHKCACHNVQYNSLRNLLSHLKEVKSWFPLFTCYSCMISFTDRSSFSVHYSKCSRGSLETLRKLSSLKSRSENKIRLYQNYKCNLCKFIYSFYDDFRTHVTEEHVTGEAPFTCSCQLQFNTAEGYKTHCLNSCFLSYYCDICYATSSTADDFLKHCLENHDSSDGFALLQKSNNIARKSSQSRETVDIANLVHGKRDRQKSVKISTESEVLEKSKYISSTYVRKILNIDNPRTTLDWKKPACCPYCRKSYSSAHNMARHYKSHLEKNEVPMKSVESTDHPESFHSCPDCPGIFTSSDWKTHLEQSHPLKSCTDCTKTFKFQSELDEHKKTHLSVTLYRNSKTNSYTVTPTSSTEAMQNKKLIGEVMVLCETCDIMFTNKEDLNKHKTLCHETPNLCSSVDTLETSLEDIDLPILEPEIETDTIKEKPKKVFSNSQSTVCEICNRYYLSMKSLRAHIKAKHGPGNKNAYPKKCDYCDKIFTTGASFYNHTQKHERLADFKRSNVELANIEESDHDEIDVEQDESYHTCDWCFKVFDSKFKLKEHMRSHGGTKSPSKRARKVLCDLCHISVNDQDALRQHKIEEHRLDSRTVPMPVNNSDVYSCDICDKKYNSRRGYNRHKKSHISTKSKSTSVYCKCKYCKVVYNSVDNLTKHMNREHSEIMKSVSNKNINIKKKGPERLYKCPLCSKMFKTLTAMSSHSGWHKRSGFTQLAPTANTPQATATAKLIKHTRILSKGASTAENKTELKDYQCKICSMQLSNGTALQIHMLQVHQNVDAKMLVPRCSICNEDFETQAAYEIHKRYHYLLERRKEYPVIQNIQSLGQDKQHSCGFCNATFDRSEILKAHIRLYHDFKCKFCPRVFAKQKSLSAHLKVHEKQNTSDKIELNNIKSYACSICKASFNYASDLREHTIKEHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -