Pcyl001877.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456488.1:16290753-16292703[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.012 0.56 10.7 4.6 1 23 147 169 147 169 0.97 2 16 0.012 0.59 10.6 2.6 2 23 177 198 176 198 0.97 3 16 0.00046 0.022 15.1 1.1 1 19 208 226 208 230 0.90 4 16 0.00034 0.017 15.5 0.5 1 23 235 258 235 258 0.96 5 16 0.15 7.4 7.2 1.6 1 23 264 286 264 286 0.97 6 16 5.2e-05 0.0025 18.1 0.7 1 23 297 319 297 319 0.96 7 16 1.6e-07 7.7e-06 26.0 1.2 1 23 325 347 325 347 0.98 8 16 0.15 7.3 7.2 5.8 2 23 371 392 370 392 0.96 9 16 3.4e-05 0.0017 18.7 1.1 2 23 403 424 402 424 0.95 10 16 0.00033 0.016 15.6 0.5 1 23 429 452 429 452 0.96 11 16 0.23 11 6.7 2.2 1 23 458 480 458 480 0.97 12 16 6.3e-05 0.003 17.9 0.6 1 23 491 513 491 513 0.97 13 16 4e-05 0.0019 18.5 2.4 1 23 519 541 519 541 0.98 14 16 0.0018 0.087 13.3 4.7 1 23 547 569 547 569 0.97 15 16 8.9e-05 0.0043 17.4 1.1 1 23 575 598 575 598 0.96 16 16 2.5e-06 0.00012 22.3 1.4 1 23 604 626 604 626 0.97
Sequence Information
- Coding Sequence
- ATGGAAGATAATTtgtcaataaaaaattgtacaGTAGGTGAAGTATGCCGTGCATGCCTGACTTTTACTACATCATATAGCGCcgtaaaaattaatgaaccaAATATATTAACGATATGTATTCCACAAATTAACATAGAACTCACTCAAAATCCAGTAGTTTGTCAAAATTGTATGGATCAATTGCTCAATTATCATAGGTTCCTAACTTCCTGTTTAGAATCTGAGAAACAACTAATCAATTAttgtgaaaataataatattgttccACCAATAAGTTCAGACGACTTGTTAAAAATGCAGATAAATCCAACatttaatatcaaaattgAAGACTGCACATTGGATTTAGCTGAAGATATAAAGAAAGAAATTGAGCAATCAATAATTCTACAAGATAATATCAATGAGAATTCTACTGACAAAATAACACAATCTTTTCATTGCCAGAATTGTAATAAGATTTTTAATTCGGAACGTACATTCGATAGGCACAAGCAAATACATAATCTAAATCAGACGCTAATTACCTGTGAAAAATGTCATTTGACATTTGATAGCCAAGACATTTATAAGAAGCATTTAACCACGCATGTAACTAAAGCAAAGAATTTAAAAGTATTTAGTTGCAcgatttgtaataaaattttcaatcgGAAAGCTAGATTACTGAAACATGATGAAACGCATAAAGCGAAACCATTTCGGTGCAAAAATTGTGGGAGGCAATTTATTGAGGAACAATTATTAAAAGCTCATACGGAGAAAGTACATCTTAACGACAAATTGTTTGAATGCACAATATGTGCAAATAAATATAGTACTCAAAAGACATtagattttcatttaaaaactCATGAAGAAGATAAATCTGAGAAAAGTTATAAATTTATGTGTGACTTTTGCggaaaattgttttatagGAAAAGCGATCTAGAGCTTCACGCAATGAATCATACAGGTGGGAGACCATTTAGTTGTACAATATGTAATAAAAGtttcaaacaaaattatgtttTAGAAGCACATATGCGAAGCCATACTGACAAAAAGCTTTCTTGTTGTAGTCTTTGTGATTGTAAATCTTCACATCAagacataaaattaattacgtGTAAAAAGTGCAATAATACTTTTGACtgcaaatataattataagaaACATTTAACAATGCATGTAAATGAAGCTAGAAAATCAAAAGTCCTTAGCTGCAAAGTTTGTAATAAAGTATTCAATCGGAAAGCTAGATTACAAAAACATGAAGAATCACATAAAACGAAACCATTTCGATGCAAACAATGTGGAAGGCAATTTATTGAAGAACAATTATTAAAAGCTCATACGGAGAAAGTACATCTTAACGAAAAATTGTTTGAATGCACAACATGCGCAAATAAGTATAGTACTCAAAAGACGTTAGAATTTCATCTAAAATCTCATGAAGAAGATAAATCAGAAAAATCACATAAATTTATGTGCAATTTTTGTGGAAAACTATTTTATCGAAAAGGTGATCTAGAACTGCATGTAATGAATCATACCGGCGAGCGACCTTTTAGCTGTACAAAATGCAAtaagaaatttaaacaaaattatattttggaAGCACATCTGAGAAGCCATGCTGGAGAAAAACCTTTTTGCTGTAGTCTTTGTGATTATAAATCTTCACTTAAAGGTCATTTGCAAGCCCATATGAAAAGTCACTCAGGCGAACGACCATTTCCATGCCCATATTGCGAAAAGAGATTTGCTAGAAAGAGTCATTCAATTCTTCATGTTAGATCTGCTCATACTGGAGAACGACCATTCGCATGCAATATTTGTGAGAGAACATTTACGAGACGTGATTATTTAATGAAACATAAAAATgtgcatataaaaaaataa
- Protein Sequence
- MEDNLSIKNCTVGEVCRACLTFTTSYSAVKINEPNILTICIPQINIELTQNPVVCQNCMDQLLNYHRFLTSCLESEKQLINYCENNNIVPPISSDDLLKMQINPTFNIKIEDCTLDLAEDIKKEIEQSIILQDNINENSTDKITQSFHCQNCNKIFNSERTFDRHKQIHNLNQTLITCEKCHLTFDSQDIYKKHLTTHVTKAKNLKVFSCTICNKIFNRKARLLKHDETHKAKPFRCKNCGRQFIEEQLLKAHTEKVHLNDKLFECTICANKYSTQKTLDFHLKTHEEDKSEKSYKFMCDFCGKLFYRKSDLELHAMNHTGGRPFSCTICNKSFKQNYVLEAHMRSHTDKKLSCCSLCDCKSSHQDIKLITCKKCNNTFDCKYNYKKHLTMHVNEARKSKVLSCKVCNKVFNRKARLQKHEESHKTKPFRCKQCGRQFIEEQLLKAHTEKVHLNEKLFECTTCANKYSTQKTLEFHLKSHEEDKSEKSHKFMCNFCGKLFYRKGDLELHVMNHTGERPFSCTKCNKKFKQNYILEAHLRSHAGEKPFCCSLCDYKSSLKGHLQAHMKSHSGERPFPCPYCEKRFARKSHSILHVRSAHTGERPFACNICERTFTRRDYLMKHKNVHIKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -