Pcyl007779.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456489.1:12952016-12957091[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.3e-05 0.0011 19.2 1.6 1 23 167 189 167 189 0.96 2 15 0.00062 0.03 14.7 1.7 1 23 195 217 195 217 0.96 3 15 0.00015 0.0071 16.7 0.1 1 23 303 325 303 325 0.98 4 15 0.15 7.4 7.2 0.1 1 23 331 354 331 354 0.90 5 15 3.7e-06 0.00018 21.7 3.8 1 23 380 402 380 402 0.98 6 15 0.0032 0.16 12.5 0.2 1 23 415 437 415 437 0.95 7 15 0.019 0.9 10.1 1.3 1 23 443 466 443 466 0.96 8 15 0.011 0.52 10.8 3.2 1 19 472 490 472 491 0.97 9 15 9.5e-05 0.0046 17.3 4.7 1 23 500 522 500 522 0.97 10 15 0.0045 0.22 12.0 0.3 2 23 528 549 527 549 0.97 11 15 1.2e-05 0.00059 20.1 0.4 1 23 557 579 557 579 0.98 12 15 0.0053 0.26 11.8 0.2 3 23 587 607 585 607 0.97 13 15 0.00017 0.0082 16.5 0.3 1 23 613 635 613 636 0.95 14 15 0.41 20 5.8 0.4 1 23 650 672 650 672 0.96 15 15 0.00013 0.0063 16.9 0.0 1 20 1057 1076 1057 1079 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAGTCATATACATTGACTTGGGAGGATGAAGGTAATGTGGTACAAACCGAAGAGGTAATCACaatggaaaatgaaataatagctaccgaagaagaagaatacgTAACAGGAGAACAGTATGAACCGGAATTTGAAACTGAAGAAATAATTGACGATGTGGGCATTATTGAGGAGGAGattataGAAGATGATAACATTCAGACTGAACAAGAAATTACACTGGAAACGGAGCAACCTGGTGAAGAagaatttatgtatttatcaGatgaaaatatattgataatgAATGATGCAAATGACACTGAAGCTTATACGCAAGATGATTTAATGCAAGTTACCGAAGAAGTTATCACCGAACAATGGGatgAAGCTTGCCCTGAAGAAATTATCATCGGTTCAGAAGAAGCTGTTGGTTCAGTTGATGGTCAATTAATGCAGGACGAAGATATTCCTTTACCAACGGATCAAGATTCTTATACTGCTGCAAGGCCATACCCATGTGATTTTTGTAGCAAGAGgTTCAGAAAGAAAGCGAATTTAATGAATCATATGTTCGCTCATCAAACTGATCGACCTCACGATTGTAATTTATGTGGTGTACGATATATGCGAAAATCTGATTTATTAAATCATCTAAAGAACCATGCAGTTGCTCCGGATTCCGCACCATTAGAAGATGatgaaatatttgatgaaCAAAATTTTGATGCAGAAAGGCGATCAGGAAATTATACTAGAAGAAAACGTAAACGAGTTGCACGTGATGActatttcaatgaaatgttttCAGCTGAACCTGAAACATCGGAGGATCGATTAAATGATAGCAGTTCAAACATTGAATACTATACATCGGGCGACACGGAAATAAGATATCCTGTAACTGATCCAAGAAAACCATTTGTTTGCCAGCACTGCGGTGTAGGATTTGCTAGAGAGAAAGCTTTGGCGTCGCATGCCCGAATTCACGGGGGTGACAGTCCTTTCGAATGCCAAAAATGTGGAGAAATGTTTTGGGACATGGGGTTGATGCAGGAGcatgcaaaaattaaacatggagaaatagaagattttgATTATGACGATGATGAAGACTATTCCGATTCAGAACAAGGAACGAGATATGGCACATTTTATTGTTCTAGTTGTGGCTTATCTTTTCATAGACAAGACAATTTAAAGCGACATCAGCGAATTCATATCAAAGAGGAATATGTTAATGAACAAGAATTTGGCCATATGTGCAATGTTTGTGGCGAATGTTTTAACGAAGCTTTGGATCTCTTGGCCCATGCGGAAGTTCATGCAAGAGGCTCGGAACATCGCTGTATGATGTGTGGTGAAATTTGTATGGATGAATCATCTTTAGCCAATCACGTTCAATcgtatcataaaaatttaccgCCTCACACTTGCTCCCTTTGCGGGAGAACATGTCGAGATAGTCGAGCTTTATTCAAACATTCTTGGGAACATTCAAAGgaAAAATCTTTTGCTTGCAATCAGTGCACTAAAACGTTTCACAACAAAGCGCGTCTCAAACGTCATATGCAATCTCATAGaaataaagtCGTGACATGCGATATTTGTGGTGAAGATTTTCCTGATGGAAGAACATTAATGAACCATAGGCATAGTCACACTAATATTTCTGGCAGACAGTTTCCATGTCGTGAATGTGGGAAAACTTTCGGGTCTAGAAGTTCTCAGCAGATTCATATTCGAATACATACAGGTGAAAGACCATATGGTTGTCGATTCTGTTGGAAGGCGTTTGCCGATGGTGGTACTTTAAGAAAACATGAACGAATTCATACTGGCGAAAAACCATACGCATGCGCCGTTTGCCCTAGAGCTTTTAATCAACGAGTAGTGCTTAGGGAGCACATAAGGTCACATCATTCAGGCCCAGATCCAAAATTTTCTCAAAGCACTACACCATATTGCTGTTCTGTTTGCTCAGACAGATTTGTGGCTTCACAAGATTTAATTGTGCATTTAATACAGCATTGTGACATGAACACCGCATTAAAACGACAACCACAAGTGGGTCCCAGAAAATATAAACGAAGGAGGAAGTTAAAACCTCATGAGTTAGAATTAATGTCTGCGGGATCTATGACGTCGTTTAATATAACTGGAGAAACAATTAATCCTAGTGATGTAGATGAAGATGgtgaaagaagaagaaaatctaGAAGAGGAATAAGAAAAACTTCTGTGGTTAACACTTCTCCAAAGCTATCtGCCAACGAATCAGTGGAAGAAATATATGAGGCCATAAATGTAATTGAAAATTCTGAGACTATTGCTGCGGCTTCGAAATCACCTACATCAAAAAATAAGTTAAAGAAAACGAAAACTGATTCTGTATCAGTTCCATCCAGGCCTAAAATGATCCATACACAAAAAACCCGGGTTGCTGTTGAGACAGGGGAAGATGGTAGAATTCGTCATAAGACTAAAACATTAGTGACAAGAACTCAACCAGCTGAAATTAAATCGGCTATAGGTGAAAGAATCCGACCAAGAACGAAAAACGTTAGTTATCATGTACTTGCTCCAGATAAATATACATTGGCAACATTTCCAACAAATGAAACTGAAGAAGCTGTGCAAAGTGTGTTGAAAGAAACTATTACTGAATATCCAGGCAATGGAGAATTTTTGACAGAAGAGatTATTGAAGAAACACCTGATGTTGCTGCTGAGCAAATAGttgaaacagaaaatccaGTACCTGTGAGTATAGTGGAAGTTCGAACTAGACGTAATAGTTCCAGAAGTTCAAAGAATGTAATTGGTCCAGGAAGCAAAGTTAGACTTGTAAAAGAAGGCATGATTATATCAAAAATGAAACGAAATAGTGAAAGCCATGTTGAACCGGAAACTATTTTGCCTGATATTCAATCGAcagaaattaatataaaacaaGAACATTATAGTCACTTTACAAGATCTATTAAAAGTGAACAACGCAGCAGAGACTCAGAAGAATCTTATAATGAATATCAAAATATCGAAGATAACGTGAATGAACCTATTGACAACCCCAGTGCACAATATAATAACACCCATATTAAGCATGAGATCTTAGATCCAAGTGCATTACATGAATTAGCTGAAGTATCACTTCAACATGCTCAGAATTCCGCTAATTATTATAAGTGTGAAATGTGCGATGAAGTATTTTCAGATCGTGCACAACTTTTAATCCACGTTCCAGTACACATTtga
- Protein Sequence
- MEESYTLTWEDEGNVVQTEEVITMENEIIATEEEEYVTGEQYEPEFETEEIIDDVGIIEEEIIEDDNIQTEQEITLETEQPGEEEFMYLSDENILIMNDANDTEAYTQDDLMQVTEEVITEQWDEACPEEIIIGSEEAVGSVDGQLMQDEDIPLPTDQDSYTAARPYPCDFCSKRFRKKANLMNHMFAHQTDRPHDCNLCGVRYMRKSDLLNHLKNHAVAPDSAPLEDDEIFDEQNFDAERRSGNYTRRKRKRVARDDYFNEMFSAEPETSEDRLNDSSSNIEYYTSGDTEIRYPVTDPRKPFVCQHCGVGFAREKALASHARIHGGDSPFECQKCGEMFWDMGLMQEHAKIKHGEIEDFDYDDDEDYSDSEQGTRYGTFYCSSCGLSFHRQDNLKRHQRIHIKEEYVNEQEFGHMCNVCGECFNEALDLLAHAEVHARGSEHRCMMCGEICMDESSLANHVQSYHKNLPPHTCSLCGRTCRDSRALFKHSWEHSKEKSFACNQCTKTFHNKARLKRHMQSHRNKVVTCDICGEDFPDGRTLMNHRHSHTNISGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKFSQSTTPYCCSVCSDRFVASQDLIVHLIQHCDMNTALKRQPQVGPRKYKRRRKLKPHELELMSAGSMTSFNITGETINPSDVDEDGERRRKSRRGIRKTSVVNTSPKLSANESVEEIYEAINVIENSETIAAASKSPTSKNKLKKTKTDSVSVPSRPKMIHTQKTRVAVETGEDGRIRHKTKTLVTRTQPAEIKSAIGERIRPRTKNVSYHVLAPDKYTLATFPTNETEEAVQSVLKETITEYPGNGEFLTEEIIEETPDVAAEQIVETENPVPVSIVEVRTRRNSSRSSKNVIGPGSKVRLVKEGMIISKMKRNSESHVEPETILPDIQSTEINIKQEHYSHFTRSIKSEQRSRDSEESYNEYQNIEDNVNEPIDNPSAQYNNTHIKHEILDPSALHELAEVSLQHAQNSANYYKCEMCDEVFSDRAQLLIHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -