Pcyl014952.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456494.1:8984412-8987997[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.074 3.6 8.2 0.7 1 23 16 39 16 39 0.94 2 21 0.0034 0.17 12.4 0.2 2 21 51 70 51 71 0.93 3 21 8.6e-05 0.0041 17.4 1.8 1 23 86 108 86 108 0.98 4 21 0.0035 0.17 12.4 0.5 1 23 114 136 114 136 0.90 5 21 1.4e-05 0.00066 19.9 2.1 1 23 142 164 142 164 0.96 6 21 0.028 1.3 9.5 2.6 1 14 171 184 171 185 0.92 7 21 0.28 13 6.4 2.7 3 23 213 233 212 233 0.94 8 21 0.39 19 5.9 4.8 1 23 249 271 249 271 0.97 9 21 0.013 0.63 10.6 0.6 2 23 274 295 274 295 0.96 10 21 0.013 0.61 10.6 6.1 1 23 330 352 330 353 0.96 11 21 0.0023 0.11 13.0 0.5 1 23 401 423 401 423 0.97 12 21 9.5e-05 0.0046 17.3 1.0 1 23 429 451 429 451 0.98 13 21 1.5e-06 7.2e-05 23.0 1.5 1 23 457 479 457 479 0.97 14 21 0.023 1.1 9.8 1.6 2 23 493 515 492 515 0.96 15 21 0.0008 0.039 14.4 0.7 1 23 524 546 524 546 0.98 16 21 4.9e-05 0.0024 18.2 0.4 2 23 553 575 552 575 0.96 17 21 0.00067 0.032 14.6 3.7 1 23 581 603 581 603 0.97 18 21 3.6e-05 0.0017 18.6 0.3 1 23 642 664 642 664 0.98 19 21 6.3e-06 0.00031 21.0 0.4 1 23 670 692 670 692 0.98 20 21 5.3e-06 0.00026 21.2 2.6 1 23 698 721 698 721 0.96 21 21 5.1e-06 0.00025 21.3 0.8 1 23 730 753 730 753 0.97
Sequence Information
- Coding Sequence
- ATGCTAGAAGATCACATTAAAGTGGTCCATTTACAAAAAGAGCCATACAAATGTATCGTGTGCAATAATGCATTTACATTGAAATCAAGTATGCGAATACATCAGATTAATAAACATCGTGTAGTCGATGAAAGTGAACTGCCTAACAACTACTGTACATTGTGCAAAATGGCATTTAAAAAATCCGAATCGCTTGCAAAACATTTAGAAATGAAACGTTGCATTCCAACGCCGCGTGTAGAACGACAAGGGCATTACGTTTGTGATTTATGTGGCAAAGAGTTTCGTTTctataaaacatttaatttacatCAGCGCGAGCATGCGGGTGATAAACCGTATCAATGCAGCTATTGTCCGAAAACGTTTGTCATTAATTCGAAACGGCTCGCGCATGAAGTTTCTCATAGCGATTCGCGACCATTTTCATGTGAAACATGCGGACAAAATTACAAGACTTGGAAACATCTGAGGCGACATCTAGTAATACATGGCCCAAATGTTCTTACGTTTACATGCCACTTTTGTGGAAAGGAATTTTCTTCGAAAGATACATGCATCATAGTGGAAGTCGAATCTCAATCAAGTAAACTGATGCATGGAACAGATTCAATTGATCAAGTCGCCTCTGCCTGCTGCACTCAATGTTCGAAAACTTATGCCTCATCAACACTATTCGATATTCACAAATATATTCATGCAATCGAAGATAAAAAGTCGTATCAGACAACACGAACGAAACAATTTATATGCAATTTTTGCAAATTGAAATGTTCGacattagaaaaaatacgGAATCATACGAAATCGCATCGAGAAACATGTAAAAAGTGTAACGAAACATTTGCTAATGGTTTTACATTAGGATTGCATATGAGCGAACACAATCCAGAGAACCAGATGTGCTGTCCATACTGCAGTTACAAAACTGAGTTATTCCATTGTTTACGAACGCATTTATTCAATAAGCATTTGCAAACAAAAATCTATAGATGTGAAACTTGCGGAATGACATATTGCATGAAGCTGCATTTAGAAGAGCATATCCAGTTTCATCATAAGAAAATGGATCCACATCAATGGCGATGTTCCATCGAACTATTGCATTTTATGCAAGAGAACATTTGTACCGTTCAAGCACTGCAAATGCATATAAATGAAAGGCAtgcaaataaaatgaaacCGAAATCTGCGGAACGGTTCATTTGTGAAATTTGTGGCAATGACTTTTCACATAGACAATCATGGCTGCTACATATTAAAGGGCACAGTGGACTGAAACCATATAAATGCAAAGTATGTTCGAAAGCATTTAAAGTACAAGCATTTCTAACTGTACATGAAAAGAATCATTCCGATGAGAAGCCATTTGCATGTGAAAATTGTGGAGTTTGCTTTAAACGGAAATCTGGCTTGAGAAGGCATCTATTGATTCATACTAATATTAAGCCtacTATACAAATACCAAACAGTCTAACATGTGACTACTGTGCAAAAGTGTGCCTAAGAAGAAACAGTTTGACAGCGCATCTAAAAAGAATTCACAAAATCGaagtagaaaagaaaatttacagTTGTGATATTTGCTCAAGAGTACTGAGATCGAGACAGGGTCTGCTTAACCATCGAAATCGACATTTGAAACAATATAGTATTTACTGTAAAGTTTGCGGCAAAGGGTTTTTCCAACCGGCTAATTACAAATTGCATTTGAATTCGAAACACGAAGGAAAAACCGAGTTTATATGCAATGTGTGCAATCGACGTTGTTATGATAAAACATCGTTGAGGAATCATTTGGAAAAACATACGCCTGAATACAGGcgaaaatcgaaaataataTGCGATGAATGTGGCAGTGAGTTCCTCTGTGACCGTTACCTGAAAATCcataaaaataagaaacatACGGTAGATGATCGATTCGTTTGCGATATGTGCGGCAAACGACTGTACTCGAAAATTACACTACAGGATCATATGAATGTTCACATGGGACTGAAACCGCATAAATGTGAAATCTGTGGAACGGGTTTTGCCAATCCAGTGACGTTAAGATTGCATGTACGTCGTCATACCGGCGAAAAACCGTACAAGTGTTCGCAATGTGACAAGGCATTCACTCAAAGCCACACGCTGAAAATACACTATGCAAGAATCCACACGGGCTCAACCGTTGCTAAGCCGTTTATCTGTAATATTTGCAAAAGGGCATTTGGCAGTCGAAGCAGTTTAACTTCACATTTACGATCGAATCATCAAATAATCGAAATTACCTCGgatttttaa
- Protein Sequence
- MLEDHIKVVHLQKEPYKCIVCNNAFTLKSSMRIHQINKHRVVDESELPNNYCTLCKMAFKKSESLAKHLEMKRCIPTPRVERQGHYVCDLCGKEFRFYKTFNLHQREHAGDKPYQCSYCPKTFVINSKRLAHEVSHSDSRPFSCETCGQNYKTWKHLRRHLVIHGPNVLTFTCHFCGKEFSSKDTCIIVEVESQSSKLMHGTDSIDQVASACCTQCSKTYASSTLFDIHKYIHAIEDKKSYQTTRTKQFICNFCKLKCSTLEKIRNHTKSHRETCKKCNETFANGFTLGLHMSEHNPENQMCCPYCSYKTELFHCLRTHLFNKHLQTKIYRCETCGMTYCMKLHLEEHIQFHHKKMDPHQWRCSIELLHFMQENICTVQALQMHINERHANKMKPKSAERFICEICGNDFSHRQSWLLHIKGHSGLKPYKCKVCSKAFKVQAFLTVHEKNHSDEKPFACENCGVCFKRKSGLRRHLLIHTNIKPTIQIPNSLTCDYCAKVCLRRNSLTAHLKRIHKIEVEKKIYSCDICSRVLRSRQGLLNHRNRHLKQYSIYCKVCGKGFFQPANYKLHLNSKHEGKTEFICNVCNRRCYDKTSLRNHLEKHTPEYRRKSKIICDECGSEFLCDRYLKIHKNKKHTVDDRFVCDMCGKRLYSKITLQDHMNVHMGLKPHKCEICGTGFANPVTLRLHVRRHTGEKPYKCSQCDKAFTQSHTLKIHYARIHTGSTVAKPFICNICKRAFGSRSSLTSHLRSNHQIIEITSDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -