Pcyl008540.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- zfy1
- Assembly
- GCA_949748235.1
- Location
- OX456490.1:1501708-1505938[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.22 11 6.7 3.9 1 23 137 160 137 160 0.92 2 21 0.0089 0.43 11.1 0.1 2 23 165 185 164 185 0.96 3 21 1.3e-05 0.00062 20.0 1.2 2 23 190 211 189 211 0.97 4 21 0.00045 0.022 15.2 3.0 1 23 216 238 216 238 0.97 5 21 5.1 2.5e+02 2.4 2.1 3 23 252 269 251 269 0.82 6 21 0.00028 0.014 15.8 1.6 1 23 275 297 275 297 0.96 7 21 0.0003 0.015 15.7 1.4 1 23 303 326 303 326 0.97 8 21 0.00025 0.012 15.9 4.0 2 23 427 449 426 449 0.96 9 21 0.0011 0.052 14.0 0.2 3 23 455 474 453 474 0.96 10 21 0.00074 0.036 14.5 1.0 2 23 480 502 479 502 0.94 11 21 0.00014 0.0069 16.7 2.6 3 23 509 529 507 529 0.96 12 21 4 2e+02 2.7 1.6 2 23 538 556 537 556 0.84 13 21 4.3e-05 0.0021 18.4 1.5 1 23 562 584 562 584 0.97 14 21 0.00019 0.0092 16.3 3.2 2 23 591 613 590 613 0.95 15 21 0.00034 0.017 15.5 4.2 1 23 688 711 688 711 0.97 16 21 0.052 2.5 8.7 0.3 3 23 717 736 715 736 0.96 17 21 0.0018 0.085 13.3 0.6 3 23 743 763 742 763 0.97 18 21 2.2e-05 0.0011 19.3 2.5 1 23 768 790 768 790 0.97 19 21 0.19 9.2 6.9 0.5 2 23 799 817 798 817 0.94 20 21 2.2e-06 0.00011 22.4 1.4 1 23 823 845 823 845 0.98 21 21 7.2e-05 0.0035 17.7 3.6 2 23 852 874 851 874 0.96
Sequence Information
- Coding Sequence
- ATGTATTTAGAAAATGTGTGTAGAATTTGCTTGCGCATACCAAAGAATTCAACTGATTTGTTTGTAAATCATGAAAacctattaaataaaattaattctataTCATCAGTTAAGATTGAAATTAATCATGGCCTACCTAGAAAGATTTGTGACGAATGTCAACAAAACGTAAATTATATCCATAATTTTCAAAAGTTAATTAAACACACAGACTGTGATTTGAAATCCAGATTACAAACATTAACATGTACAAATAATCAAACAAAACCAAGACAAATCAGATCTATAAAACAAATTTCCACCACAACATGCAATGCAATTGAAATTTCTCACAGTCGAACAGATacagataaaaaagaaaaaaattcaatgGCTAAAATAAGGTTGACAACAAAACGGCAAAAAATTCATAATTGCAGTAGATGCACAGCTGAGTTTTCTTCAAAACATAAATTGGCCATGCATAGAATACAAAGTCATATGCCATTAATTGTTTGTACTATTTGTGGTGCCAAATTTCGAGAATACAATTATGGAAATCATATGGCAATACATTCACCACCGCAATCATGTAATATTTGTggtaaaatgttaaaaaatgcAAGTTCATTAAGATATCATCGAAAAACCCATGATCAACCgaaatatttttgtaaaatttgtggGAGAAGTTATGTATTGGCACACGATTATAAAAGGCATTATCTTAAGCATACAGATCCGGATCTAGCCTATCAACTGCGATCAAAACCTTGCTCGGTTTGCGGCAAAAATGTTCGAGGTATGAAGAAACATATGCTCACACATACCGGTGAAAAACCACATATCTGTTCCTATTGTAATAAAGGATTTCAAGCAAAATATGGATTAAAAGTTCATATTAGACAACATACGAATGAAAGACCGTATGTGTGTGAACATTGTGGTGATACATTCGCACAAACTGTGTCGTTAAGAACTCATTTGAAGAGTAAACATGGAATTATTGAATATCGAAATGAACTTTCAGAGAATATTTGTGAGGAATGTTTCgctaaaattaatcaattttataatttcaaaaaagtcATTGTAAATACCGATTACGATCTTTCAGCAAGATTGGAAACATTAAAACAAACGAATAATGTAGAAAAACGACGAACACAAAACGAATACGTGAAAACGGAATTAACAAACAACAATCGAATTCAAGTAGTTCAACATGAAAATCCGATTAGGAAAAAAACTTATACAACAAGAAGAATTCAAACATACCGAAACCAAAAAGGCATATCAAAATGCCCGTATTGTGGACGAATTTGCAATTCAAGTAGTCACTTATCTAGTCATAAAATTACGTATCACATACCTAAAAGTATTTGCGACATTTGCGGTTTAACAGTTCAATATAAGAATTTAAATAGGCATATGCAAATACATTTAGGGGAACCAATTCCGTGTAAGCAATGCGGCAAAGTATTGAAACATTCCGAATCAATGAAATCCCATATATTGCAACAGCATTTCGAACAGTCGTCTTGTTGTGAAATATGTGGACGAATATATAAGAACAGGTCGAAATATTGGCAACATATTAAAAGACATAAAGATCCAAATTATGGGAAAAAGAAATGTCCCGTTTGCCAGAAATTGGTGGATGGTTTAAAGAAACATATGCTTAGCCATACGGGAGCGAAACCATTTATTTGTAGTTATTGTAAAAAGGGATTCATTACCGCTTATAAACTAAAATTGCATACAAGATTACACACAAATGAACGACCATGTAAATGTGAACATTGTCCAAATGCGTTTACTTCGCCGTGGTTACTGAAAAGACATTTGAATAGTAAACATAGGATTTCAAATGATAATGTACAGTCTAATCACGATCTATTATCAAGACTGGAAACTTTAAAAGAAACAAATCACGTAGAAAAACCAAGAACTCGAAACGAGTACATaaaattggaattgaaaaatgaaaatagagaAGTAGTAACAGAAAATCGAAATCCTCGTAGAAAAGAGccgaataaaaacaaaaaaggagAAACGCATCGTAAAGAAAAAGACATTTACAAATGTCCGCACTGTGAACGGATTTGTAATACAAGCAGCCAGTTGGTCAGTCATAAAATCACATTTCACACACCGAAAAGTATCTGTGATATTTGCGGTTTGAAAATACGTTTCAAAAGCTTGAATCGACATATTCAGATACATTCGGAAAAACCGAGGGCATGTGAACAATGCGGCAAAGTATTGAAAAATTCCGAATCGATGAAATCCCATAAAATGTATCATTTTTCACAGACTTTTTGTTGTGAAATATGCGGAAGAGTATATAAATCGAGATCGGAATACGGAAGACATATAAAACGCCATAAAGATCCAAATTATGGTAAGAAACAATGCCCTGTTTGTCAGAAAATGGTGGAAAGCTTGACAAAGCATATGCTCAGCCATACTGGAGCGAAGCCATTTATTTGTACTTATTGTAAAAAGGGTTTTATTACCgcttataaattgaaattgcatATAAGAACACATACAAATGAACGACCGTGTAGATGTGAACATTGTCCCAATGCTTTCACTTCGCCATGGTTGTTGAAACGGCATATGAAAAGTAAACATGGAATTTGA
- Protein Sequence
- MYLENVCRICLRIPKNSTDLFVNHENLLNKINSISSVKIEINHGLPRKICDECQQNVNYIHNFQKLIKHTDCDLKSRLQTLTCTNNQTKPRQIRSIKQISTTTCNAIEISHSRTDTDKKEKNSMAKIRLTTKRQKIHNCSRCTAEFSSKHKLAMHRIQSHMPLIVCTICGAKFREYNYGNHMAIHSPPQSCNICGKMLKNASSLRYHRKTHDQPKYFCKICGRSYVLAHDYKRHYLKHTDPDLAYQLRSKPCSVCGKNVRGMKKHMLTHTGEKPHICSYCNKGFQAKYGLKVHIRQHTNERPYVCEHCGDTFAQTVSLRTHLKSKHGIIEYRNELSENICEECFAKINQFYNFKKVIVNTDYDLSARLETLKQTNNVEKRRTQNEYVKTELTNNNRIQVVQHENPIRKKTYTTRRIQTYRNQKGISKCPYCGRICNSSSHLSSHKITYHIPKSICDICGLTVQYKNLNRHMQIHLGEPIPCKQCGKVLKHSESMKSHILQQHFEQSSCCEICGRIYKNRSKYWQHIKRHKDPNYGKKKCPVCQKLVDGLKKHMLSHTGAKPFICSYCKKGFITAYKLKLHTRLHTNERPCKCEHCPNAFTSPWLLKRHLNSKHRISNDNVQSNHDLLSRLETLKETNHVEKPRTRNEYIKLELKNENREVVTENRNPRRKEPNKNKKGETHRKEKDIYKCPHCERICNTSSQLVSHKITFHTPKSICDICGLKIRFKSLNRHIQIHSEKPRACEQCGKVLKNSESMKSHKMYHFSQTFCCEICGRVYKSRSEYGRHIKRHKDPNYGKKQCPVCQKMVESLTKHMLSHTGAKPFICTYCKKGFITAYKLKLHIRTHTNERPCRCEHCPNAFTSPWLLKRHMKSKHGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -