Pcyl014969.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456494.1:9032206-9036464[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0034 0.17 12.4 2.7 1 23 19 42 19 42 0.95 2 27 0.0013 0.063 13.7 1.5 1 23 52 75 52 75 0.96 3 27 0.01 0.5 10.9 1.1 3 23 83 103 82 103 0.98 4 27 1.9e-06 9.3e-05 22.6 0.6 1 23 109 131 109 131 0.98 5 27 8.2e-05 0.004 17.5 2.4 1 23 137 159 137 159 0.98 6 27 1.5 75 4.0 1.0 1 21 165 185 165 186 0.90 7 27 0.025 1.2 9.6 0.1 2 23 331 352 330 352 0.91 8 27 1.7 84 3.9 4.8 1 23 358 380 358 380 0.97 9 27 0.069 3.3 8.3 1.3 1 12 386 397 386 408 0.77 10 27 0.00027 0.013 15.9 3.4 1 23 414 437 414 437 0.98 11 27 0.00061 0.03 14.7 5.2 1 23 449 471 449 472 0.95 12 27 0.0024 0.12 12.9 1.0 3 23 483 503 482 503 0.98 13 27 4e-07 1.9e-05 24.8 1.4 1 23 509 531 509 531 0.98 14 27 4.8e-05 0.0023 18.2 1.9 1 23 537 559 537 559 0.97 15 27 0.012 0.57 10.7 1.2 2 23 615 636 614 636 0.92 16 27 5.6 2.7e+02 2.3 2.4 1 23 642 664 642 664 0.93 17 27 0.13 6.3 7.4 2.6 1 21 670 690 670 692 0.90 18 27 0.0002 0.0097 16.3 8.9 1 23 698 721 698 721 0.97 19 27 0.00069 0.034 14.6 1.8 1 23 733 756 733 756 0.93 20 27 0.027 1.3 9.6 0.9 2 23 766 787 766 787 0.97 21 27 4e-06 0.00019 21.6 2.3 1 23 793 815 793 815 0.99 22 27 0.00043 0.021 15.2 3.4 1 23 821 844 821 844 0.96 23 27 0.0085 0.41 11.1 3.6 1 23 858 881 858 881 0.93 24 27 0.0002 0.0096 16.3 0.4 3 23 892 912 890 912 0.96 25 27 2.1e-06 0.0001 22.5 3.1 1 23 918 940 918 940 0.99 26 27 0.00014 0.0069 16.7 1.5 1 23 946 968 946 968 0.96 27 27 0.046 2.2 8.8 0.2 1 21 974 994 974 995 0.94
Sequence Information
- Coding Sequence
- ATGGAAAAGGTACAAGCTGAAGAACATAAGAATTTCCATTCTGGCGAAATGCCGTTTAACTGTTCGAAATGTGGAAAAAATTTCATGTATTCCTGGCTGTTTAATACACACAAAAGATTCTGGCATCGTCCAACAACAAAAGAAGATGATCACTACTATTGTCTTTTGTGCAGATTAACATTTACCACCGATTCCGGCTTACGAAAACATCAGGCACGTAAACACGAGCCAAAAGTTCAATCGCTATGCGATGTGTGTGGTAAACGGCTATCCAGTTCGGAAATGTTAAAGTTTCATAAACGAACTCACACTGGCTATAAACCATATACTTGTGAGACATGCGGTAAAAGCTTTATAAAGAAAGAGTTACTAAAAGAGCATGAACGTGTTCATACTGGCGAAAAACCATTCCATTGCAAATTTTGTGATAAAGGATTCAGTCAAAGGGGGCCATTGAAGATTCATACACGAATTCATACCGGTGAACGGCCGTATGTGTGCCGATTATGTGGCAAGGGGTGTATTTGTAAAAGTGTTCTTGATGCTCATATTAAATCTTGTAATGGACCGTACTTGGAATCCAcacttttaaataaattgatttacgGACCAGGAATATCAATAACGCCTGTAAAACTGGAGAATTGCACTAGTACAGCGACCGCTACCACTACCACCATCAACACCATGGATAATAATTTACTAAACACAAGTACAATAAATCAATTGGACATTGCTTCATTGACGAAAATCTTTCAAAATGAATTGACTGATGAAAAAGATGATTTGGATCTTCAATCGAAAAACCTTTTGCAATGTTTGAtgaatgatgatgatcaaGATTCATCTGCAATTGGTGATTTAAAACATGAAGATAATATATTGAAGTGTTTATTAAAacctaaaaagaaaaaatcgaaaagtagtaaaaataataataaagagaaacaAGACAAACATCCACCGCCAATTGAATTAGATGAACCGATACAATGTGATGTTTGCAATGAAACGTATAGAAACAATGTTGCATTTGCTCTACATTCAATtgagcattcaaatgataagAAATACTCGTGTCATTTATGTGATTATCGTAACACATCGAAGTATCATACGGAGATGCATGTGCGTGCGCATGAAGGCACAACAAAATTCAAATGTGAAATTTGTGGCAAAGGATTTACAATTGGTACACATGCAATCGAACATAAGTATTTCCATACTGGCGAGAAACCATTTCAATGCGAAATTTGTGGGAAACATTTTATGTTTTCGTGGTTTTTAACTAGTCACCGAAGATCTCAGCATTGGGAAATTGTTACTGGCAGTCCATTAGTGAAATATGATTGTACAATTTGTAATAAACATTATACGTCGTCGACAGGCTTGAAACGTCATAATATGAGTCATCATGGGTCACCAGGGTCAGACTCATCCGTACTATGCGATATCTGTGGAAAAAGTCTATCATCGAAAGAGAAACTGAAATTCCATCGTCGCATTCATACGGGTTACAAGCCATTTACATGTGAAATTTGTACGAAAAGTTTCACAAGAAAAGAACAACTAAAGGAGCATGAACGTGTTCATACAGGCGAGAAACCGCATATTTGTCGTTTCTGCGGTAAAGGTTTCACGCAACGCTCACCGCTACGTATACATGAACGTACACATACCGGCGAACGTCCATATAAATttgaaaatattaatttcgaTGCTAAGCAAAAATCAGTGGATAATGTCGATGCGAAACCTAGAGTAAAACGCCACGCAATAAAAATCAAGTGGGAAATGAATTTAAGACATCAACGTCCACCTACCGCCGCCAGTCAATCAATAGAGTGTCATATTTGTCATAAAACTTATGATAATAATGTAGCATTTGTTCTGCATTCACTTGAGCATTCAAAAGATAATAAGTACTCGTGTCACTTATGCAATTATCGCAATGCGTCAAAGTATTATACGGAAATCCATGCCAGCACACACGAAAGTGCCTTGAGCTTTAGATGTGAAATATGTAATGAACAGTTCACATCTCGTGAAGGTAAAATTGAACATAAACGTTGTCATATAGGCGAAGAACCGTATCATTGTTCATACTGTGATAAAAGTTACACGCATAAGAAAAGTTTGAGAAACCATCGAAAATCTAAACATTGGGAAATTATTACTGGCGCTCCATTGGAACAATATGATTGTAAGATATGTAATAAACATTACGTATCAGCTACCGGATTGAAAAGGCACAATTTAAGCAACCATAATACAGAAGGTATTGATATCTCTGCCGTTTGCGAAGTATGCGGTAAACGAATATCGAAAAAGGAGCGATTAAAATTCCATATGCGACTCCATACTGGCTATAGACCGTTCAAGTGTGACGTTTGTGGTAAAGCATTCCCCGAAAAACAACATTTAAAATATCATATGTACACTCATAGTGGAGAACGGCCATTTCAATGTGAAATTTGTGGGAAACATTTTATGTCTCGGCCGCATCTGACCGGCCATCGTACGTCACAACATAGACAAAGCGATTCAATTAAACAGGAACCATTGGATAAATATGATTGTAAAACTTGCCAGAAACATTATACATCATATGCAGGGTTAAGACgtcataatataaaatatcacGGATTGCCAGTAGCCACTTCATCTGTCATTTGTGACATATGTGGAAAAACGTTATCatcaaaagaaaatttgaaattccATCGACGCATCCATACAGGCTACAAACCGTATAAATGTGACATTTGCGAAAAGTGTTTTTCAAAAAAGGAACAATTAAAAGAACATGAACGTGTTCATACTGGTGAAAAACCACATATCTGCCGATTTTGCGGCAAAGGTTTCACACAACGTTCGCCACTTCGTCTGCATGAACGTATTCATACTGGCGAGCGGCCGTATAAATGTATTATGTGTGAAAAAGCATTCATTTCAAAAGCTACAATGGATACACATATGAAAAGTTGTTCTACGAATAAAATGGAATATCAAATAAGCGACGTTCACTAG
- Protein Sequence
- MEKVQAEEHKNFHSGEMPFNCSKCGKNFMYSWLFNTHKRFWHRPTTKEDDHYYCLLCRLTFTTDSGLRKHQARKHEPKVQSLCDVCGKRLSSSEMLKFHKRTHTGYKPYTCETCGKSFIKKELLKEHERVHTGEKPFHCKFCDKGFSQRGPLKIHTRIHTGERPYVCRLCGKGCICKSVLDAHIKSCNGPYLESTLLNKLIYGPGISITPVKLENCTSTATATTTTINTMDNNLLNTSTINQLDIASLTKIFQNELTDEKDDLDLQSKNLLQCLMNDDDQDSSAIGDLKHEDNILKCLLKPKKKKSKSSKNNNKEKQDKHPPPIELDEPIQCDVCNETYRNNVAFALHSIEHSNDKKYSCHLCDYRNTSKYHTEMHVRAHEGTTKFKCEICGKGFTIGTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRSQHWEIVTGSPLVKYDCTICNKHYTSSTGLKRHNMSHHGSPGSDSSVLCDICGKSLSSKEKLKFHRRIHTGYKPFTCEICTKSFTRKEQLKEHERVHTGEKPHICRFCGKGFTQRSPLRIHERTHTGERPYKFENINFDAKQKSVDNVDAKPRVKRHAIKIKWEMNLRHQRPPTAASQSIECHICHKTYDNNVAFVLHSLEHSKDNKYSCHLCNYRNASKYYTEIHASTHESALSFRCEICNEQFTSREGKIEHKRCHIGEEPYHCSYCDKSYTHKKSLRNHRKSKHWEIITGAPLEQYDCKICNKHYVSATGLKRHNLSNHNTEGIDISAVCEVCGKRISKKERLKFHMRLHTGYRPFKCDVCGKAFPEKQHLKYHMYTHSGERPFQCEICGKHFMSRPHLTGHRTSQHRQSDSIKQEPLDKYDCKTCQKHYTSYAGLRRHNIKYHGLPVATSSVICDICGKTLSSKENLKFHRRIHTGYKPYKCDICEKCFSKKEQLKEHERVHTGEKPHICRFCGKGFTQRSPLRLHERIHTGERPYKCIMCEKAFISKATMDTHMKSCSTNKMEYQISDVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -