Pcyl014953.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- Sall1
- Assembly
- GCA_949748235.1
- Location
- OX456494.1:8989211-8993490[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.26 13 6.5 0.4 2 23 90 111 89 111 0.91 2 29 0.079 3.8 8.1 0.3 2 23 118 140 117 140 0.96 3 29 0.021 1 9.9 1.0 2 23 154 176 153 176 0.92 4 29 2e-05 0.00096 19.4 0.8 1 23 204 227 204 227 0.94 5 29 0.00061 0.029 14.8 2.2 1 23 233 255 233 255 0.96 6 29 1.3e-06 6.5e-05 23.1 1.7 1 23 261 283 261 283 0.99 7 29 0.0037 0.18 12.3 1.0 1 21 289 309 289 310 0.95 8 29 0.013 0.61 10.6 0.1 2 20 342 360 341 362 0.93 9 29 0.044 2.1 8.9 1.1 2 23 376 397 375 397 0.96 10 29 0.002 0.096 13.1 0.4 2 23 455 476 454 476 0.95 11 29 0.2 9.8 6.8 2.0 1 23 513 535 513 535 0.94 12 29 0.001 0.051 14.0 1.5 1 23 541 564 541 564 0.95 13 29 0.1 4.9 7.8 0.1 2 20 576 594 576 596 0.93 14 29 0.00028 0.013 15.8 0.3 1 23 613 635 613 635 0.95 15 29 1e-05 0.0005 20.3 0.3 1 23 641 663 641 663 0.98 16 29 0.00021 0.01 16.2 4.4 1 23 669 691 669 691 0.99 17 29 0.00035 0.017 15.5 0.7 1 21 697 717 697 718 0.96 18 29 3.3 1.6e+02 3.0 1.9 1 10 778 787 778 798 0.82 19 29 0.042 2 9.0 2.6 2 23 819 841 819 841 0.97 20 29 0.022 1.1 9.9 0.3 1 23 863 885 863 885 0.97 21 29 0.013 0.64 10.5 1.8 1 23 889 912 889 912 0.95 22 29 0.007 0.34 11.4 0.1 1 23 918 942 918 942 0.96 23 29 0.0039 0.19 12.2 0.4 1 23 948 970 948 970 0.96 24 29 0.0026 0.12 12.8 0.7 1 23 976 999 976 999 0.97 25 29 0.006 0.29 11.6 0.5 2 23 1011 1033 1010 1033 0.95 26 29 0.00021 0.01 16.2 1.4 3 23 1046 1066 1044 1066 0.96 27 29 0.16 7.6 7.2 2.9 1 23 1072 1094 1072 1094 0.91 28 29 3.9e-06 0.00019 21.6 0.9 1 23 1100 1122 1100 1122 0.98 29 29 0.00067 0.032 14.6 0.4 1 21 1128 1148 1128 1149 0.95
Sequence Information
- Coding Sequence
- ATGATCGACTATCGagcgaataataataaacagaaCAAAGTGAGAGTGAGCAAGACAGTGAAAACGAGTTACGTCAAACATACTCCGACACGACGAGAAACTGACGAGAAATGCTTTTGGCCATGTTATCGGTGCCCACAAATATTCGCTGAAGAGTCGATATTATTGGAGCATATAAAAGTATGCGGTCCTTATGCAACTTCTGAGAAAAAGATTACATTGATATCCAAAGACACGTCAGAAGAAGCAGCTGCTACTGGAGCAATGGAATGTAAAATATGCAGTGAGACATTCCAATCGATTTTGGAACTGGCCCATCACAGTTTGGAACACAATTCATCAAAGGAAATGTCGTGTCCGCTTTGCAATTTCGAAACTGAATCTGAACCATTGCTGAAACTCCATCTGCGTAGAAAACATGACAATACTGGTCGAAAAGCACTGCTCTCAACACCAGTTGAATGTGTTGTCTGTAAAAAAGAGTTTAATACCACCGCGAAATTATACAATCATCAAATTGGTTGCCATAAACCATCGATTCAAATTATACCATCGATGGGTGCCCGTTTCGATTCATCTTTACCGAAAATTCGGCGTGCCCCAACTGTGTATCTTTGCGATAGTTGCGGTAAGAATTTCAGTTCAAAATATCGATTGGAACGACATATTCGAGCAATGCATCAAGGTCTAAAGCCGCACATATGCCGATTTTGCGGTAGAGCCTTTACTGGTAAAGATACAATGAAGAAACACGAACGTATTCATACTGGTGAGAAACCGTACTCGTGCGAGTACTGCGGCCGATGTTTCCGGCAACCAGGTCCATTTCAAGTGCATTTGCGTACGCACACCGGCATAAGACCTTATGTTTGCAAATTCTGTAATAAGGGATTTATAACAAATCAGAGCCGAAAAACGCATATAATGAAACGTTCTTCAAACAGATTAACAAAACAACGACGAACATCATCGAAATTTTCTTACGGCGAAAATTGTGataaacgaataaaaaaaaagtcttGGATGTGCAGTAAATGTGAATTAACATTTcctaaacaaaaattattaaaagcgcataaaattgaaaaaaaatgcgACATAACGAAAAGCAAAGTTCATTTCTGGCAGTGCAAATACTGCGAAGAGATCCTTCAAACGCAAAAACTTCTTAAACTCCATAAAAAGCAACACAAAAATGATTCTACcgaacaacaaaaacaacatcataataatgatgaagatGAGGAGCCAACATATAAATTTGATGAAATTCAAGATCTATACATTTGCGGTGTTTGCTCGGCAGAGTTTCAAGAAAGGGCTGAAGTTGAACCGCACATAAAACAGCATGTGAAACGTATGAAATGCAAGGAATGCAATGAAATTTTTAAGAACGCATATGAATTAGGAATTCATTCATCGAAACATGATCCGAATCAAAAAATACATTGCCCGTTATGCTCGTATATCTGTTCGAATCCAAATCCATATAGTTTTAAGGCTCATATTAATTATGTGCATCTGAAACTGTTTCCATATTATTGTAAAACTTGTGCGAGAGGCTTTAAGCAGTTCAAAACGTACGAGGAACATAATAATGCGCATACAGGACAAAAGCCGTATGTTTGTGTTGTGTGCGAAAAGGGTTTCACATATCAAAAGTATCTGCATGTTCATCAAGTGCGTAACCATCAAGTTGGCATCACTGGCAATAAAATCGAAAACGAGTGTCGTACATGTAACCGGTATTTCTATAAGCCAGAAGCATTAAAAGACCATGTGGATGTGTGCTACAAGAAAAGGAAGAAAGTGAAAAGCGACACGCCGATTAAAGCGTTTCTATGCGACTCGTGCGGTCAAACGTTTACAGAAAAAGCGAAATTATTGGAACATTTAAGGGTGCATAAAGGCGATTTGCCATTTGTGTGCAGTTGGTGTGGTAAACGATTTCCAGTCAAAGCCTACTTGAAAACGCATGAACGTGTTCATACCGGCGAGAAACCATATTCGTGCGAGTACTGTGGAAAACGTTTCGGACACCATGCGCCTTTTCGTGTACATCGACGTACGCATACTGGCGAACGGCCTTATGTTTGCGATTTCTGCAATAAGGGATTCACAACTAATCAAGGTTTGAAGTTGCATAAAAGAAATTGTCCCGACAATCAGTATGGAAAAGTTAGAAATTTGTATTTGGGACAAGCTACgaATTGTGCCCGTTCGAATTTATCACATCCACGGCGTAGCAGGCGTCGGATAACTAACAATCATCGTAAAGGGGACacgttaaaatatttaaaatcagaaATTGAAAGTGACGGATATAATTCATTTGAATGTAAAATCTGTAAAACAACATTCTTGACAAGCGATTTGTCGTATCAACATCAATGCGAGTGCAAATCAGCCTTTTATCCAAAGTCGGCTAATGATTACGAAACGGCTAGTCAAAGGACATGCAAAGAATGCCAGTCAACATTTATAACGATAAAGCAATTTAGAGAGCATCGAAAAAAGCTGCACGCTTCATCGCTGAAGGAGTACGTTGAGGAGCATACATTTTCGTTTGACGAGTTACAAGAGATTTTCATTTGTAACACTTGCTCAGCGGAATTTAAAGAGAAATACGAAGCAGAGGTCCATTTAAAATCGCATAAGGAAGTTTTTGATTGTTCATTATGTAACAGAAAATTTCAAACGTTGTTCCAACTAGGAAATCATTTGAAAAACTCACATAATGAAAATGAAGAATTCACCTGTCCATTATGTTCGGAATTAAGTTTTCCCAAAGCCTCACTACTGATTAAACACATAAATGTCAAACATCAAAATAGTTATTTGTTCAATTGCAACATTTGCTCGAAAGGATTCAATAGTAGAACACTGTGGATTGAGCATAGCAATATCCATGCGGGTTTGAAACCGTTTGTTTGTGTTGTGTGCGATGCACGTTTTACATATTCGAAATCTGTTACGACGCATCAGTTACGTACGCATCGCGTGGAAATTCTAGGTAAAGATCATAGGACTGAATGTACATTTTGTAAGAATCGATTCGTATCGATCGCATCGCTACAGCGTCATATCCAGCAAATCCATAATAAGCCAAGACCACCGAAAGAGAAAAGTCACTTGTGCGACATCTGCGGTATGGCCTTCACGAAGAAGAATAAAATGGCGATACATCAGCGTACGCACACTGGTGTGCGGCCCTATCCATGTCAGTTCTGTGAAAAAAGTTTCTCGAAATCGGGTGAACGTAACTGCCACGAACGGATTCACACCGGCGAACGGCCGTATAATTGCGAATATTGCGGACAGAAATTCCGCCAATCGGCACCATTCAAAGTACATATACGGACGCATACTGGTGAACGACCGTACGTTTGTGATCTTTGCTCAAAAGGCTTCACAACAAATCAAGGCTTGAAATTGCATAGGAAGAATTGTGGTAATCTGGCAACCATGTATTCAGTGTAA
- Protein Sequence
- MIDYRANNNKQNKVRVSKTVKTSYVKHTPTRRETDEKCFWPCYRCPQIFAEESILLEHIKVCGPYATSEKKITLISKDTSEEAAATGAMECKICSETFQSILELAHHSLEHNSSKEMSCPLCNFETESEPLLKLHLRRKHDNTGRKALLSTPVECVVCKKEFNTTAKLYNHQIGCHKPSIQIIPSMGARFDSSLPKIRRAPTVYLCDSCGKNFSSKYRLERHIRAMHQGLKPHICRFCGRAFTGKDTMKKHERIHTGEKPYSCEYCGRCFRQPGPFQVHLRTHTGIRPYVCKFCNKGFITNQSRKTHIMKRSSNRLTKQRRTSSKFSYGENCDKRIKKKSWMCSKCELTFPKQKLLKAHKIEKKCDITKSKVHFWQCKYCEEILQTQKLLKLHKKQHKNDSTEQQKQHHNNDEDEEPTYKFDEIQDLYICGVCSAEFQERAEVEPHIKQHVKRMKCKECNEIFKNAYELGIHSSKHDPNQKIHCPLCSYICSNPNPYSFKAHINYVHLKLFPYYCKTCARGFKQFKTYEEHNNAHTGQKPYVCVVCEKGFTYQKYLHVHQVRNHQVGITGNKIENECRTCNRYFYKPEALKDHVDVCYKKRKKVKSDTPIKAFLCDSCGQTFTEKAKLLEHLRVHKGDLPFVCSWCGKRFPVKAYLKTHERVHTGEKPYSCEYCGKRFGHHAPFRVHRRTHTGERPYVCDFCNKGFTTNQGLKLHKRNCPDNQYGKVRNLYLGQATNCARSNLSHPRRSRRRITNNHRKGDTLKYLKSEIESDGYNSFECKICKTTFLTSDLSYQHQCECKSAFYPKSANDYETASQRTCKECQSTFITIKQFREHRKKLHASSLKEYVEEHTFSFDELQEIFICNTCSAEFKEKYEAEVHLKSHKEVFDCSLCNRKFQTLFQLGNHLKNSHNENEEFTCPLCSELSFPKASLLIKHINVKHQNSYLFNCNICSKGFNSRTLWIEHSNIHAGLKPFVCVVCDARFTYSKSVTTHQLRTHRVEILGKDHRTECTFCKNRFVSIASLQRHIQQIHNKPRPPKEKSHLCDICGMAFTKKNKMAIHQRTHTGVRPYPCQFCEKSFSKSGERNCHERIHTGERPYNCEYCGQKFRQSAPFKVHIRTHTGERPYVCDLCSKGFTTNQGLKLHRKNCGNLATMYSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -