Basic Information

Insect: Platypus cylindrus
Gene Symbol: -
Assembly: GCA_949748235.1
Location: OX456488.1:20190976-20196206[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.068 3.3 8.3 3.6 1 23 437 459 437 459 0.98

2 18 0.00015 0.0071 16.7 1.9 1 20 465 484 465 487 0.94

3 18 6.4e-05 0.0031 17.8 1.6 1 23 493 515 493 515 0.98

4 18 2e-06 9.8e-05 22.5 2.7 1 21 521 541 521 543 0.95

5 18 1.7e-05 0.00081 19.7 4.7 1 23 549 571 549 571 0.99

6 18 3.6e-05 0.0017 18.6 5.3 1 23 577 599 577 599 0.97

7 18 1.4e-05 0.0007 19.9 7.5 1 23 605 627 605 627 0.97

8 18 1.9e-07 9.1e-06 25.8 1.9 1 23 633 655 633 655 0.98

9 18 9.8e-05 0.0048 17.2 6.7 1 23 661 683 661 683 0.97

10 18 1.2e-05 0.00057 20.1 6.8 1 23 689 711 689 711 0.98

11 18 4.5e-07 2.2e-05 24.6 3.1 1 23 717 739 717 739 0.98

12 18 2.8e-06 0.00013 22.1 7.8 1 23 745 767 745 767 0.98

13 18 6.7e-05 0.0032 17.8 8.2 1 23 773 795 773 795 0.98

14 18 2.3e-05 0.0011 19.2 7.7 1 23 801 823 801 823 0.98

15 18 4.2e-05 0.002 18.4 5.5 1 23 829 851 829 851 0.97

16 18 0.00035 0.017 15.5 0.3 1 23 857 879 857 879 0.96

17 18 0.12 5.8 7.5 5.0 1 23 889 911 889 911 0.98

18 18 3.5e-05 0.0017 18.7 4.0 1 23 917 939 917 939 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.068	3.3	8.3	3.6	1	23	437	459	437	459	0.98
2	18	0.00015	0.0071	16.7	1.9	1	20	465	484	465	487	0.94
3	18	6.4e-05	0.0031	17.8	1.6	1	23	493	515	493	515	0.98
4	18	2e-06	9.8e-05	22.5	2.7	1	21	521	541	521	543	0.95
5	18	1.7e-05	0.00081	19.7	4.7	1	23	549	571	549	571	0.99
6	18	3.6e-05	0.0017	18.6	5.3	1	23	577	599	577	599	0.97
7	18	1.4e-05	0.0007	19.9	7.5	1	23	605	627	605	627	0.97
8	18	1.9e-07	9.1e-06	25.8	1.9	1	23	633	655	633	655	0.98
9	18	9.8e-05	0.0048	17.2	6.7	1	23	661	683	661	683	0.97
10	18	1.2e-05	0.00057	20.1	6.8	1	23	689	711	689	711	0.98
11	18	4.5e-07	2.2e-05	24.6	3.1	1	23	717	739	717	739	0.98
12	18	2.8e-06	0.00013	22.1	7.8	1	23	745	767	745	767	0.98
13	18	6.7e-05	0.0032	17.8	8.2	1	23	773	795	773	795	0.98
14	18	2.3e-05	0.0011	19.2	7.7	1	23	801	823	801	823	0.98
15	18	4.2e-05	0.002	18.4	5.5	1	23	829	851	829	851	0.97
16	18	0.00035	0.017	15.5	0.3	1	23	857	879	857	879	0.96
17	18	0.12	5.8	7.5	5.0	1	23	889	911	889	911	0.98
18	18	3.5e-05	0.0017	18.7	4.0	1	23	917	939	917	939	0.98

Sequence Information

Coding Sequence: atgaataGCGAAAATCAGAATAGCATACAATCGGCATCTCATACCACAGCTAATAATAACGATGGTTCATCTCAAGGGCAAGCCCTCACAATTCCCACCGACTTGAGAGTAAATTCGACAGCTTTGAATGCAATGGCTTTAAGCAATGTTGCAAAATATTGGGTCTTAACAAATCTATTACCAGGTCCCATTCCACAAGTATATGGTTTACCAGGTACTGGACGTGATAATCAAGGAAAACTTCCTCAAGATGCTGTTTTAAGTCAACATGCAACTGGTTTATTACAGGCCGATTCGCAAATTTTGCTACAGCAGCACCCGCAAATTCCTGTTAACATTTCAACATCTCAAGGCGCTCTTAGTATACCGGCTGCAGCAATACATTTGGATCCATCACATCATCCTCTGCAGCAACAACAATCCGAGCATAATCCATTAAACCGCGATATTAGGCAAAATCACTCTCAGCAAAACCTGGTTCAGGTACAGGTGAATCAAGATAACATGGTTTCTGTTATCAACGAAAATGATGGAAAGCATCATCTTAAAGAAATGCTTGCAAATACCCAACAACAAATGCAAAACACCAATCAGCTACAACATCTTAATGAATCTCAACAACAAATGAATAATCAAGGTTTAACTGTTCAACAGTTACATCATCTACAGGCCCAGCAATCGATTCAACAGGTAAGAATGGAATCGACCTCAACGTCATCTTCAATGGAACATaatcaacagcagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacagcagcagcaacaacagcagcagcagcaacaacaacaacagcagcagcaacaatcACAAAATGATCAAAATACGCTAAATGCTGGAAATTTGGATatggtaaaagaagaaaaatcgATTCAATGTAAGTTCCTAAATAATGCCCAATTGGGACTACAGGAGGTAAAAGGAAATAATATTATGGATGTAAGGACCGCAGATGGtatagtTAAAATACAAGCCAATGTTCAAGAATCGGAcatgaataaaaatttagGTGTAGAGATGGTTCAAAGTTTATATAAAGTGAATGTCGATGACATCAATCAATTATTGGCTTATCATgaaatatttggaaaattgCAAACTCAAGgaGAAATGCCGAGTAATCCAAACATACCTGCCAGCACTAATAATGTCAATGTGCAGCAACCACCTAACCCGACCAATCTGCCAATAATAACGAAAACTGAACATGAACCATCAACAAGTAATTTACAGCCAAATGAGAATAATCCCAATTCAGTAATTGCGGCAAACAGTCATCAGTGTGATTTATGTTTAAaaacatttcaatttaaatatcaaGCAATTGTGCATAGACGATATCATAccgaaaaaaaacattttacatGCCAGGTTTGTGGAAAAGGTTTTCCGAATAGTCAAGAATTAACTAGACATGGCAAATGTCATTTAGGTGGCAGCATGTTTACATGTTCATTGTGCTTTCATGTATTTGCAAATGCCCCAACATTGGAACGACACATGAAACGTCATTCCACAGATAAACCGTATGCCTGTCCAACATGTGGCAAAACATTTGCTAGAAAAGAACATTTGGAAAATCACATTAGATGTCACACTGGTGAAACACCTTATCGATGCCAGTTTTGTGGAAAAAATTTCACCAGAAAAGAGCATATGGTTAACCATGTTCGTAAACATACTGGGGAAACTCCACATAGgtgTGATATATGTAAAAAATCTTTCACAAGAAAAGAGCATTTTATGAATCATGTAATGTGGCATACGGGAGAAACACCACACTGTTGTACTGTGTGTGGCAAAAAGTATACAAGAAAGGAGCATCTCGCGAATCATATGAGAAGCCATACAAATGATACTCCATTTAGatGTGAAATTTGTGGCAAGGCGTTTACAAGAAAAGAACATTTTACAAATCACATCATGTGGCATACAGGCGAAACGCCGCATCGCTGTGACTTTTGCTCGAAAACATTTACACGAAAAGAGCATTTACTAAATCATGTACGTCAGCATACTGGCGAATCTCCACATAAATGCGCTTATTGTCAAAAAACGTTCACAAGAAAGGAACATTTAACCAATCATGTTCGACAACATACTGGTGAAACACCATTTAAGTGTACTTATTGTCCAAAAGCATTTACAAGAAAAGATCATTTAGTTAACCATGTTCGTCAACACACCGGCGAATCTCCACATAAGTGTACATATTGCACAAAATCATTTACAAGAAAGGAGCATTTGAATAATCATATTAGACAGCACACGGGGGAATCCCCTCACAAATGTCATTTCTGTGCGAAATCGTTTACTAGAAAAGAGCATTTAACGAACCATGTGCGAATTCATACAGGTGATTCACCACATCGTTGTGAGTTTTGCCAGAAAACGTTTACGAGAAAAGAACATTTAACCAATCATTTAAGGCAACATACAGGCGACACTCCGCATTGTTGTAATGTGTGTTCGAAGCCTTTCCCTCGAAAGGAGCATTTATTAATTCATATGCGTTCGCATACTGGAGAAAGACCATTTATTTGTAATGAATGTGGAAAGTCGTTCCCGCTAAAAGGCAATCTTCTGTTTCACGCCCGATCTCATAATAAGGGTCAACAAGCTGAAAGGCCATTTAGATGCGATTTATGTGAAAAAGATTTTATGTGTAAAGGTCATTTAGTTTCACATCGACGATCGCATGGCGGAGAGAAACCGTTTCATTGTACACAATGTAACAAATCATTTGCTGAAAAGGGCAATTTAATGAGACACAGTCGAAAGCATATATTGGATAGAGAAAAGGCTGAACAAGCAGCGGCTGCGGCAGCggcggcagcagcagcaaATAATGTACAGCAACAAAATCAAAATCCTGCAGGAAATCTTCAAATGCCTCCTCAAGTACAACATGTGAATCAACCTGGACAACAACTTCCTAATACAAACATTGTACCAAGTGGGCATTTAATGCATCCAACACCAAATCATCATTCGGTTGTTGTACCGACTAACGGTAGCGTTTTAGCATCGTATTAA
Protein Sequence: MNSENQNSIQSASHTTANNNDGSSQGQALTIPTDLRVNSTALNAMALSNVAKYWVLTNLLPGPIPQVYGLPGTGRDNQGKLPQDAVLSQHATGLLQADSQILLQQHPQIPVNISTSQGALSIPAAAIHLDPSHHPLQQQQSEHNPLNRDIRQNHSQQNLVQVQVNQDNMVSVINENDGKHHLKEMLANTQQQMQNTNQLQHLNESQQQMNNQGLTVQQLHHLQAQQSIQQVRMESTSTSSSMEHNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSQNDQNTLNAGNLDMVKEEKSIQCKFLNNAQLGLQEVKGNNIMDVRTADGIVKIQANVQESDMNKNLGVEMVQSLYKVNVDDINQLLAYHEIFGKLQTQGEMPSNPNIPASTNNVNVQQPPNPTNLPIITKTEHEPSTSNLQPNENNPNSVIAANSHQCDLCLKTFQFKYQAIVHRRYHTEKKHFTCQVCGKGFPNSQELTRHGKCHLGGSMFTCSLCFHVFANAPTLERHMKRHSTDKPYACPTCGKTFARKEHLENHIRCHTGETPYRCQFCGKNFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHCCTVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCAYCQKTFTRKEHLTNHVRQHTGETPFKCTYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLNNHIRQHTGESPHKCHFCAKSFTRKEHLTNHVRIHTGDSPHRCEFCQKTFTRKEHLTNHLRQHTGDTPHCCNVCSKPFPRKEHLLIHMRSHTGERPFICNECGKSFPLKGNLLFHARSHNKGQQAERPFRCDLCEKDFMCKGHLVSHRRSHGGEKPFHCTQCNKSFAEKGNLMRHSRKHILDREKAEQAAAAAAAAAAANNVQQQNQNPAGNLQMPPQVQHVNQPGQQLPNTNIVPSGHLMHPTPNHHSVVVPTNGSVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -