Pcyl014981.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- ZEB2
- Assembly
- GCA_949748235.1
- Location
- OX456494.1:9073803-9079893[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.5e-05 0.0012 19.1 0.8 2 23 31 53 30 53 0.94 2 23 0.0081 0.39 11.2 0.7 1 23 58 81 58 81 0.93 3 23 7.4e-05 0.0036 17.6 1.0 1 23 88 111 88 111 0.97 4 23 0.0013 0.061 13.8 0.2 3 23 119 140 117 140 0.95 5 23 0.13 6.3 7.4 0.6 2 23 147 171 146 171 0.86 6 23 6.7e-05 0.0032 17.8 0.9 2 23 178 199 177 199 0.94 7 23 0.66 32 5.2 0.5 1 23 206 228 206 228 0.95 8 23 0.00033 0.016 15.6 0.3 1 23 234 256 234 256 0.95 9 23 2.8 1.4e+02 3.2 2.5 3 13 264 274 262 276 0.89 10 23 8e-06 0.00039 20.7 0.7 3 23 310 331 308 331 0.96 11 23 4.5e-05 0.0022 18.3 2.4 1 23 347 370 347 370 0.98 12 23 2.9e-05 0.0014 18.9 0.2 1 23 387 409 387 409 0.96 13 23 0.00043 0.021 15.2 1.8 3 21 417 435 415 436 0.96 14 23 9.3e-06 0.00045 20.5 2.6 1 23 473 496 473 496 0.96 15 23 5.4e-05 0.0026 18.0 0.4 1 23 501 524 501 524 0.93 16 23 0.00024 0.012 16.0 1.9 1 23 529 552 529 552 0.97 17 23 0.0017 0.081 13.4 0.8 2 23 560 582 559 582 0.96 18 23 0.00028 0.014 15.8 0.5 3 23 590 611 589 611 0.94 19 23 0.0015 0.074 13.5 0.1 3 23 618 641 616 641 0.89 20 23 2.5e-05 0.0012 19.1 2.4 2 23 648 669 647 669 0.94 21 23 0.0053 0.25 11.8 0.5 1 23 676 698 676 698 0.96 22 23 0.00079 0.038 14.4 0.4 1 23 704 726 704 726 0.95 23 23 0.00029 0.014 15.8 3.0 3 23 734 755 732 755 0.97
Sequence Information
- Coding Sequence
- ATGGATCAGAAAGAGGACTATAAAGATTCTAAACAGCGGTTCTCGAACCAAGTGCAaccgaaaagaaaaaaaaccatcAGTAAACCTGTTAGTTGTCCGGATTGTTCAAAAACATTTGCATTTAGAAGTAGTTTCACGAAACATTATAATTTAGTTCATAAGAGCGTGAGATTTACATGCGCAGAATGTTCGAAAACTTTTAGTTTTAAAGCTGGTTTAGACTTTCACATTAACAAGATCCATAAGAATAGCATTCCGGATTACCAGTGCGACTTTTGTGGGAAAACATATGCTGGAAGAAGTGGCCTAAAGTATCATAAAAATCGAGatcatttgaatatttttaaaatgttttgcGAAATATGCGGCAAGGGATTTCAAACCGAAAGTGTGTTGAATATTCATAAGAAAAATGTTCACATTAAGGGCACGTTATTGACGTGCAAGGAAGAGGGTTGTGGGAAGACGTTCAAGTGTGAATCAGGATTATACTACCATGTATTAGCAGTTCACAAGGAGAAGCAATATCTGATTTGTGACCAGTGCGACAAAGTATTTACACATCCGGTTTTATATCAGAAACATTTACTGTTTCATAAGAAAGGCCGCAAGCAATTCACATGCATAATTTGTAAGAAAAATATGAGCTCATCTCAAGCTTATCAAGACCATGTAAGAGCCCATAGTGGGGAAAAACCATTTATTTGTGAATTTTGTGGAAAAGGATTTTCCGCCCAAAAATATCTGCGAGTCCATAAAGTTGTCCATACAAAAGAAAGACCTTTCGGTTGTAAATTGTGCGAAAAGACATTTTCTCAATGCGGTTCCCCACATGTTTCCATCACTTCCGTGAAATCAACAAAGGAGAAAGCAAATTGTAAAACATCgctattaaaacaaattaagaaaaaaatcgaaCCAGTTAATTGTCCGGAATGTTCTACGACATTTACTTTAAAATCCAGTCTTAATCGACACCTTCGAAATATCCATAAAATTGAGAAGCGTAAAAGAATATGTGCAGATTATCCACGAGTGTATAAATGTGACGTTTGTGATAAAAGTTATAGAAAAACGAATTCGCTGACATACCATCAAAATAAAGACCATTTCAAAATTTATAAGGATCATGTTAGAGCCCATAGTGGAGAGAAACCGTTTGTATGTGAGATTTGTGGAAAAGGATTTTCTGCGAAAAAATATCTTCGAGCCCATAAAGTTGTACATACAAAAGAGAGGCCTTTCGGTTGTAAATTGTGCGAAAAGACATTTTCTCAATGTGGTTCATTGACTTTGCATATGAAAAACCCTAATTTTGCTACTGCATATTTGAAAATGGTTGACAGCACCGGCAAACAAAGAAATTGCAAAAAGTTGTTGGATAACCTTAAGTCGCTCGAGAATGGGAGCGATTCGTTCAATTGTTCGAAATGTTCAAAAACCTACTCAACGAAGGGCAGCCTTACCAGACATCGTAATTCAGTTCATAAAAGTTTGAAATATTCATGCCCAGAATGTCCAAAAACGTATGCGTCAAGAAGCAGTTTTCTTACACATTACGGATCGGTCCATAAGCATTTGAGGCATTCTTGTCCAGAGTGttcgaaaatatttaaaacaaaagcaGCTGTTGACCATCACATTAAAAGGATTCATAAAAATACCATTCCGGATTGTCAGTGTGATTTGTGTGGGAAAACTTATGCTGGCGAGGGTGGATTAACGTATCATAAAAATACGACTCACTTCAATATTTCCAAAGTATTTTGCGAAATATGCGGCAAAGGATTTCAATATCAGAGTTTCCTGATCCGGCATAAAAAAGATGTGCATATCAAGGACACGATCATTTGTAAGGAAGAGGGTTGTGACAGAACGTTTACAAGCAAATCTGGATTATACTATCACGTGTTAGCAGCtcataaagagaaaaaagaaatgacTTGTAATCAATGCGGCAAGGTGTTTACACATCCCTCTCTATATAAACAACATTTGTATTTTCATAGAAAGGGCCGTAAACAATTTACTTGCATTATTTGCAAGAAGAAACTGAGCACCGCCGATTCTTATCAGGATCATGTTAGAATCCACAGTGGCGAGAAACCTTTCATATGTGAATTCTGTGGAAAAGGATTTTCAGCTAAAAAATATCTTCGAGGACATCGTGTTGTGCATACAAAAGAGAGACCTTTCGGCTGTAAAGTGTGTGAGAAAAGATTTACTCAACGCGGTACTTTGACTATTCATGTGAAAAAGTGtcatgtaaataaaaattcataa
- Protein Sequence
- MDQKEDYKDSKQRFSNQVQPKRKKTISKPVSCPDCSKTFAFRSSFTKHYNLVHKSVRFTCAECSKTFSFKAGLDFHINKIHKNSIPDYQCDFCGKTYAGRSGLKYHKNRDHLNIFKMFCEICGKGFQTESVLNIHKKNVHIKGTLLTCKEEGCGKTFKCESGLYYHVLAVHKEKQYLICDQCDKVFTHPVLYQKHLLFHKKGRKQFTCIICKKNMSSSQAYQDHVRAHSGEKPFICEFCGKGFSAQKYLRVHKVVHTKERPFGCKLCEKTFSQCGSPHVSITSVKSTKEKANCKTSLLKQIKKKIEPVNCPECSTTFTLKSSLNRHLRNIHKIEKRKRICADYPRVYKCDVCDKSYRKTNSLTYHQNKDHFKIYKDHVRAHSGEKPFVCEICGKGFSAKKYLRAHKVVHTKERPFGCKLCEKTFSQCGSLTLHMKNPNFATAYLKMVDSTGKQRNCKKLLDNLKSLENGSDSFNCSKCSKTYSTKGSLTRHRNSVHKSLKYSCPECPKTYASRSSFLTHYGSVHKHLRHSCPECSKIFKTKAAVDHHIKRIHKNTIPDCQCDLCGKTYAGEGGLTYHKNTTHFNISKVFCEICGKGFQYQSFLIRHKKDVHIKDTIICKEEGCDRTFTSKSGLYYHVLAAHKEKKEMTCNQCGKVFTHPSLYKQHLYFHRKGRKQFTCIICKKKLSTADSYQDHVRIHSGEKPFICEFCGKGFSAKKYLRGHRVVHTKERPFGCKVCEKRFTQRGTLTIHVKKCHVNKNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -