Basic Information

Insect: Platypus cylindrus
Gene Symbol: -
Assembly: GCA_949748235.1
Location: OX456494.1:9010501-9013707[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.093 4.5 7.9 0.2 2 23 15 36 14 36 0.91

2 26 3.4 1.7e+02 2.9 2.9 1 23 42 64 42 64 0.94

3 26 0.017 0.81 10.2 1.1 1 21 70 90 70 92 0.84

4 26 5.5e-06 0.00027 21.2 2.4 1 23 98 121 98 121 0.98

5 26 0.082 4 8.1 7.4 1 23 133 155 133 156 0.93

6 26 0.0027 0.13 12.7 0.4 3 23 169 189 168 189 0.98

7 26 7.6e-06 0.00037 20.7 0.5 1 23 195 217 195 217 0.99

8 26 2.9e-05 0.0014 18.9 0.3 1 23 223 246 223 246 0.97

9 26 0.029 1.4 9.5 4.5 1 23 260 282 260 283 0.93

10 26 9.1e-06 0.00044 20.5 0.6 2 23 293 314 292 314 0.97

11 26 2.7e-07 1.3e-05 25.3 0.6 1 23 320 342 320 342 0.98

12 26 2.6e-05 0.0013 19.1 0.9 1 23 348 370 348 370 0.98

13 26 1.1 55 4.4 0.2 1 12 376 387 376 390 0.81

14 26 0.7 34 5.1 0.1 2 23 432 453 431 453 0.90

15 26 1.5 74 4.1 4.6 1 23 459 481 459 481 0.98

16 26 0.1 4.9 7.8 0.8 1 15 487 501 487 509 0.80

17 26 0.00087 0.042 14.3 3.3 1 23 515 538 515 539 0.95

18 26 0.029 1.4 9.5 3.2 1 23 550 573 550 573 0.90

19 26 0.0016 0.079 13.4 0.1 3 23 585 605 584 605 0.98

20 26 8.5e-07 4.1e-05 23.7 2.2 1 23 611 633 611 633 0.99

21 26 0.00063 0.031 14.7 1.1 1 23 639 662 639 662 0.98

22 26 0.0047 0.23 12.0 5.6 1 23 676 698 676 699 0.91

23 26 5.2e-05 0.0025 18.1 0.5 2 23 709 730 708 730 0.97

24 26 1.1e-07 5.3e-06 26.5 1.3 1 23 736 758 736 758 0.98

25 26 2.6e-05 0.0013 19.1 0.5 1 23 764 786 764 786 0.97

26 26 7.2e-05 0.0035 17.7 1.1 1 22 792 813 792 813 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.093	4.5	7.9	0.2	2	23	15	36	14	36	0.91
2	26	3.4	1.7e+02	2.9	2.9	1	23	42	64	42	64	0.94
3	26	0.017	0.81	10.2	1.1	1	21	70	90	70	92	0.84
4	26	5.5e-06	0.00027	21.2	2.4	1	23	98	121	98	121	0.98
5	26	0.082	4	8.1	7.4	1	23	133	155	133	156	0.93
6	26	0.0027	0.13	12.7	0.4	3	23	169	189	168	189	0.98
7	26	7.6e-06	0.00037	20.7	0.5	1	23	195	217	195	217	0.99
8	26	2.9e-05	0.0014	18.9	0.3	1	23	223	246	223	246	0.97
9	26	0.029	1.4	9.5	4.5	1	23	260	282	260	283	0.93
10	26	9.1e-06	0.00044	20.5	0.6	2	23	293	314	292	314	0.97
11	26	2.7e-07	1.3e-05	25.3	0.6	1	23	320	342	320	342	0.98
12	26	2.6e-05	0.0013	19.1	0.9	1	23	348	370	348	370	0.98
13	26	1.1	55	4.4	0.2	1	12	376	387	376	390	0.81
14	26	0.7	34	5.1	0.1	2	23	432	453	431	453	0.90
15	26	1.5	74	4.1	4.6	1	23	459	481	459	481	0.98
16	26	0.1	4.9	7.8	0.8	1	15	487	501	487	509	0.80
17	26	0.00087	0.042	14.3	3.3	1	23	515	538	515	539	0.95
18	26	0.029	1.4	9.5	3.2	1	23	550	573	550	573	0.90
19	26	0.0016	0.079	13.4	0.1	3	23	585	605	584	605	0.98
20	26	8.5e-07	4.1e-05	23.7	2.2	1	23	611	633	611	633	0.99
21	26	0.00063	0.031	14.7	1.1	1	23	639	662	639	662	0.98
22	26	0.0047	0.23	12.0	5.6	1	23	676	698	676	699	0.91
23	26	5.2e-05	0.0025	18.1	0.5	2	23	709	730	708	730	0.97
24	26	1.1e-07	5.3e-06	26.5	1.3	1	23	736	758	736	758	0.98
25	26	2.6e-05	0.0013	19.1	0.5	1	23	764	786	764	786	0.97
26	26	7.2e-05	0.0035	17.7	1.1	1	22	792	813	792	813	0.96

Sequence Information

Coding Sequence: ATGCAATATCAACCGCATCCAGCGCCAGCAATGGACCCAATAGAATGTGGTACATGttctaaattgtttaaaaataatgtggAATTTATTTTGCACTCAATTGAGCATTCAAATAATAAGAAGTACTCGTGTCATTTATGCGATTATCGGAATGTATCGAAGTATTATACGAAGATGCATGCGCGCGCTCATGAAGGCACCACCAAATTCAAATGTGAGATTTGTGATAAGGCATTCATAAATGGTACACACGCAGCTGAACATAAATACTTCCATTTCGGCGAGACACCATTTCAATGTAAGATTTGCGATAAAAGTTTTATGTATTCGAGGAGATTAAAAGCACATCAAAGAAAAGTCCATGGTGAAATTGTTACTGATACATCACTGGTTAGACACGATTGTCAAATTTGTCGTCAACATTTTACATCAGCTACTGGCCTGTTTCGGCATAAAACGCGTCATCACAATCCAACTGCAGAACCTATCGATGAAAAGGCCATTTGTGAAATATGCGGTAGATATCTATCGAGTAAACAAATATTAAGACTTCATATGCGTACGCATACTGGTTACAAGCCATACAAATGTGAAATCTGTAGTAAAGCATTCTCAGAACGGAGAGGTCTCACAGGTCATATGCGCAATCATAGTGATGAGAAGCAATATCAGTGCGAGTTGTGTGGCTACGAATTTAGATCACCACCAGGTTTAACAAGCCATCGACAGAGCAAACATCCGCAACATTATCCTAAAAAGGAGGTACCTGTGGATAAATATGATTGTAAACTTTGTAATAAACATTATAGGACACAAGCAGGATTATATTATCATAATATAAGTCATCATGGATTAAAGACAGCTGTCACTTCCACCGTTTGTGACATTTGTGGAAAAACTTTATCATCGAAAGACAAATTAAGACTACATCGTCGCATACACACTGGTGATAAACCATTTAAATGTGATATTTGcgaaaaatcattttcaagAAAAGACCAACTAGTAGAACATGAACGTGTTCATACTGGTGAAAAGCCGTTTGTTTGTCGATTTTGTGGCAAAGGTTTCACGCAACGCACCCCACTGCGTATACATGAACGCACGCATACTGGTGAACGACCTTACAAATGCAATATATGTGAAAAAGGatcATCAGTAAGCGAAAATGAAAGTTCTGATTATTTCGGCAATCGCCACCGAAAAACAACTAGACAAAAGCGAAAACTGAGGAACAATAATTCAGAACCTGCATTTAGAAAGCGTCATCCATCGCCAGCAATGGACCCAATAGAATGCGGTACATGTTCTGAATTGTTTAAAAACAATGTGACATTTATTCTACACTCAATTGCTCATTCAACGGATAAAAGATACGCATGTCATTTGTGTGATTATCACAATGCGTCAAAATATCACGCGGAAATGCATGTACGCACCCATGAGGGCGCGACGCGATTCAAATGTGAAACATGTCAAAAAGCATTTATTACACAGCTAGAAGCGGATgaacataaatattttcatactGGCGAGAAACCATTTCACTGTACAATCTGCGAAAAAAGTTTTGTTGCATCAAAACTTTTGAAAGCGCATCGGAATTACGTTCATCATGAACTTTTGACTGGAACTCAAATCGTTAAATACGATTGCACAATTTGTAGGATACATTATACGTCAGCTACGGCTTTGAAGCGgcataatttacataaacATAATCAAGGCGAGGATTTTGATCCTTCTGGAATTTGTGAAATATGCGGCAAACGAATAGCGAATAAAGCGAAATTACCACTTCATATGCGTACTCATACTGGTTACAAGCCATACAAATGTGAAATATGTGGTAAAAGAACCAatcaaaagaaatatttaaaaattcatatgcGTAATCATACGGGCGAGAAGCCATTTCAATGTGAGCTATGTGGTCAAAAATATATGTCCTCAGCAAGTTTGTCGGATCATCGGAAAAGGAAACATCCTGAAAATTATCCTAGGAAGGAGCTGCCATCTGATAGATTTGATTGTAAAATTTGTAACAAGCATTATACAACACGAGAAGGATTAAGGCATCATAATATAGGCCATCATGGATTGAAGGCAACGGTCTTTTCAACCGTTTGTGACATCTGTGGTAAAACGTTATCATCTACAGACAAATTAAGATTACATCGTCGCATCCACACCGGTGACAAGCCATTTAAATGTGACATTTGCGAAAAGTCGTTCACAAGAAAAGATCAACTAAAAGAACATGAACGTGTTCATACAGGCGACAAACCGCATATTTGTGAAATTTGCGGTAAAGGTTTCACGCAACGCACGCCACTGCGTCTACATGTACTCACGCATACTGATGAACGACCCCACACATGCAAAATATGTCAAAAAGGGTTCATTTCGAAAGCGTCAATGAACACACATATGAAAACTTGTTCAGTCAATGTGAAAGTTGGCAAATAG
Protein Sequence: MQYQPHPAPAMDPIECGTCSKLFKNNVEFILHSIEHSNNKKYSCHLCDYRNVSKYYTKMHARAHEGTTKFKCEICDKAFINGTHAAEHKYFHFGETPFQCKICDKSFMYSRRLKAHQRKVHGEIVTDTSLVRHDCQICRQHFTSATGLFRHKTRHHNPTAEPIDEKAICEICGRYLSSKQILRLHMRTHTGYKPYKCEICSKAFSERRGLTGHMRNHSDEKQYQCELCGYEFRSPPGLTSHRQSKHPQHYPKKEVPVDKYDCKLCNKHYRTQAGLYYHNISHHGLKTAVTSTVCDICGKTLSSKDKLRLHRRIHTGDKPFKCDICEKSFSRKDQLVEHERVHTGEKPFVCRFCGKGFTQRTPLRIHERTHTGERPYKCNICEKGSSVSENESSDYFGNRHRKTTRQKRKLRNNNSEPAFRKRHPSPAMDPIECGTCSELFKNNVTFILHSIAHSTDKRYACHLCDYHNASKYHAEMHVRTHEGATRFKCETCQKAFITQLEADEHKYFHTGEKPFHCTICEKSFVASKLLKAHRNYVHHELLTGTQIVKYDCTICRIHYTSATALKRHNLHKHNQGEDFDPSGICEICGKRIANKAKLPLHMRTHTGYKPYKCEICGKRTNQKKYLKIHMRNHTGEKPFQCELCGQKYMSSASLSDHRKRKHPENYPRKELPSDRFDCKICNKHYTTREGLRHHNIGHHGLKATVFSTVCDICGKTLSSTDKLRLHRRIHTGDKPFKCDICEKSFTRKDQLKEHERVHTGDKPHICEICGKGFTQRTPLRLHVLTHTDERPHTCKICQKGFISKASMNTHMKTCSVNVKVGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -