Pcyl014979.2
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456494.1:9066365-9069570[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00015 0.0074 16.6 0.9 2 23 26 48 25 48 0.96 2 28 2.6e-05 0.0013 19.0 0.4 1 23 53 76 53 76 0.94 3 28 7.5e-06 0.00036 20.8 1.2 1 23 134 157 134 157 0.97 4 28 0.00031 0.015 15.7 0.4 1 23 162 185 162 185 0.95 5 28 4.9e-05 0.0024 18.2 0.2 1 23 192 215 192 215 0.97 6 28 0.00048 0.023 15.1 0.3 3 23 223 244 222 244 0.97 7 28 0.00071 0.034 14.5 0.2 2 23 250 274 249 274 0.92 8 28 9.2e-05 0.0045 17.3 3.2 2 23 282 303 281 303 0.94 9 28 1.1e-05 0.00051 20.3 4.0 1 23 310 332 310 332 0.99 10 28 4.4e-05 0.0021 18.3 1.1 1 23 338 360 338 360 0.94 11 28 0.00075 0.036 14.5 3.7 2 23 414 435 413 436 0.92 12 28 4.3e-06 0.00021 21.5 1.1 1 23 441 464 441 464 0.97 13 28 0.00017 0.0082 16.5 0.4 1 23 471 494 471 494 0.98 14 28 0.0023 0.11 12.9 0.3 3 23 502 523 501 523 0.90 15 28 0.00077 0.037 14.4 0.5 2 23 529 553 528 553 0.91 16 28 0.0002 0.0096 16.3 2.6 2 23 560 581 559 581 0.94 17 28 0.072 3.5 8.2 0.6 1 23 588 610 588 610 0.96 18 28 0.0005 0.024 15.0 0.3 1 23 616 638 616 638 0.95 19 28 0.00019 0.0091 16.3 0.3 3 21 646 664 644 665 0.95 20 28 0.048 2.3 8.8 3.0 1 21 703 723 703 727 0.83 21 28 0.0034 0.17 12.4 0.7 1 23 732 755 732 755 0.97 22 28 0.00023 0.011 16.1 0.2 1 22 762 783 762 785 0.90 23 28 0.00074 0.036 14.5 0.3 3 23 793 814 791 814 0.93 24 28 0.0045 0.22 12.0 0.2 3 23 821 844 819 844 0.89 25 28 0.00097 0.047 14.1 1.5 2 23 851 872 850 872 0.95 26 28 0.00013 0.0065 16.8 0.3 1 23 879 901 879 901 0.98 27 28 0.00069 0.033 14.6 0.6 1 23 907 929 907 929 0.95 28 28 0.0013 0.061 13.8 2.8 3 23 937 958 935 958 0.97
Sequence Information
- Coding Sequence
- ATGGACAAGAAAGGGATGGAGCGAAATTCTGAAAAATCGTCCTTGAAACATGAAAATACCGTCAGTAAATCTATTAAATGTCCAGAATGTTCGAATACATATTCATCAAAGAAAACTCTAAATCAACATCTTAAGAGTATTCATGAAGGTTTGCGATTCTCTTGCCCTGAATGTTTAAAAGTATTTACACTCAAATCGAGTCTTAACCGACACGTTGAATATATTCATAATATTGAAAAAGCTAAAACTAGCCTGGATAATAAAAAGTTTCCTGGATATGCTGGTGGCGTACAGATTTTATCTGCGGATGTAGAAGCAGTGCATCAAACTGAAATGCAAAACAATACTGAAAAGCTGCCATTGATACGTGTTAAGTCAATGGAGAATGATAATGGATTATTCAATTGCCCGGACTGTTCAAAAACGTATTCATCGAGAAAAACTCTAAATCAGCATCTAAATAGTATTCATAAAGGTTTGAGATTTTCATGCGTTGAATGTTCTGAAATTTTTACACTGAAATCTAGTCTAAACCGCCATGTTCAAAATATCCATAAAAATGAACGTTCCGGTTATCAATGTGACATTTGTGGAAAAACTTATGCCGGCAAAGCTGGTCTTACATATCATAAAAATCGAGatcatttgaatatttttaatgtattttgcGAATTGTGCGGAAAAGGATTTCAAAGCGGAAGTTTTTTAACAAGACATATAAAAGTAGCTCACATTAAGGACAGGTTAACTTGTACGGAAACTGGCTGTGAGAAATCGTTTAAGGATTCAACAGGATTATCGTATCATATGAATGCAGCTCATGCCAAAAATAATCCAAATTTAATTTGTGACCACTGCGGGAAAATATTCACGCATCCAAGATTGTTTCAAAAACACTTGCTATTCCATAAAAATGGCCCCAAATTGTTTACTTGCAATATTTGTCATAAGGTGCTTAGAAGTTCGAAAAGCTTTCAGGAACATATGCGCACCCACACGGATGAAAGGCCGTTTTTATGCAATATTTGTGGCAAAGCATTTCGAAGAGCGCAGCATGTTCGAAACCATCGAGTAGTACATACAAAAGAGAAACCTTTCGCCTGTAGATTTTGTAAAAAGACTCCCCATTTTGCTACTGCACATGTAAAAGTGATGGACCAGaaagaaaatcaaacaaattttaaacatttgaAACAATCAAATACAGTAGTTAAACTAAAatcagaaaagaaaaagattcaTTGCCCAGAATGTTCAAAGACATACACATCAAGAAGTAGTTTTAGTAGACACTACGATGCTCATCATAAACTATTGAGATTTCCTTGTCCAGAGTGttcgaaaatatttaaaacgaAAGCAGCCCTGGACCATCACATTCGAAAGTTTCATGAAAACAGCATTCCAAATTATCAGTGTGACTTGTGTGGGAAAACTTATGCTGCAAAAGGTGGTTTAACGTATCATAAAAATACGACTCACTTTAATATTTCCAAAGTATTTTGCGAAATATGCGGCAAAGGATTTCAATATCAGAGTTTTCTGATACAGCATAAAGAAGACGTTCATATTAAAGGAACGGTAACGTGTAAGCAAGAGGGTTGTGGAAAAACGTTTATCAGTAAATCGGGATTACATTATCATACGTTAGCAGTTCACAAAGAAAAGAAACCATTGATTTGTGGGCAGTGCAATAAAACATTTACACATCCGACATCGTATCAAAGACATTTGTCATTTCACAAAAGAGAACGAAAGCTATTTACTTgtattatttgtaataaaagtaTGAGCACATCTCAATCTTATCAAGATCACGTAAGAGCCCACAGTGGGGAGAAACCATTTATATGCGAATTTTGTGGGAAAGGGTTTTCCGCCCAAAAATATCTTCGAATCCATAAAGTTGTACATACAAAAGAGAGGCCCTTTGGTTGTAAACTATGCGAAAAATCATTTTCGCAACGTGGTTCCTTAACTATTCATGTGAGAAACACTCCTTTTGTTGCCGTACATGTGAAAGTATTAGACCAGAACCACGAAAGAACAAAGTCAACTGAACAACTCCCGTCATGGCAACAATATTATAATGAAATAACCAAGAGATTCCATTGCCCCAAATGCCCAAAAACATATGCGTCGAGCGGCAGCGCTTTCAGTCATCATTACAAAACGATTCACAAGAATTTGAGATATTCTTGCCCAAAATGttcgaaattatttaaaacaaaaccaGCTGTGGATTATCACATTAAAAAAGATCATAAAAAAACAATCCCAGATTATCAATGTGATTTGTGTGGGAAAACTTATGCTCAAGAGGATggtttaaaatatcataaAGATGCTATTCACTTGAACATTTTTAAGTTGTTTTGCGAAGTATGCGGTAAAGGATTTCAACTTAAGAGTGGTTTGACTAGGCATAAAAACGCTGTGCATATCAAACGCACGATAATTTGTAAAGAAAAAAGCTGTGGAAAAACTGTTAATAGTAGATCAGCATTACGCTACCATATGTTAGCGGTCCATAAAGAAAAGAAGCAGTTAACTTGTGATTATTGCAATAAAACATTTACACATCCAATTTTATATGGACAGCATTTGTATTCCCATAAAGACGACCGCAAGAAATTCGTTTGCTTAATTTGTAAGAAAAGTTTGAGTTCGGCTAGCAGTTTTAAGGGTCATATGCTAGTGCATACTGGGGAGAAACCGCATATATGTGAATTTTGTGGAAAAGGATTTTCCGCCCAAAATTATCTGCGAGTCCATAGAGTCGTTCATACAAAAGAGAGGCCTTTTGGTTGTAAACTGTGCGAAAAGTCTTATTCGCAACGTGGTTCCTTAACTCTTCATGTGAAAAAGTGTCACGCAactacaaattaa
- Protein Sequence
- MDKKGMERNSEKSSLKHENTVSKSIKCPECSNTYSSKKTLNQHLKSIHEGLRFSCPECLKVFTLKSSLNRHVEYIHNIEKAKTSLDNKKFPGYAGGVQILSADVEAVHQTEMQNNTEKLPLIRVKSMENDNGLFNCPDCSKTYSSRKTLNQHLNSIHKGLRFSCVECSEIFTLKSSLNRHVQNIHKNERSGYQCDICGKTYAGKAGLTYHKNRDHLNIFNVFCELCGKGFQSGSFLTRHIKVAHIKDRLTCTETGCEKSFKDSTGLSYHMNAAHAKNNPNLICDHCGKIFTHPRLFQKHLLFHKNGPKLFTCNICHKVLRSSKSFQEHMRTHTDERPFLCNICGKAFRRAQHVRNHRVVHTKEKPFACRFCKKTPHFATAHVKVMDQKENQTNFKHLKQSNTVVKLKSEKKKIHCPECSKTYTSRSSFSRHYDAHHKLLRFPCPECSKIFKTKAALDHHIRKFHENSIPNYQCDLCGKTYAAKGGLTYHKNTTHFNISKVFCEICGKGFQYQSFLIQHKEDVHIKGTVTCKQEGCGKTFISKSGLHYHTLAVHKEKKPLICGQCNKTFTHPTSYQRHLSFHKRERKLFTCIICNKSMSTSQSYQDHVRAHSGEKPFICEFCGKGFSAQKYLRIHKVVHTKERPFGCKLCEKSFSQRGSLTIHVRNTPFVAVHVKVLDQNHERTKSTEQLPSWQQYYNEITKRFHCPKCPKTYASSGSAFSHHYKTIHKNLRYSCPKCSKLFKTKPAVDYHIKKDHKKTIPDYQCDLCGKTYAQEDGLKYHKDAIHLNIFKLFCEVCGKGFQLKSGLTRHKNAVHIKRTIICKEKSCGKTVNSRSALRYHMLAVHKEKKQLTCDYCNKTFTHPILYGQHLYSHKDDRKKFVCLICKKSLSSASSFKGHMLVHTGEKPHICEFCGKGFSAQNYLRVHRVVHTKERPFGCKLCEKSYSQRGSLTLHVKKCHATTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -