Pcyl014977.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Platypus cylindrus
Gene Symbol
-
Assembly
GCA_949748235.1
Location
OX456494.1:9050713-9054744[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 5.1 2.5e+02 2.4 0.1 10 23 2 16 1 16 0.90
2 34 0.0057 0.28 11.7 0.1 1 23 22 45 22 45 0.90
3 34 0.0016 0.077 13.4 0.3 3 23 53 74 52 74 0.97
4 34 0.0027 0.13 12.7 1.4 1 23 84 108 84 108 0.95
5 34 0.74 36 5.0 9.9 1 23 115 138 115 138 0.95
6 34 4.8e-06 0.00023 21.4 1.6 1 23 147 169 147 169 0.99
7 34 0.012 0.57 10.7 0.1 1 23 175 197 175 197 0.95
8 34 0.15 7.2 7.2 0.1 1 17 203 219 203 220 0.90
9 34 0.01 0.48 10.9 0.6 1 23 263 285 263 285 0.97
10 34 0.00011 0.0054 17.1 0.7 3 23 322 343 321 343 0.95
11 34 0.00031 0.015 15.7 2.0 1 23 349 372 349 372 0.97
12 34 0.0011 0.051 14.0 0.0 1 23 377 399 377 399 0.93
13 34 0.00011 0.0053 17.1 1.1 2 23 409 430 408 430 0.97
14 34 1.3e-06 6.5e-05 23.1 0.3 1 23 437 459 437 459 0.98
15 34 7.5e-06 0.00036 20.8 1.4 1 23 465 487 465 487 0.98
16 34 1.2e-05 0.0006 20.1 1.7 2 23 494 515 493 515 0.97
17 34 0.035 1.7 9.2 2.6 1 23 544 566 544 566 0.96
18 34 0.0016 0.079 13.4 0.3 1 23 571 594 571 594 0.97
19 34 0.0068 0.33 11.4 0.5 3 23 602 623 601 623 0.95
20 34 0.0011 0.051 14.0 0.7 1 19 629 647 629 652 0.94
21 34 0.0035 0.17 12.4 0.2 1 23 657 679 657 679 0.92
22 34 5.9e-05 0.0028 17.9 1.2 2 23 689 710 688 710 0.97
23 34 1.3e-06 6.5e-05 23.1 0.3 1 23 717 739 717 739 0.98
24 34 3.1e-06 0.00015 21.9 2.2 1 23 745 767 745 767 0.99
25 34 5e-05 0.0024 18.2 3.4 1 23 773 795 773 795 0.97
26 34 0.17 8.1 7.1 4.7 1 23 833 855 833 855 0.96
27 34 0.0048 0.23 11.9 0.6 1 23 860 883 860 883 0.97
28 34 0.0037 0.18 12.3 0.6 3 23 891 912 890 912 0.95
29 34 0.0064 0.31 11.5 0.8 2 19 919 936 918 941 0.91
30 34 0.00081 0.039 14.4 0.2 1 23 946 968 946 968 0.97
31 34 2.6e-05 0.0013 19.0 4.2 1 23 977 999 977 999 0.98
32 34 0.0018 0.088 13.3 2.1 1 23 1005 1027 1005 1027 0.98
33 34 6.9e-06 0.00033 20.9 2.0 1 23 1033 1055 1033 1055 0.99
34 34 7.3e-06 0.00035 20.8 2.8 1 23 1061 1083 1061 1083 0.98

Sequence Information

Coding Sequence
ATGTTCCGAGAAAATTGGTACTTGCGAAAgcatattttaattgttcatgAAAAAGGCTTGAAGTTTCCATGCGATATTTGTGGCAAAATCTATTCGACAAAGAACTCAGCGGGTATACATAAGAAGCTGGTGCACTTTAAGGATTTCGACGTGTTTTGCGAGCAGTGCGGTAAAGGATAtataaatatcaatcaatTGAATATTCATAAAAGGCGAGCGCATAGAAGCGATAATGCtccattaaatgtatttatttgcaCAATGCCAGGTTGTAATAAGACTTATAAATCGAAAATTGCTTTAAACTATCACCATTTAAGCCATCAAAATGAGAAACAGTCATTTCATTGTTTACATTGTTCGAAGACCTTTCAACATCCTATTTCACTAAAATATCATGTCAAACATAAACATAATGAGAATGTTAGCATTTTACTTTATAAATGTCACATTTGTGATAAACAGTTAACGTCTTCGGCCAGCCTAAAGGAACATCTGCGTGTCCACACTGGAGATAAGCCGTTTATATGTGAAATTTGTGCCAAAAGATTCGCTGCGGCTAAATATCTTAGAGTCCATAAGGTTGTTCATACAAAGGAAAAGCCGCATATTTGTGCATCGTGTGGGAAATCATATACGCAATATGGTTCGTTAAAAATTCTACACGTCAAGATTGAGGAACTAATAAAATCTGAACCGGAACGTAATAAAATTGAGTCACCTATGGCAGTATCAGACGAACAGAACTGGTTAGATAATCTGAAAGCACTGCAACCTCAACTAAATTTTCAATGTGATATGTGTGATAGAACACTACAAACATATTGGGGCTTATTAAGGCATAAAACCATTCACGAAAAGGAGCCGAAAAATGTCAAACCGCAAAAAAGAAGTAAACGAATGATGATCAATCGATGTCAAGTTTTCGATAAAGAGCAATCaaatgaaaaggaaaaagCAATTTGCGAGTATTGTGATAAATCTTATGCATCAAAACTTAGTCTGACGCatcatattaatttaatccaTAAACGGCAGTATCGTTTCAATTGTTCGAATTGCGAACAGGGATTTAAATCGGCACGTGATCTCACGCATCATGTCCGATCATCACATGAGGGTGTCACGTACCCATGTAAAATATGCGGGAAACCATTCACAACTGAAGTGGCAGCCGATCAGCATGTTCTTATTCACAGTCCAAATTACAAGCCGCCCCAAATCCAGTGCGATTCATGTGGAAAAATATTCAAGAGTCGTCAATCTTATGGCAAGCATATGAACCGGCATAGTAAAGACTTTTCGAATTTTATATGTGAATTGTGTGGCAAGGAAATTACATCGAAATCGTCACTAGAGAATCATATGCGAACACATTCGGACGAACGACCGTTTCAGTGTGAAGAATGTTcgaaaacatttaaaaaaccTATCCAGTTACGTCTGCACAAGCGAATTCATTCGAAAGATAAACGACAAGTCTGTAAAACTTGCCTGAAAACATTTACGCAAAGGAGTTCATTGATACTTCATATGCGATATCATACGGGTGAACGACCATTGTTGCCTATTAAAGTTGAAGATCTAATGAATCATATTGGCTATGACACCGAGGTGCCcggttgtttatttaaatgctaTTATTGTGATAAATGGTATCCCACAAAACAGACGTTGTGGCAACATAAAAACTTCCATAATCGGAAATCGTATCCATGCAATTATTGTGAGGCAACATTTCCGTATGTCCTTTTACTACAAAAGCATTTACGTCAGATGCATGCGAACAAGGTAAAAGTCGATTGTTCAATTTGTGGAGCGCATTTAAGGTCACAGGGTGGGCTGAAATTACATATGAAATTCGTACATGAGAAACAGTTCGATTTTAAATGTAACGAATGCGATAAGGGATTCCGAACAATTAATCAATTGCATGAACACGATCTGATTATTCACAAAAGtatgaaatttaaatgtaaaatatgccaGAAACCATTCACAACTGAAATGGCAGCCGATCAGCATGTTCTTATTCACAGTCCGAATTATAAGCCACCTCAAATCCAATGCGATTCATGtggaaaaattttcaagacTCGTCAATCTTATGGCAGGCATATGAATCGGCATAGTAAAGACTTTTCGAATTTTATATGCGAATTATGTGGCAAGGAAATCACATCGAAATCGTCACTAGAGAATCATATGAGAACACATTCGGACGAACGACCGTTTAAATGTGATGATTGTTCGAAAACGTTTAAGAATTCTATTCAGTTACGTTTGCATAAGCGGATTCATTCGAAAGATAAACCACACGTTTGTAAAACTTGTCTGAAAACATTTACGCAAAGGAATTCTTTGATAATTCATATGCGATATCATACTGGTGAACGACCATATCCATGTGTGCGATGCgataaaaaATTGTTGCCTAATAGGGTTGAAGATCTAATAAATCATATTGGTTATGACACTGAGGTGCCcggttgtttatttaaatgctgTTATTGTGATAAATGGTATCCCACCAAACAGACGTTGTGGCAACATAAAAACTTCCATAATCGGAAATCGTATCCCTGCAATTATTGTGAGGCAACATTTCAATATGTCGTCTTATATCAAAGGCATTTACGTCAGATGCATGCGGATAAGCTAAAAGTCGATTGTTCGATTTGTGGAGCGCATCTAAGTTCGCAAGCTACCCTGAAATTACATATGAAATTCGTACATGAGAAACAGTTCGATGTTAAATGTACCAAATGCGATAAACGATTCCGAACAATTACTCTGTTGCATGAACACGATATGATCATTCACAAAAGTATGAAATttgaatgtaaaatatgcCAGAAGCCATTCAAGTATCCAAGAGGTGCCGAGGCGCACGCGAACAAACACAATCCAACGATCAATGATCCCGAATATCATTGCAGTAAATGCAATAAATCGTATGCCACAAAACGATGGCTTAAAGTTCATTTGAAAACTCATATCAACTCATACGAGTACATTTGTGAACATTGCGGAGCAGCGTTGAAATCGAAATCGTCACTGCTGTGTCATATTCGTACACACAACAATGAACGGCTATTTAAATGTGATACATGCgaaaaaacatttaataatcCTAGTACTTTGCATGTACATGTTCTGACGCATACGAAAGTGAAGCCGCATGTATGTAAGATATGCTTAAAGACATTCTCGCAAAGAGGATCGTTGAAAATTCATTTAAGGAAACACACCGGTGAGAAACCGTATAGTTGTTTACAATGCGAGAAGCAATTTGTTTGTAAATCACATTTAAATCATCACAGttgtaaattataa
Protein Sequence
MFRENWYLRKHILIVHEKGLKFPCDICGKIYSTKNSAGIHKKLVHFKDFDVFCEQCGKGYININQLNIHKRRAHRSDNAPLNVFICTMPGCNKTYKSKIALNYHHLSHQNEKQSFHCLHCSKTFQHPISLKYHVKHKHNENVSILLYKCHICDKQLTSSASLKEHLRVHTGDKPFICEICAKRFAAAKYLRVHKVVHTKEKPHICASCGKSYTQYGSLKILHVKIEELIKSEPERNKIESPMAVSDEQNWLDNLKALQPQLNFQCDMCDRTLQTYWGLLRHKTIHEKEPKNVKPQKRSKRMMINRCQVFDKEQSNEKEKAICEYCDKSYASKLSLTHHINLIHKRQYRFNCSNCEQGFKSARDLTHHVRSSHEGVTYPCKICGKPFTTEVAADQHVLIHSPNYKPPQIQCDSCGKIFKSRQSYGKHMNRHSKDFSNFICELCGKEITSKSSLENHMRTHSDERPFQCEECSKTFKKPIQLRLHKRIHSKDKRQVCKTCLKTFTQRSSLILHMRYHTGERPLLPIKVEDLMNHIGYDTEVPGCLFKCYYCDKWYPTKQTLWQHKNFHNRKSYPCNYCEATFPYVLLLQKHLRQMHANKVKVDCSICGAHLRSQGGLKLHMKFVHEKQFDFKCNECDKGFRTINQLHEHDLIIHKSMKFKCKICQKPFTTEMAADQHVLIHSPNYKPPQIQCDSCGKIFKTRQSYGRHMNRHSKDFSNFICELCGKEITSKSSLENHMRTHSDERPFKCDDCSKTFKNSIQLRLHKRIHSKDKPHVCKTCLKTFTQRNSLIIHMRYHTGERPYPCVRCDKKLLPNRVEDLINHIGYDTEVPGCLFKCCYCDKWYPTKQTLWQHKNFHNRKSYPCNYCEATFQYVVLYQRHLRQMHADKLKVDCSICGAHLSSQATLKLHMKFVHEKQFDVKCTKCDKRFRTITLLHEHDMIIHKSMKFECKICQKPFKYPRGAEAHANKHNPTINDPEYHCSKCNKSYATKRWLKVHLKTHINSYEYICEHCGAALKSKSSLLCHIRTHNNERLFKCDTCEKTFNNPSTLHVHVLTHTKVKPHVCKICLKTFSQRGSLKIHLRKHTGEKPYSCLQCEKQFVCKSHLNHHSCKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-