Pcyl014496.3
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- SCRT1
- Assembly
- GCA_949748235.1
- Location
- OX456494.1:4614608-4617263[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 8.6e-05 0.078 13.0 1.8 10 38 295 320 290 325 0.89 2 5 0.48 4.3e+02 1.0 0.1 18 28 334 344 322 355 0.78 3 5 0.093 84 3.2 0.1 19 28 361 370 352 376 0.91 4 5 0.0001 0.094 12.7 0.4 6 41 377 408 374 410 0.86 5 5 0.01 9.3 6.3 1.5 15 43 413 438 409 439 0.89
Sequence Information
- Coding Sequence
- ATGCCACGCTGTCTAATGGCGAAAAAATGGAAATCGTATCCATGGACACATCAGGAAATTACCAAGGATACAGAAGAAGAGGAGGAAATTATAGATGTCGTGGGAGATTCGCAGGGTTCTTGTTGGGGACCTTCTAGTCCATCTGAAGGGGCTACAGCGCCTAGTCCACCGCCTGGTAGTCCGAATGGAACTAATATACTTTATAATGGTTATCTTGCAGAACTTCCAACCTCTACTTTCACTAGCTCTTGTATTCAAAAAACGGACCATTCAGTAATACAACAAACCGTCCCATCGCCGTCGTATACCACATTAAATACTGTAAAAACAGGAAATCAATCACATCAAACGTATGCACCATTGATAAGAAAGAAACCACTATCTGTAACACTGACAAGTTCAGGAGCACAACTAAGCTTACCACCAAAAAAGAAAGACATTTATCGGCCATATTGTCTGGAAGATAAACAATTGAATGAACAACATTTGCAATTTTTAAATGGACCACCAACAATACGTGTACCAGCTGAAGAAGATTTACATGCAGCTCATGCTATATTAGATCTAAGTGCATCTACGACAATATTTGTGCCGGCGCCTCCTTTATCGCCGCCACATCCAACTTCAGAACCTCAACGATCACAGTCACCAACTCCACCAACAACAGAAACAGGAGATCTACAAGTTTTGGAACCTAATTTATCTCCACCAGCATTGAAAGTGCCACTTAATGACATTACACATGAACAAGACAACATTAAACCAGCATCACCATTAACTGGAAAGAATGCAACAACGGTTGCGTATACATACGAGGCATTTTTCGTTAGCGATGGACGGTCAAAGAAGCGTTCTAATCCCGATGAAGTCCCACCTGTGAAAGTaacgaaaaataaaacgaaGTATACGTGCTCTGAATGTGGTAAACAATATGCTACATCTAGTAATTTATCCAGACATAAGCAAACCCATAGAAGTCTTGACAGTCAAGCGGCTAAAAGATGTCCCACATGTGGAAAGGCGTACGTTTCGATGCCAGCATTATCAATGCATATTTTAACGCATAAATTGGGCTATTCATGTAGTACGTGTGGAAAACAGTTTTCACGACCATGGTTACTTCAAGGTCATTTTAGATCGCATACAGGTGAGAAACCTTATGGATGTGCTCATTGTGGAAAAGCTTTTGCTGACAGATCGAATCTTCGTGCTCATATGCAAACGCATTCAGTTGATAAAAATTTCGAATGCCCGAAATGTCATAAGACTTTTGCATTAAaatcttatttaaataaacatttggAATCCGCTTGCCTCAAAGAAGAAAACACAGTTAAgcaagataataaaaaatctttCCTTTCTTCATCAGATTCTTCTATTATCTAA
- Protein Sequence
- MPRCLMAKKWKSYPWTHQEITKDTEEEEEIIDVVGDSQGSCWGPSSPSEGATAPSPPPGSPNGTNILYNGYLAELPTSTFTSSCIQKTDHSVIQQTVPSPSYTTLNTVKTGNQSHQTYAPLIRKKPLSVTLTSSGAQLSLPPKKKDIYRPYCLEDKQLNEQHLQFLNGPPTIRVPAEEDLHAAHAILDLSASTTIFVPAPPLSPPHPTSEPQRSQSPTPPTTETGDLQVLEPNLSPPALKVPLNDITHEQDNIKPASPLTGKNATTVAYTYEAFFVSDGRSKKRSNPDEVPPVKVTKNKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQAAKRCPTCGKAYVSMPALSMHILTHKLGYSCSTCGKQFSRPWLLQGHFRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECPKCHKTFALKSYLNKHLESACLKEENTVKQDNKKSFLSSSDSSII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -