Pcyl011375.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456491.1:12116087-12117881[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.6 7.8e+03 -3.0 0.3 14 24 7 17 4 24 0.64 2 10 0.048 43 4.2 0.1 12 41 149 175 142 177 0.85 3 10 1.3e-05 0.012 15.6 4.5 6 44 172 205 171 205 0.89 4 10 0.00092 0.83 9.7 0.3 15 41 210 233 206 235 0.88 5 10 0.006 5.4 7.1 0.2 17 30 240 257 233 269 0.72 6 10 0.00069 0.62 10.1 1.0 15 38 266 286 255 291 0.73 7 10 0.00081 0.74 9.8 1.9 18 44 297 321 288 321 0.89 8 10 0.011 9.6 6.3 0.1 19 41 328 347 326 349 0.87 9 10 0.51 4.6e+02 0.9 1.2 15 36 352 370 344 377 0.75 10 10 0.78 7e+02 0.3 3.6 17 38 382 400 371 404 0.74
Sequence Information
- Coding Sequence
- ATGTCATTTACCtcggataataataaaaaattttgtagAACTTGCTTAGTTCAAACAACAGAAACAAAACATTTATTTGACCTGGATGCTGCTAATTTATCACTTTCGGATATGTTACATGTTTGTACATCGTTAAAAATAATTGAAAATGATGATTTTCCTAAACAAGTTTGCCTGCCGTGTGCCAAttcgataaaaaaattatttttctttcgaGAAGAATGTATTAAGTCTtattatacattaaaaaaCATAATATCTAGTGCAAATGATGTGCAATCAACATTAGATAAACGTttggaaattaatttgaaaaatgataataatgatggaAATAAAAATGGCGAAAGTAGCGGTAGCTGCTCACTTCTTCAAAGTACAGTCGATTTCAATGAAGAAGAGAAAAAATGcaatgaatataaaataattaaaaggcCACTagcaaaaaatagaaacaaattcTTATGTGAATTATGTGCAGCTACTTTTCCGACTGGCAACGGTTTAAGAGAACATATTAGAAAACATGAAATGACACGACGTACATGTTCAATATGTAATCAAAAGTTTTCCAGATCAAGTACATTATCACGGCACATAGCTAGTGTGCATAATGAAGCAAATGCTAAAAAACATGTATGCAATGAATGCGGAAAAGGTTTTGCAAGAAGTGATGATTTAAAACGACATATTCGAACTCATACAGGAGAGAAACCGTTTCAATGCAATTTATGTGGGAAAGCATTCACTCAGTCTTTTAGATTAGTGGAGCATACACGAGCACATGAGAATATCAAAAACTTCCTATGTTTAATTTGTGGAAAAACTTATTCGCGATATACAAGTTTAATGGCACATAATCAAACTCATACAGGTGCAAAAACGCGAGAATGTACTGAGTGCGGAAAACGATTATCTGGTGGCAATGGCTCTTTAAAAATGCACATGAAAACTCAGCACAGTCAACTTAGAGATTTTCCATGCAATTTTTGTGATAAAGCATTTACGGCAAAAAGTAGtttaattattcatataaGAACACATACAGGAGAAAAACCGTATACATGCGATACATGTGGAAAATCATTCGCAGATACATCCAGATTAAATGTACATTATCGAATCCATAGTGGCGAAAGGCCGCATGTTTGTACAATTTGTGGTAAAGGATGTGTCAGTTCATCACAATTGAAAAAACATACGCGAGTCCACACTGGAGAATGA
- Protein Sequence
- MSFTSDNNKKFCRTCLVQTTETKHLFDLDAANLSLSDMLHVCTSLKIIENDDFPKQVCLPCANSIKKLFFFREECIKSYYTLKNIISSANDVQSTLDKRLEINLKNDNNDGNKNGESSGSCSLLQSTVDFNEEEKKCNEYKIIKRPLAKNRNKFLCELCAATFPTGNGLREHIRKHEMTRRTCSICNQKFSRSSTLSRHIASVHNEANAKKHVCNECGKGFARSDDLKRHIRTHTGEKPFQCNLCGKAFTQSFRLVEHTRAHENIKNFLCLICGKTYSRYTSLMAHNQTHTGAKTRECTECGKRLSGGNGSLKMHMKTQHSQLRDFPCNFCDKAFTAKSSLIIHIRTHTGEKPYTCDTCGKSFADTSRLNVHYRIHSGERPHVCTICGKGCVSSSQLKKHTRVHTGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216156;
- 90% Identity
- iTF_01216156;
- 80% Identity
- iTF_01216156;