Pcyl014979.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456494.1:9068383-9069570[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00051 0.46 10.5 2.1 14 43 22 48 15 49 0.89 2 10 0.0029 2.6 8.1 0.4 15 44 132 158 124 158 0.85 3 10 2.4 2.2e+03 -1.3 0.1 19 43 164 185 162 188 0.75 4 10 0.0023 2 8.4 1.9 14 38 189 210 175 217 0.72 5 10 0.0077 7 6.7 0.1 17 43 221 244 216 245 0.90 6 10 0.019 17 5.5 0.0 22 43 256 274 254 275 0.86 7 10 0.022 20 5.3 0.1 17 27 281 291 276 294 0.85 8 10 0.00066 0.6 10.1 2.9 10 41 303 331 295 333 0.77 9 10 0.028 26 4.9 1.1 17 29 338 350 327 357 0.74 10 10 0.00064 0.58 10.2 0.6 11 31 357 380 347 388 0.75
Sequence Information
- Coding Sequence
- ATGGACAAGAAAGGGATGGAGCGAAATTCTGAAAAATCGTCCTTGAAACATGAAAATACCGTCAGTAAATCTATTAAATGTCCAGAATGTTCGAATACATATTCATCAAAGAAAACTCTAAATCAACATCTTAAGAGTATTCATGAAGGTTTGCGATTCTCTTGCCCTGAATGTTTAAAAGTATTTACACTCAAATCGAGTCTTAACCGACACGTTGAATATATTCATAATATTGAAAAAGCTAAAACTAGCCTGGATAATAAAAAGTTTCCTGGATATGCTGGTGGCGTACAGATTTTATCTGCGGATGTAGAAGCAGTGCATCAAACTGAAATGCAAAACAATACTGAAAAGCTGCCATTGATACGTGTTAAGTCAATGGAGAATGATAATGGATTATTCAATTGCCCGGACTGTTCAAAAACGTATTCATCGAGAAAAACTCTAAATCAGCATCTAAATAGTATTCATAAAGGTTTGAGATTTTCATGCGTTGAATGTTCTGAAATTTTTACACTGAAATCTAGTCTAAACCGCCATGTTCAAAATATCCATAAAAATGAACGTTCCGGTTATCAATGTGACATTTGTGGAAAAACTTATGCCGGCAAAGCTGGTCTTACATATCATAAAAATCGAGatcatttgaatatttttaatgtattttgcGAATTGTGCGGAAAAGGATTTCAAAGCGGAAGTTTTTTAACAAGACATATAAAAGTAGCTCACATTAAGGACAGGTTAACTTGTACGGAAACTGGCTGTGAGAAATCGTTTAAGGATTCAACAGGATTATCGTATCATATGAATGCAGCTCATGCCAAAAATAATCCAAATTTAATTTGTGACCACTGCGGGAAAATATTCACGCATCCAAGATTGTTTCAAAAACACTTGCTATTCCATAAAAATGGCCCCAAATTGTTTACTTGCAATATTTGTCATAAGGTGCTTAGAAGTTCGAAAAGCTTTCAGGAACATATGCGCACCCACACGGATGAAAGGCCGTTTTTATGCAATATTTGTGGCAAAGCATTTCGAAGAGCGCAGCATGTTCGAAACCATCGAGTAGTACATACAAAAGAGAAACCTTTCGCCTGTAGATTTTGTAAAAAGACGTTTTCTCAGCGTGGTTCTTTAACTCTCCATATCAAAAAATGTCAAGCAAATACAAATCTATTATGA
- Protein Sequence
- MDKKGMERNSEKSSLKHENTVSKSIKCPECSNTYSSKKTLNQHLKSIHEGLRFSCPECLKVFTLKSSLNRHVEYIHNIEKAKTSLDNKKFPGYAGGVQILSADVEAVHQTEMQNNTEKLPLIRVKSMENDNGLFNCPDCSKTYSSRKTLNQHLNSIHKGLRFSCVECSEIFTLKSSLNRHVQNIHKNERSGYQCDICGKTYAGKAGLTYHKNRDHLNIFNVFCELCGKGFQSGSFLTRHIKVAHIKDRLTCTETGCEKSFKDSTGLSYHMNAAHAKNNPNLICDHCGKIFTHPRLFQKHLLFHKNGPKLFTCNICHKVLRSSKSFQEHMRTHTDERPFLCNICGKAFRRAQHVRNHRVVHTKEKPFACRFCKKTFSQRGSLTLHIKKCQANTNLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -