Pcyl008921.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- bab2
- Assembly
- GCA_949748235.1
- Location
- OX456490.1:4268984-4271621[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-12 2e-09 36.9 0.1 1 45 399 443 399 443 0.96 2 2 8.8 1.1e+04 -3.8 1.2 6 15 506 516 503 519 0.81
Sequence Information
- Coding Sequence
- atgGAGCATACTCAACAGCAGTATTGTTTACGATGGAATAACCATCATTCGAACCTGCTGACTGTATTTCAGGACCTTCTACAAAGTGAAGTATTTGCTGATGTTACACTAGTTTGCGATGGTGGCAATCCAATTAAATGTCATCGAATGGTATTGGCGGCATGTTCACCTTATTTTCAAAATCTTTTCAAAGATTTACCATGCACCAAACCAGTGGTCGTACTAAAAGATATCAAATACATAGAAATCAAAGCGATACTACAATACATGTATCGTGGTGAAGTGAATGTGGCCCAAGATCATTTAGCTGCCATGTTAAAAGTGGCTGAAGCATTGAGAGTAAAAGGATTAGTAGAGGAAGAAAAATCGTGTAAAAGTTCATCAGAAGAACCACATTCAATGGACCATCATCCTCGATCACCATCGCCAATTTCCACATCCAATGATCAAACGATTCATTCGAATACTGTCCATAACACCTGCATCAGTAACTCACcaacaccaccaccgccaccacttCATCCATCGAGTCTAATGTATAGTCCCGCCTATGAACGTAAAGCGTCggaatatacaaatataaatataccACTATGGGCAACCTTACCTGGGttaccaccactaccaccacatACTCCATCACTTCCAACAAATGCAAGTAACCACCGTCAGATGGCCGCCATGTTAAGCGGAGCGTACAATGTTGCCGGTACAGATTTATCGCCattgaaaaagaagaaattaagtAGTTTACAGTTTCAAGGAGAGCCACCAATGGACACGCCAATATTGCGTACCGTCTTAGGCCAAGGCCAAGCTGATAACTCACAATCTGCTGGATTGGCGAATTGTCATTCCGATAATGGAGAAAGTATGATTGATGGCAATCACAGTGATCGTAGTAGTGCTACTAGTAGTGGTGCTGATGATCGAAAAACAAACCGACTCCGAAACGAACCATTAGAAGACGCCCAATCACCTTACACCGATTTCATGGATCAATCCGTAAGCAACGATGAAGACGATAAATCGAAACTAGCAATTCCATCCTCGTCCCCACAATCACTAAATCGTGATGATCGGGCTAATCCAACATCGACTTCTATCGCAAGCTATGTAAcaccacaacaacaacaacaacaacaacaacagcaacccCAACAAAAACCGGAATGGAAACGTTATAAACTCTACACAAGAGATGAAATAATGGCAGCAATTGATGCAGTCCGTTCAGGCATGTCAGCATTATCAGCAGCTAGAAAATTCCATGTACCATCACGAACATTATATGATAAAGTCAAGAAATTAGGGATTGCAACAAGTAGACCATTTAAACGTGGCACAAATGGCAGTTCGGCATGTTTTCCATTTAGAAGACGAGCACAGTATCCTCGAATGCCAGataatattaacaataatagtGCCTTATTGGAGGCGAGTACATTAATTAAACATGCATTTGATAATCATAGTTCCGGTGAAGAAAAGGAAGCTTTAGCAGCAATGGCAGCAGCTGCAGCTGCACATGCAGTTGTCGCATCCGGCCATTCAGCAATGCAAATGAGTAATATTGGTCGGCCTAGGACGCCATCTCCGATTCATAGAACAACAACAACAATGTTAAAATATATGGATCACAACCGAATAACACCATCACCACCATTACCAGCACATGATATCCATTTCAACCATACAAATGGTAGTTCAGAAATAGATCAAGAAAATGATATGGACCCGGTGGATTGTATTCAAAATCAAGTTGAAGATTTATCAATTCGCCGGAAAAATCGTGAAGTTGATGCTGATACTACAGCAACTTCTAGTCCACCAGCTCCAGTAGTAGAATCTGGTGTTATTATGCCACCAATGAATCATATTTcaactataataaaaaaagaacatttcGATTGA
- Protein Sequence
- MEHTQQQYCLRWNNHHSNLLTVFQDLLQSEVFADVTLVCDGGNPIKCHRMVLAACSPYFQNLFKDLPCTKPVVVLKDIKYIEIKAILQYMYRGEVNVAQDHLAAMLKVAEALRVKGLVEEEKSCKSSSEEPHSMDHHPRSPSPISTSNDQTIHSNTVHNTCISNSPTPPPPPLHPSSLMYSPAYERKASEYTNINIPLWATLPGLPPLPPHTPSLPTNASNHRQMAAMLSGAYNVAGTDLSPLKKKKLSSLQFQGEPPMDTPILRTVLGQGQADNSQSAGLANCHSDNGESMIDGNHSDRSSATSSGADDRKTNRLRNEPLEDAQSPYTDFMDQSVSNDEDDKSKLAIPSSSPQSLNRDDRANPTSTSIASYVTPQQQQQQQQQQPQQKPEWKRYKLYTRDEIMAAIDAVRSGMSALSAARKFHVPSRTLYDKVKKLGIATSRPFKRGTNGSSACFPFRRRAQYPRMPDNINNNSALLEASTLIKHAFDNHSSGEEKEALAAMAAAAAAHAVVASGHSAMQMSNIGRPRTPSPIHRTTTTMLKYMDHNRITPSPPLPAHDIHFNHTNGSSEIDQENDMDPVDCIQNQVEDLSIRRKNREVDADTTATSSPPAPVVESGVIMPPMNHISTIIKKEHFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216072;
- 90% Identity
- iTF_01216072;
- 80% Identity
- iTF_01216072;