Pcyl005078.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- bab1
- Assembly
- GCA_949748235.1
- Location
- OX456488.1:43744086-43759315[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 1.7e-07 30.7 0.0 1 38 398 436 398 441 0.90 2 4 6e-13 7.4e-10 38.3 0.1 1 39 452 490 452 493 0.95 3 4 8.1e-19 1e-15 57.1 0.0 1 45 507 552 507 552 0.98 4 4 1.2e-16 1.4e-13 50.2 0.0 1 39 559 598 559 601 0.94
Sequence Information
- Coding Sequence
- ATGGTGGATGATGACCAGCACTACTGCCTAAGATGGAACAATTACCAAAGTAATATGACATCCATTTTCCAgcaattattggaaaatgaagcATTTGTGGATGTAACTTTGGCATGTAAAAGTATATCATTAAAAGCCCATAAGGTAGTTCTATCAGCTTGTTCATCGTATTTTAGAACATTATTCATGGAAAATCCTTGTAAACATCCAACAATTATAATGCCATCCGATGTCAGTTTTGCAGATCttcgttttattattgattttgtttataaaGGTGAAATTGATGTGTCTCAAACTGAGTTGCAGTCTTTGCTACGCACTGCGgatcaattaaaaatcaaaggCCTTTGCGATTCTCCCGACGATAAATCATCTACCTCAAATCAATTGCCTCAATTTTACAGAAGAATCGATGCatcaataaagaaaacaaGTAAACACAGAGAACTTAATTTAGAGGACAATAATCGTCGGCAGTACAAATACAGATGCTTAGAAAATCGATCCCCATTGACAACACTTACAGCTGAAGATACAAATCAACATTCGAAAGTAACCATTAATCACGAAAAGCAAGGACAGCTAATAAgagagttagaaaatagtaaTTCCGAAGAAAATACTAATGTTGACAATGATATGCCAATAGCTCTTAATGAACGGAATAAAGGCATCAAGCATTTGCAGCGCGGAGTTCAGTCTGAGCAAATTTCTCCGCTAAACATGAGCAGTCATGGTATTTTAACAGGTCAGCCGATTTTTTCAACTTTTGATACAGACGATTTTCCCCCTGAACCACCAGCACCAACTGCTGTTCCTGTAGGTCACGTGGACATGTCAGATCATCCTGCATCTATGTTAACAAGTTCTTCGATACATCGAACAGATTTGTCGGATTCTACTTCGAAGTACTCGAtagagattaaaaaagaagctGAAGTTAAATTTGAAACATTAAGGACATTCGAACAGGATAGTTTTTTAGATATGGATTCACGTATGAGCGGTGGTTCACATGAAGATGCAGCAGATAGAGGACGATCGAGTATTATGCGTCGAAATTTCGCAATGTTGCATCGTAGAGaattGAATAGTACTGATAACGGTGACATAAAGATTAATGGTCACTCTGATAGTATTTACCAAAGAGGGCAGCAAAATGCAACAGCTAATAGTCCTAAAACATGGACACAAGAAGATATGGATATGGCATTAGATGCTTTAAAAAACCATAATATGAGCTTGACAAAGGCATCTGCAACATATGGAATTCCCTCCACAACTCTTTGGCAAAGAGCACATAGAATGGGAATCGATACGCCCAAAAAGGAAGGCCCGTCGAAATCTTGGACCGAGGAGAATTTGAACAATGCATTAGATGCTTTGAGAACCGGAACAATTTCAGCTAATAAAGCTAGTAAAGCTTATGGTATACCAAGTAGTACACTTTACAAAATAGCACGGCGAGAAGGAATAAGACTGGCTGCCCCATTTAATGCAGCTCCAACCACTTGGACCCCAGAAGATTTAGAAAAGGCTTTGGAATCAATTCGAACAGGTCAAACTTCAGTCCAAAAAGCATCTACTGAATTCGGAATACCAACGGGGACATTATATGGAAGATGTAAACGAGAAGGTATTGAATTGTCACGATCAAATCCAACACCATGGTCAGAAGATGCGATGGGGGAAGCACTGGAGGCTGTTCGTCTAGGTCATATGTCTATTAATCAAGCAgcaattcattataatttaccATATTCATCCTTGTATGGGCGCTTTAAGAGAGGCATAAAATATGATTCCGACAGCATAGAGGTTCATCAGGAAAATGGCCGACATTCTATGGACATTCACGGATTTGGAACTGTGGAATATGGAAATAGTCAACATCACATTCAATACCAAAACCCACCACCAAATAGCTGA
- Protein Sequence
- MVDDDQHYCLRWNNYQSNMTSIFQQLLENEAFVDVTLACKSISLKAHKVVLSACSSYFRTLFMENPCKHPTIIMPSDVSFADLRFIIDFVYKGEIDVSQTELQSLLRTADQLKIKGLCDSPDDKSSTSNQLPQFYRRIDASIKKTSKHRELNLEDNNRRQYKYRCLENRSPLTTLTAEDTNQHSKVTINHEKQGQLIRELENSNSEENTNVDNDMPIALNERNKGIKHLQRGVQSEQISPLNMSSHGILTGQPIFSTFDTDDFPPEPPAPTAVPVGHVDMSDHPASMLTSSSIHRTDLSDSTSKYSIEIKKEAEVKFETLRTFEQDSFLDMDSRMSGGSHEDAADRGRSSIMRRNFAMLHRRELNSTDNGDIKINGHSDSIYQRGQQNATANSPKTWTQEDMDMALDALKNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPSKSWTEENLNNALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDSIEVHQENGRHSMDIHGFGTVEYGNSQHHIQYQNPPPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216063;
- 90% Identity
- iTF_01216063;
- 80% Identity
- iTF_01216063;