Basic Information

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.053 1e+02 3.3 0.0 18 37 31 50 2 55 0.58

2 7 0.13 2.5e+02 2.1 0.0 12 37 57 82 52 85 0.85

3 7 0.64 1.2e+03 -0.1 0.0 17 37 83 103 73 109 0.75

4 7 0.49 9.3e+02 0.3 0.0 13 36 121 144 95 150 0.67

5 7 0.046 89 3.5 0.0 9 39 149 179 142 183 0.85

6 7 0.15 2.8e+02 1.9 0.0 12 36 216 240 183 243 0.84

7 7 0.018 35 4.8 0.0 12 38 269 295 263 299 0.86

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.053	1e+02	3.3	18	37	31	50	2	55	0.58
2	7	0.13	2.5e+02	2.1	12	37	57	82	52	85	0.85
3	7	0.64	1.2e+03	-0.1	17	37	83	103	73	109	0.75
4	7	0.49	9.3e+02	0.3	13	36	121	144	95	150	0.67
5	7	0.046	89	3.5	9	39	149	179	142	183	0.85
6	7	0.15	2.8e+02	1.9	12	36	216	240	183	243	0.84
7	7	0.018	35	4.8	12	38	269	295	263	299	0.86

Coding Sequence: ATGTCGATATACATCGACAATCGAAACTCAAAATATCGATCTACATCGACAATCGATACTCAAAATGTCGATATACATCGACTATCGACATCAAAATGTCGATCTACATCGACTATCGATACTCAAAATGTCGATCTACATCGACTATCGAAACTCAAAATATCGATCTACATCGACAATCGAAACTCAAAATATCGATCTACATCGACAATCGATACTCAAAATGTCGATATACATCGACTATCGACATCAAAATATCGATCTACATCGACAATCGATACTCAAAATGTCGATATACATCGACTATCGACATCAAAATGTCGATCTACATCGACTATCGAAACTCAAAATATCGATCTACATCGACAATCGAAACTCAAGATGTCGATATACATCGACTATCGACATCAAAATGTCGATCTACATCGACTATCGATACTGAACATATCGATGTATATCGACAATCGAAACTCAAAATGTCGATCTACATCGACTATCGATACTGAACATATCGATGTATATCGACTATCGAAACTCAAAATGTCGATATACATCGACTATCGAAACTCAAAATATCGATCTACATCGACAATCGAAACTCAAGATGTCGATATACATCGACAATCGAAACTCAAAATTTCGATATACATCGACAATCGAAACTCAAAATGTCGATATACATCGACTATCGAAACCCAAAATATCGATCTACATCGACTATCGATACTGAACATATCGATGTATATCGACAATCGAAACTCAAAATGTCGATATACATCGACATCGAAACTCAAAATGTCGATATACATCGACAATCGAAACTCAAAATATCGATCTACATCGACTATCGAAACTCAAAATGTCGATCTACATCGACTATCGAAACTCAAAATATCGATCTACATCGACTATCGAAACTCAAAATGTCGATATACATCGACTATCAAAACTGAGAATGTCGATATACATTGA
Protein Sequence: MSIYIDNRNSKYRSTSTIDTQNVDIHRLSTSKCRSTSTIDTQNVDLHRLSKLKISIYIDNRNSKYRSTSTIDTQNVDIHRLSTSKYRSTSTIDTQNVDIHRLSTSKCRSTSTIETQNIDLHRQSKLKMSIYIDYRHQNVDLHRLSILNISMYIDNRNSKCRSTSTIDTEHIDVYRLSKLKMSIYIDYRNSKYRSTSTIETQDVDIHRQSKLKISIYIDNRNSKCRYTSTIETQNIDLHRLSILNISMYIDNRNSKCRYTSTSKLKMSIYIDNRNSKYRSTSTIETQNVDLHRLSKLKISIYIDYRNSKCRYTSTIKTENVDIH

Sequence clustering based on sequence similarity using MMseqs2