Prob046619.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Platygaster robiniae
Gene Symbol
gl
Assembly
GCA_028476575.1
Location
CM052020.1:37328193-37338560[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3.5e-07 0.00012 24.1 0.7 3 23 118 138 117 138 0.99
2 5 9.8e-07 0.00035 22.7 0.8 1 23 144 166 144 166 0.99
3 5 3.2e-08 1.1e-05 27.3 1.4 1 23 172 194 172 194 0.99
4 5 5.1 1.8e+03 1.5 0.2 13 23 201 211 199 211 0.90
5 5 0.98 3.4e+02 3.8 0.1 1 13 217 229 217 231 0.91

Sequence Information

Coding Sequence
atgcgatttGTAGGAGATCCAAGCATGAGAAAAACGGGTATTCCTCCCCCGATAAAGCAAAAATTTTCTTCTCTTTTTGGAAAATCAAAAAGATACGAGCAGAGTTATTCATCGGCGTGGGGCGTCGAGCCATTGCTGAGTCCCGCCCCGCAATACAACCCCGTGGAAACGCAGCAGCAGCAGCAGGGTAGATTAAATCAGGCTCCGGCCAATAGTCTGATATCGGCGGTTCACCCTCATTCGCACCCTCACTCGCGGATGCTGCAGTCCTCTGGATCCGAGCACTCGTTATGCATCAGTACCGGAGGACCTCCCGGGCTCAATCCCGACGAcagcggccgacccaacctctgccgaatttgcggcaaaacctacgcacgaccgtccactctgaaaacgcatctacgcacgcactcgggggagaagccttttagGTGTCACGCGTGTTCCAAAGCCTTTTCTCAAGCCGCGAATTTGACTGCCCACGCGAGAACACATTCTGGTGAAAAACCTTTCCGATGCCCTGTATGTGACAGGCGATTTTCACAAAGCAGTTCTGTCACGACACACATGAGGACACATTCAGGGGAACGCCCTTATCGTTCTACTTTGACGAAACACAACCGAATTCATTCAGGAGAAAAGCCCTACCAATGCAAGCTGTGCCTGTTGAGATTTAGTCAGTCATTAACAACAAGTCAGTTCATGACAAGAAAATTTTCACAAGCAAGAGTATTGTCTGTGACCGCAGACCTGATCGACTTGCTTAAGATAGTGAAAAACTACAAAAACGTAATCACGTCACCACTTTTCATAATTATTCTCACCAACGAGGCTACATACGAACAGCTCAAAAGCGCTTTTCGTACAATCAACATGTCATATGCAAAGTGGTTTCTCATATTCACGAATTCCTCCAACGAGTTTTGTTTGGAACCTAATACCAAAAGGAACCCTTTCAACGTGGCATTTGGTACGCAAATTATTGTCAAATGCAGTGACACGTATAAACTCAATCATTGGGAAAGTCAAGAAGATCATATAGATGTTCACGATTTCTTGACTTGGAGCCCCGACAATGGAATCGTTTCGTTGACTGCAGAGAAAGGCTACCATTTGCGTAATCTTCACAGAAAAAAAATCAATGTAGGGTATGTGGAAACGGACCACGAAAAGGGACATGGATTGTTCGTCTTTTATGAAGAACTCGAAAAAAGATTGAACTTCAGTGCCAATTTGGTGCACGACGAGAACTACGCTGTTAGTGACAACTCTTCAGCTGGAATACTAGGTAGAGTGTCAACTGGGGACTTGGACATGAGCAAGCACATGTTTGTAATCTCAAGGGATAGATGGGATTTCGTGGATTTTTCTATTCAGACAGCGAGTACGATGGATGTATTGCTCTTTAGGAAACCGGACGATTATGCATTTACATGGACTGCTCATTTTGAGATGTTCCAGCTTCATCTTTGGGGAGCAATCGCTGTAACATTCATCAGCCTTGTCCTTTCTGTTACTTTGCATGAAACAATTCGCAAAGGCTTGACATCATTTTTCAGGAATTTTTCTGACTCACTGCTTCATGTGTGGAGTATAAATTGTCAACAGGGTTTGTCAGGATCTCAATCGTCAGCATCGTTAAAAACTATTTATGTAGTGGCTTTTTTTACGTCGCTAATTTTTTACACTGCTTATTCAATTTTTCTTACGAGCTACCTATCACTCTCAAAGCCGAACCTACCATTTTCCGATGTTGAAGGTTACATTGAAGACGGTTCATACGAACTCATCGCCAGAAATGGCCACCCTGTTGTTAAATTTATTTTAAACGATAATGACACCTTTTTTGCGCGTATGAAAAAATTGTTGAAAAAAGATTTACCCGTTTCAGATCTGGAAGGATTTTTGCAGATGTGTGGAGAGAAATCTGCGTACTACATTTCTTACGTGCTAGTCCTTATACGGTCTGAGGAAGTTCCCTGTCGTACGACTCATTTTGAAGTGGGACATGAATACGTGTTATATGCATTTATATTCAACAAAAATATTACGTTCAAGGAATTATTTAACTATCAGATCGAGCGATTTCGTGAATTTGGACTACTGCAATACTATGTGATGAAGCCTCTTGAAAGTGAATCAATTATTCCGGAGGAAGACAATCTTTATTTTGCCACAATCTCTTTGAAACAAGTCATACCAATCTTAACAATTTTTTTCAGCGGTGCTTTTTTTTCAGTTATTATTTTATTAATTGAGAAAGTATATCTTATAAGTTTAGAAAAACGAGTGATATCTGTGTGA
Protein Sequence
MRFVGDPSMRKTGIPPPIKQKFSSLFGKSKRYEQSYSSAWGVEPLLSPAPQYNPVETQQQQQGRLNQAPANSLISAVHPHSHPHSRMLQSSGSEHSLCISTGGPPGLNPDDSGRPNLCRICGKTYARPSTLKTHLRTHSGEKPFRCHACSKAFSQAANLTAHARTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRSTLTKHNRIHSGEKPYQCKLCLLRFSQSLTTSQFMTRKFSQARVLSVTADLIDLLKIVKNYKNVITSPLFIIILTNEATYEQLKSAFRTINMSYAKWFLIFTNSSNEFCLEPNTKRNPFNVAFGTQIIVKCSDTYKLNHWESQEDHIDVHDFLTWSPDNGIVSLTAEKGYHLRNLHRKKINVGYVETDHEKGHGLFVFYEELEKRLNFSANLVHDENYAVSDNSSAGILGRVSTGDLDMSKHMFVISRDRWDFVDFSIQTASTMDVLLFRKPDDYAFTWTAHFEMFQLHLWGAIAVTFISLVLSVTLHETIRKGLTSFFRNFSDSLLHVWSINCQQGLSGSQSSASLKTIYVVAFFTSLIFYTAYSIFLTSYLSLSKPNLPFSDVEGYIEDGSYELIARNGHPVVKFILNDNDTFFARMKKLLKKDLPVSDLEGFLQMCGEKSAYYISYVLVLIRSEEVPCRTTHFEVGHEYVLYAFIFNKNITFKELFNYQIERFREFGLLQYYVMKPLESESIIPEEDNLYFATISLKQVIPILTIFFSGAFFSVIILLIEKVYLISLEKRVISV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-