Prob032626.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- -
- Assembly
- GCA_028476575.1
- Location
- CM052018.1:55086772-55096925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 1.3 4.5e+02 3.4 0.8 1 10 127 136 127 142 0.94 2 30 5.5 1.9e+03 1.4 6.2 1 23 155 178 155 178 0.88 3 30 0.13 47 6.5 4.2 2 23 189 211 188 211 0.94 4 30 0.011 4 9.9 0.4 1 20 303 322 303 324 0.94 5 30 0.36 1.3e+02 5.2 1.3 1 23 331 354 331 354 0.92 6 30 0.036 13 8.3 2.6 2 23 364 386 363 386 0.91 7 30 0.0018 0.64 12.4 2.4 1 23 689 712 689 712 0.97 8 30 3 1e+03 2.3 0.3 5 23 719 737 718 737 0.93 9 30 0.00035 0.12 14.6 0.5 1 21 1022 1042 1022 1043 0.95 10 30 0.046 16 8.0 0.7 2 23 1051 1073 1050 1073 0.90 11 30 3 1.1e+03 2.3 9.1 1 23 1083 1106 1083 1106 0.95 12 30 0.24 85 5.7 0.0 2 20 1131 1149 1130 1151 0.93 13 30 0.6 2.1e+02 4.5 1.1 3 23 1160 1181 1159 1181 0.92 14 30 0.0006 0.21 13.9 0.4 1 23 1192 1215 1192 1215 0.96 15 30 1.2 4.2e+02 3.5 0.0 2 20 1247 1265 1246 1267 0.92 16 30 0.0063 2.2 10.7 4.1 1 23 1274 1297 1274 1297 0.97 17 30 0.062 22 7.6 0.5 1 23 1306 1329 1306 1329 0.95 18 30 0.83 2.9e+02 4.0 2.6 2 23 1420 1442 1419 1442 0.94 19 30 0.22 77 5.9 1.4 1 23 1452 1475 1452 1475 0.93 20 30 0.0038 1.4 11.4 0.1 2 20 1553 1571 1552 1573 0.93 21 30 0.0079 2.8 10.4 3.6 1 23 1582 1604 1582 1604 0.98 22 30 0.24 85 5.7 0.1 2 19 1721 1740 1720 1743 0.91 23 30 0.0084 3 10.3 1.9 1 23 1747 1770 1747 1770 0.92 24 30 0.039 14 8.2 0.1 3 19 1919 1935 1917 1937 0.94 25 30 0.071 25 7.4 0.2 2 23 1944 1965 1943 1965 0.96 26 30 0.38 1.3e+02 5.1 0.2 3 20 1970 1987 1968 1987 0.95 27 30 0.0054 1.9 10.9 0.0 2 21 2019 2038 2018 2039 0.94 28 30 0.052 18 7.8 0.0 2 23 2067 2089 2066 2089 0.96 29 30 0.33 1.1e+02 5.3 2.2 1 23 2092 2115 2092 2115 0.95 30 30 2.1 7.5e+02 2.7 2.0 1 19 2123 2141 2123 2144 0.92
Sequence Information
- Coding Sequence
- ATGGCCGCAGGACATGGGATAAGAAAAAGGAATTCGGATAAGGAAAAGTTGCCCTACTTGAGGAATGCCAAGCTCAGAAACCTCGAATATCCGGAAAAGTCTGAGGCGGATTTATTAGAAAAAAAATCAACCCCATCGACTAATGAGCCATCCATTTCATCGAAACGAGATGTTCGCGCCTCAACTTCTAGTACGAATGAATCTGGCTTCGTCATCCGTGAATGTAGAAAGCGGAAATCACAACTCAATCAGATTCCCTCGGATACTTCGTCGGATGAAGACAAGACCGATGCGAACGATGGGCCGAGAAAATATAAAGAGAACTCAACTGCAGCCGTCAAGAAGAAGGCAGTAAGAGAAACTGTGGAGGAACCTGTTTACAAATGTCCAATATGTGAATTGACATTTGATTGCATTACGTCATTAGAATGCCACATTACACGGTACAACAACACCGGTAAGCATGCGTGTACCAAGTGTGATATCCGTTTTGTTCACGCCCGAGACTTACATTGCCACTCCAAAAGTGCCCACTCTAGCAGCGATAACGCTGAAAGGTCTCTAATCTGCAATCAATGTCACCAAAAGTTCCAAGTCTATAACAACTACCGAGCACATATCAAGCATTATCATCTGGAAGTTGAAAAGTCGAAGGAGAAGCCCACTCCAAGATTGCGAGATAAAGACAACGATAGTTCCAAAGTCAAAAACAACCCTGTCATCTCTCAACGTAAAAGTAACGAGGTGGAACGCAAAAAAGAAGAATCTCCAGAATCTGGACATAATTTAATGGCGAATAAGCCCACTAGAAGAAATGGAGATATCGACAATAAGCCGAAGGATGATACGGAAAATCTAACTGTTTCTGAAAAAAGAAGGTCGGGCAAACATAGGAAGAAGGTTATTTACAAATGCGACACTTGCGGCCTGCAATTCCATGACGAGTCAAGATTGAATGTTCACACTGTCACATACAGCAAAGGCGGACAACATGCGTGTGCTACATGCGGAATCTGCTTTATTTATGTACGAGATCGACAGCGTCATGAGGATACCGCTCACAAGAAAGATGGTTCCGAAAAACCTTTGAGTTGCCAAATATGTCAGCAAAACTTCAGATTTGATGAAAATTTACATGCACACATGGTGCATTACCATGATAAAGCTGTTGACTGGAACAAAAAATCCAAAATGAGCGCAAAAAATACGGAGGAAACCACAAGTTTGAATCAAAACAATACGAATTCGCCGGACGAAAAACCCAGCGTAGAAAAGAAAATGTCAAATTCTCCGAAAACTTCGCAGCCAGAACCAAAACAAACTGGTAGGAAAGAGATCCAAACTAAATTGACTGACTATCTGATAAGAGGCTCTGTGAAACCAGACCCGAAATCGAAAAAAACAGAAGCGCCTACCAGCAAATCGAGTCCCAATCAAAACTCACAGATGCAAACTAAAGTCGAGGTCAGAGAAAAATCTATTTCATTTACCGAATCCCCCGTTGAGCTGATGGGCCACATAAAGGAAGAAATCGATGCCGACTCTAATGAACCTTATCAAACGCCTCACGAATCAGATGAAATTTTACGACGCAGACACGGATGTCGGGAATGTTTTGTCAGACTATCTACGATTAATCTGCCCATGAAAATGGAAATCGAAGATTCTATGGCTGATGCAGATGAAGAAGTATCTACGCACGAGCACTCGCAAGAAAATAACATCAGCGATCCTTCTCCAATGGTTCAAATCCCCATGAACTGGGCGCAAGAAGATACCGTCAACCACGTTTTCGAAGGAAGAATTATAAAGCACGATGTCGAAGAAAGCATGGAGATTGATTCCCAAGAAGATATGAACGTCGACGACGAAGGAAGCATTCATGAAAATCGACGTGAAGATTCTGAAGAAGCAAAAGACTTGGAAAAAAAACGCACGGAAGATAAGCTTCGGTCCCAAAAATATATAGTCAAGCTGATGAGATTAGAGAACGCTACACTGCCTACCAGCGTAAAACTTCCCGAAAAACTTGTTGATCCGAACGTAGCGGTAGAAGCCTCTGACTTTACATGCAATATCTGCAAGTTGACGTTTAATGACGAAAGCAAATGGGAGTATCACCGAAAAAAGTTTCATTTGGCTTACAAATCGACTATCTGTCAGGCTAGATTCAGCTGTCAATCAAAACTTATTGCCCATTACCTCGAGCACATACCAACGTACAGTAGCCAATGTTGTGTCTGCGGAGAATTGATGGAAAATCACCGAGTGTTGTACCATCATCTTAAAGTGCACTGCGTGGAGATTGACCAAACGGTCGAAGGGCCCATGGACATGACAGTCACGTGCACTCTCAATAGGAAAATTTTTCGATGCGTATGTGGTTTGCAATGCGAAAATGAGATGGGTTACAAGAACCACACAGAGAGCTGCGAAGGATGGACCAAAGCCCATTACGTCGCTTTTGACTACAAAATGCCTTACTTTAATCCCCGTAAAAGTACGTCATCGACCGTTCCCAGAGAGTCGACAAATCCAACGCCCAGCGATGATGGTGACCATAAAAGTAACGACAATGAATATCTGGGCTCAGATGGCAGCGATTCGGAAACCCTTAGCGTCCAATCAGATTTTATGGAAAAAGATTATCCTCTGCGTTCGAGAAGTTCAGGGCTGGATCTGGACGACTTTGACAACAATGCAGAAAACAGAAGCCTAAGGTCAAATTCACGTTTAGAAAAAGATGATCCCCGGCGGCCAAGAAGCTCAACGATGGACTCGGCTCCGGACAATACAACGCGATCTGGAAGAACATTAAAAAGCGTTAAACACTTTACGTTTCCTGAAGACACACCGAAGAAACAAAACCAATCAGAAGCAGTACCGAAACCTGTGAGCAGTCAAGAAAATGGAAACCGGAAGAATTCGACCAACAAGAATCCCGTTCCATCTTCGACGACAAGCATCAAGGTCATTTCATCGCAGGCTGGTAATTTTGTCTTCCTGCCTGAAGAAGAAGCAAAGAAAGAAGGCGGAGAAGCAGGATCGCCGAAAATTGTTAGTTACCCGTGTCTCGTCTGCGGTACAAAATTCCAGAACCTTGACAACTTCAAAAAACACCAGCAAAGTTATTCGAAAGAATTTAATGATGAATGCACATACTGTCAAACTAAGTTCCCAGGGAAAACTTTGCTAAGATATCACAATCAGGCGACGCACAATCCAGATAATGACAGAAACTACTCGTACCATTGCCAAAAATGCAGTCAAGGGTTTTTCAAAAAATGCACCTTGAGAATGCACATGACCCACATACACCGTCTGCAATGGGACGAATCCATGGCGCAGCCAGCAGATGAACTCGGCGACGACGATACATCAGGAGCTCTCAAGTGCGAAGTTTGCAGCATCGAATTCGACACAAATGAAGACTGGGTAGCTCATCGTGACTTGTACAATAAGGAACTCATGCGCTATTGTCGGGAATGTAAAATTACGTTCCAAGGCGCATTCCTCTTGAAACAGCACAATAAACTTTTCCATTTAAGCCAGGGAGCCATGATGAAATACAGGTACCCATGCAACACTTGTGGCGAAGGTTTCGAGAACGACAATACGCTCAACTCGCACATGCTTCACGTGCACGTGGCCCAGAAGGAAAAGGAGCTGCCGTTTGATTCCTTCATGGACGACATTGATGTTGTTTCGTACGAGACGGAAAATAATTCGGTGGGCCTCACTTGCGAAGTCTGCAGCTTGGTATTCGAGTCCGTTGAGAGCAGGCAGGCGCATATAGACGAATTTACCAGTGATGGAGAATTCCACTGTGACGAGTGCTACAGAAGATGCAGAAACGCTGCTCTGTTAGAAAGTCACCAGAAGATGACCCATATGTCCATGGAAAAAAATCCAAAATACAAGTGTGCGATTTGCCCAGAAGTGCTGTCGAACTCTCTTTCACTCGACAGTCACGAGAAGCACTTCCATAACCGACAATCCACGGGCTTGAAAAAAAATAGCACGCGCACAGAAAGATTTGATCACCAGTACAGCCGACTGAGCCGAGTAGGCCGACTACCAGGGAAAAACTATGAACTGGCTATGCAAAATAATGTAGTTTCAAGACCCGCAACATTGGTTGAAAGACCCCCTCAAGAAGTAACATCTGGGATACAGCTTGCAGTGCAAACTCCCATATTGGTCACTAGTGCGCATGCCGCATCTACTACAGAAAACATTTCCCAGCAGAATTTATTGAAATGCACTACATGCAGTAATTGGCGATTCGTCTCAGAAAAGCATTTGAGATCTCACGAAGAGAAGCACACAACGGCATTCCTGACTAATAATCCTTTCAAGTGTATTTATTGCGAAGAGGGTTTCGAACGTCACAAACTACTGGCAATACATCAGGCCCACATCCATCGACAGGCACCACCAAAGAACTCTGCCCCCTCTCAAAAAGGTCCTGAAGAGGTAGTACAAGTTCATCTCGATGACAACACCACGTTCCACATCAACGTCGCGCTTGGACCGAACATTTATGGAATTACCAACTTTCCGTCGTTGCAGGACGCTAGTTTGAAAGAATTGATAGCGAGCTTCTTCACTGACTACAACGCCAAGTATCCGATAGCCGGTGCACAGCTTCAACTCCAATGCTCAGTCTGCAAGCTCGTGTTCCCAAACACCCGTGATCTGGCTAGACACATCGATCGATACATTCAGGAAACTTCGGCATCATATGACTGCAATTTCTGCACTAAGCGGTTCCGCTGGAAGGCATGTTTAGAAGATCATATCCGCAAGCACTTTCACATCAACACCAATAAAATCTTCAACTGCGCCATATGCAAAGAGCCTTACCTGACGGAAATTTCCCGCTTTGCGCACGTGGCACACTTCCACCCTAAACAGGACACTATTTTGCGTGCCTTGCTGTTGAAGGAAGAACAGAGACAGAAAAACCACAGTTCTCAGAGTATTGCGACTCAAGAGCTCAGCAGACGTATCCAGAGAAGTTTGGATCAAGCTTCCACTTCGGACGATGTCATGATCGTGGATGAAAAATCTGCAACGCCAAGTCATTCCAGGGCCCAAGATATACCGAGTTTGGGCAATACGATAGCATACATTCAACCAACGATGGAAAAGGTTTTGATGTGCCCCGTTCTTACCTGTCAAAAGTTTTTCTTCACGGCGGAAGAATACCGTCAACACGAAGCAATTTGCAGTGGCTTTCATTGCCAATTATGCACAAAAAAGTTCAACTCTGAAGTTGCTCTCAAAGTCCATACCGACAATATGCACAAAAACCCCGTTCCTGCACCATCCACTTCCTCAGTTCCGGAAGTTGCAAGCAAACAAGCGCCAGCCCAGGAAAATGAAGGTCGGGTCAACCCGGAACTAGTTGGTCGTTTAAAAGTCAAGTCCTTCGCGAAGCTCATTGAAAACCAAGATGAAGATTCACCCAGACTCCAAAACCCATCAGCCCCTCCTCAGCGAACCGAGCAACTGGTCCGCAACCCTCATTGGACCCAGATACAACTGAGCCTCGAAGATGCGGCCTTGATCCGGGCAGCTGCCGTGAGTGTCAACCAAAACTCTTTAACGATGAATCAAAACAAACCAAATGAATCCAATCTCCAACCGCTTGGTAACAAAAGGCTCGTTCTGAATCCTATAACAGACCTCATGAAACGCTCCATTGCCTCAAACTTGGGACAGCAGCTCAAGACCAAGGTCGCCCAGATATGCAAGATCTGCCAGGCCGTGTTCCCTGACAAGCTCCAGCTCACGCAGCATTTCTCTGAAAAGTGCTGGGTCAATCGCTGCTTCATCTGCAACCAAGTCATGACAACTTCTGAAGCTTTGCAGTACCATGTGGCCATGCACCCTGACATCAATTGCCGTATCTGCAATGCCGTGTTTCACGACAGGCAGGACTTCCTCCTGCACATGCCTGGATGTGTGGAGATGGTAAAGATGAACTGCAAGCCTTATGACAACTTCGTCATGAACAACTCCAAGGTTGGCAACGCTCAGCCAGATATCAGATGCGCCATCTGCAACAGAGTGTTCTCCACCGTCGAGGAAGTCACAGCCCACCTCAAGGTCAACTGCAAGGCTCCAGTCATGATGGGCTCCAACAACAAAGATCCTCAGGTCAACTCGAATTCTGATCCGCAGATGGGCATCAGCTGTAAAATATGCGCCAAATTCTTCCCCAACGTTCCAGCAGTCACGATGCACATCAAGATGGAACACTGCGATTTCTACTGCGATATTTGTCACGGGAAGTTCTACTCGATAAAATTTTTGTACAGCCACATCGACCGGGTACACGGTATTACGGAGCACGCTGTTTACTTTTGCTCCAGGTGCAAAACAGCGTTCCCACTGAAGACTGAGTTGGATAATCATAACTGTTCCACTCCAAAAAACAACGGGAATAGAGGTTAG
- Protein Sequence
- MAAGHGIRKRNSDKEKLPYLRNAKLRNLEYPEKSEADLLEKKSTPSTNEPSISSKRDVRASTSSTNESGFVIRECRKRKSQLNQIPSDTSSDEDKTDANDGPRKYKENSTAAVKKKAVRETVEEPVYKCPICELTFDCITSLECHITRYNNTGKHACTKCDIRFVHARDLHCHSKSAHSSSDNAERSLICNQCHQKFQVYNNYRAHIKHYHLEVEKSKEKPTPRLRDKDNDSSKVKNNPVISQRKSNEVERKKEESPESGHNLMANKPTRRNGDIDNKPKDDTENLTVSEKRRSGKHRKKVIYKCDTCGLQFHDESRLNVHTVTYSKGGQHACATCGICFIYVRDRQRHEDTAHKKDGSEKPLSCQICQQNFRFDENLHAHMVHYHDKAVDWNKKSKMSAKNTEETTSLNQNNTNSPDEKPSVEKKMSNSPKTSQPEPKQTGRKEIQTKLTDYLIRGSVKPDPKSKKTEAPTSKSSPNQNSQMQTKVEVREKSISFTESPVELMGHIKEEIDADSNEPYQTPHESDEILRRRHGCRECFVRLSTINLPMKMEIEDSMADADEEVSTHEHSQENNISDPSPMVQIPMNWAQEDTVNHVFEGRIIKHDVEESMEIDSQEDMNVDDEGSIHENRREDSEEAKDLEKKRTEDKLRSQKYIVKLMRLENATLPTSVKLPEKLVDPNVAVEASDFTCNICKLTFNDESKWEYHRKKFHLAYKSTICQARFSCQSKLIAHYLEHIPTYSSQCCVCGELMENHRVLYHHLKVHCVEIDQTVEGPMDMTVTCTLNRKIFRCVCGLQCENEMGYKNHTESCEGWTKAHYVAFDYKMPYFNPRKSTSSTVPRESTNPTPSDDGDHKSNDNEYLGSDGSDSETLSVQSDFMEKDYPLRSRSSGLDLDDFDNNAENRSLRSNSRLEKDDPRRPRSSTMDSAPDNTTRSGRTLKSVKHFTFPEDTPKKQNQSEAVPKPVSSQENGNRKNSTNKNPVPSSTTSIKVISSQAGNFVFLPEEEAKKEGGEAGSPKIVSYPCLVCGTKFQNLDNFKKHQQSYSKEFNDECTYCQTKFPGKTLLRYHNQATHNPDNDRNYSYHCQKCSQGFFKKCTLRMHMTHIHRLQWDESMAQPADELGDDDTSGALKCEVCSIEFDTNEDWVAHRDLYNKELMRYCRECKITFQGAFLLKQHNKLFHLSQGAMMKYRYPCNTCGEGFENDNTLNSHMLHVHVAQKEKELPFDSFMDDIDVVSYETENNSVGLTCEVCSLVFESVESRQAHIDEFTSDGEFHCDECYRRCRNAALLESHQKMTHMSMEKNPKYKCAICPEVLSNSLSLDSHEKHFHNRQSTGLKKNSTRTERFDHQYSRLSRVGRLPGKNYELAMQNNVVSRPATLVERPPQEVTSGIQLAVQTPILVTSAHAASTTENISQQNLLKCTTCSNWRFVSEKHLRSHEEKHTTAFLTNNPFKCIYCEEGFERHKLLAIHQAHIHRQAPPKNSAPSQKGPEEVVQVHLDDNTTFHINVALGPNIYGITNFPSLQDASLKELIASFFTDYNAKYPIAGAQLQLQCSVCKLVFPNTRDLARHIDRYIQETSASYDCNFCTKRFRWKACLEDHIRKHFHINTNKIFNCAICKEPYLTEISRFAHVAHFHPKQDTILRALLLKEEQRQKNHSSQSIATQELSRRIQRSLDQASTSDDVMIVDEKSATPSHSRAQDIPSLGNTIAYIQPTMEKVLMCPVLTCQKFFFTAEEYRQHEAICSGFHCQLCTKKFNSEVALKVHTDNMHKNPVPAPSTSSVPEVASKQAPAQENEGRVNPELVGRLKVKSFAKLIENQDEDSPRLQNPSAPPQRTEQLVRNPHWTQIQLSLEDAALIRAAAVSVNQNSLTMNQNKPNESNLQPLGNKRLVLNPITDLMKRSIASNLGQQLKTKVAQICKICQAVFPDKLQLTQHFSEKCWVNRCFICNQVMTTSEALQYHVAMHPDINCRICNAVFHDRQDFLLHMPGCVEMVKMNCKPYDNFVMNNSKVGNAQPDIRCAICNRVFSTVEEVTAHLKVNCKAPVMMGSNNKDPQVNSNSDPQMGISCKICAKFFPNVPAVTMHIKMEHCDFYCDICHGKFYSIKFLYSHIDRVHGITEHAVYFCSRCKTAFPLKTELDNHNCSTPKNNGNRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -