Basic Information

Insect: Platygaster robiniae
Gene Symbol: -
Assembly: GCA_028476575.1
Location: CM052018.1:3363534-3368573[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0066 2.3 10.6 0.8 1 23 571 593 571 593 0.98

2 17 0.055 19 7.7 1.8 2 19 600 617 599 620 0.90

3 17 1.4 5e+02 3.3 0.9 2 23 626 647 625 647 0.95

4 17 0.00017 0.06 15.6 1.2 3 23 656 677 655 677 0.97

5 17 0.013 4.6 9.7 1.2 1 23 684 707 684 707 0.92

6 17 0.00011 0.04 16.2 1.1 1 23 713 736 713 736 0.92

7 17 0.4 1.4e+02 5.0 0.5 2 23 744 764 743 764 0.93

8 17 2.6e-06 0.00091 21.4 4.3 2 23 770 793 769 793 0.96

9 17 1.2e-06 0.00041 22.4 0.2 1 23 799 821 799 821 0.99

10 17 0.00053 0.19 14.1 3.3 2 23 833 855 832 855 0.95

11 17 0.026 9.1 8.8 1.4 1 23 861 884 861 884 0.94

12 17 0.007 2.5 10.6 0.6 3 23 919 940 917 940 0.93

13 17 0.017 5.9 9.4 0.9 2 23 947 969 946 969 0.96

14 17 6.2e-05 0.022 17.0 1.1 2 23 977 998 976 998 0.96

15 17 0.015 5.4 9.5 3.4 1 23 1004 1027 1004 1027 0.94

16 17 2.4 8.3e+02 2.6 3.2 2 23 1034 1055 1033 1055 0.96

17 17 0.022 7.7 9.0 3.4 1 23 1061 1083 1061 1083 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0066	2.3	10.6	0.8	1	23	571	593	571	593	0.98
2	17	0.055	19	7.7	1.8	2	19	600	617	599	620	0.90
3	17	1.4	5e+02	3.3	0.9	2	23	626	647	625	647	0.95
4	17	0.00017	0.06	15.6	1.2	3	23	656	677	655	677	0.97
5	17	0.013	4.6	9.7	1.2	1	23	684	707	684	707	0.92
6	17	0.00011	0.04	16.2	1.1	1	23	713	736	713	736	0.92
7	17	0.4	1.4e+02	5.0	0.5	2	23	744	764	743	764	0.93
8	17	2.6e-06	0.00091	21.4	4.3	2	23	770	793	769	793	0.96
9	17	1.2e-06	0.00041	22.4	0.2	1	23	799	821	799	821	0.99
10	17	0.00053	0.19	14.1	3.3	2	23	833	855	832	855	0.95
11	17	0.026	9.1	8.8	1.4	1	23	861	884	861	884	0.94
12	17	0.007	2.5	10.6	0.6	3	23	919	940	917	940	0.93
13	17	0.017	5.9	9.4	0.9	2	23	947	969	946	969	0.96
14	17	6.2e-05	0.022	17.0	1.1	2	23	977	998	976	998	0.96
15	17	0.015	5.4	9.5	3.4	1	23	1004	1027	1004	1027	0.94
16	17	2.4	8.3e+02	2.6	3.2	2	23	1034	1055	1033	1055	0.96
17	17	0.022	7.7	9.0	3.4	1	23	1061	1083	1061	1083	0.97

Sequence Information

Coding Sequence: ATGGCCTCCAATCCGCTGATCAATGATGAAATTGATCTTTCGACCTTCCTCATTTTCAACAACAATGCTCAAAACCAAGGCCGACAAACCAGTCTTCAAATTGGTACCAAATTTCCCACCTTGATACAAAGCAGCAAACCCATGATCGCCAGCAAGCAAGTAAAAAATATCAGTGAGTTAAAGAAACTCACTCCAGCCATAAAAATCATGGGCCAAGAAAATGCGAATTTCGTGGAGCCACCAAAAATTCTCAATGTCACTCTGAGTTCCGGAATCCGAAGTGAGATGAGAAAATTTTGCCGTGCCTGTGCAGGAATGAAAGCCCACATGGTCGACATTTTCAGTGAAAAAGGAAAGCAAATGAGATTGAGTCAAATGATTTCACATTTGGAGGATATTGATGAAAAAACGAGTCTCAGTACCCTTCTTTGCATGGAGTGCATCTACGAGTTGAAAGGCAGTTACAAGTTTTTTTTACAAATCAAAAAGGCTCAGATCAAGCTCAAGTCGATTCATACGAAAATGGCTACAGTGGAAGAAAATCCTGTTGGACTGCAGATTTTTCCCAATTTGGAAGTGTTAAAAACTTCCCAAGACCATAATTATTTCGAACCACCAAAAATGGCAAAACAAATCAAAGAAGAAGTTATTACTATAAAATCCGAAAACACAGAATTCATTGAAGAATTCGACCCCGAGGATTTATCAGAATCCCAAGAAGAAAAAGACGTAGGTAAAAAAACATGTACGGTGAATGGCAGTAAAAGGCCCAAAATTCTTGGCAGTGATAATAGAAAAACGGGCATTTCACTGAAAAATTGCTCTGTGCGACCTGTGGTGGAATTTGTACAACCAACTAACATCAGTGAAACACCTCCAGCAATACCAGAATCTACAAATACAAATCCTGAGGAAAATAAAGAGGATTTAAATCGAAAAGTTAAACAAGAAAAAGAAGCTGAAAATGCAGTGATTCCCACGGAAAAAGAAAAAGGAATAATGTACATCACTGTGAAAGGATCGAGACCCAATGAGTTGCTTCTTGTGAAAGTGAAAAAAATGGACAAATCGAGTGAAAAAAAAGGCGATGTCAATGTGGACCCCTCGAAAACCCCCATCGACACGAAGGCTATGAAACCCATAGGAAAATTACTTTCTCGTGTTGATTCTGTCGTGAGGGATAAAAGCTTGTTCCCCGTGAGAACTCGCAGTGAAAGAGAGCAACAAATTAACAAACAAATTGAGGAATACAAAAAACTGAAGGAGCAAGTTCTCGGTCGAACAGAGCCCATCGTCGAACATTCATCGTGCCTATCTTTTTTAGAACTCAAAAATAACGACGTTAAAGTAAACTTGGATATGGATTTCAAAGAAAATCCTTATTTCTCGTGCAATATGCAACAAGAGATTGTTTTTGACCGAAAAATTGACGACATGGCCACGATCTCGAATGACATTAATGGGATGGTTATTAAAGAAGTTCGTTATAATAATAAAACTTGGAAAGATGAAAAAGTCAATGACAGAGATTGCCTGACTCGGATAATTCAAGCACTCAATGATAGCGGTTGTGAAAAGAATTTGAAAGAGTTCTTGGAGTACCTGAAATATCGACGAATCGTCGTGTCGAGGCTGAAAGATGAAGATATCGTTGGACTTTATGACGCCAAGTACAGAAAAGACGGGGCTTCCTTAAGAGATGCAAATTTTTTTGAATGCGATTTTTGTTTCGAAATTTTCATTCTGAGGGACAAATTGAAGGAACATGAAAAAACTCATGATTTCAAGATGATGTTGTGTTGCGATGATTGCGGCGAAGAATTCAAGACAAATAAGATGAAGAGGAATCATAGTACGAGTTGTAATAGAAAACTTGTTTGTAGATACTGCCAAGAGATCCTGGAATCAAGAGGAAAAAAACGAAAGCACGAACAAAAGCACTGCGACAACGAACATGGTCAGTTATGTGACATGTGCGGAGAAAAGTTCAAACACCAGGCCACCCTGGACCAGCACATCAAGATCCGGCACATGGATTTGGAGAAAATTTTCCAATGTCAGATTTGCCCGAAAAAATTCGCCCTGAAAACAAAGCTCAGCTTCCACGTCAAGTCAGTGCACACTGAGACCCGCGCATTCCTGTGCGAGGACTGCGGCATGGATTTCAAGAATCCGGCGAGTCTGCGACACCATCGGGTCAGGAAACACCAGCCCGAGGGTAGTTTAAAGGAATGCCTTGTTTGTGGGAAACTCGTGGTGTTTTACAATTTTTCCAAGCACATGCTCACGCACAGGGATACCAGGATCAAGTGCCCTCACCCTCATTGCGATAAGAGTTTCAAGAACTCTTCGACCTTGAAACAACACACTCGAATCCATGATGACAAGAGACCGTACCAGTGCGATACTTGTGGGGTCGGGTTCAATCGTAGGGACGGTCTTCGTTTGCATATGAGGGTTCATGACAAGAGCAACAGTCGAGCACTCAAGGAATGCACATGTCAGGTTTGCGGAGAAAAATTTCCAAACCACTCGACCCTGGTGATCCACAGGAACCGTACACATAAGGGTGGCAGGAAGTTCACCTGCACGATTTGCAACAGGTCCATGATCTCTGCTGCCTCCCTGTGTCTTCACCTGGAGCACATCCACAATGAAAAGACCGAAAACCCCGAGTTTGCTCAACAAGTTGGCATCGACGCCAGGGTCGAAGGGGTCGGTGACAAGGTCGAGTCAACTCGTCGAAGGGTCATATGCTACCAGTGCGGCAAGACGTTCAAGACAGAGATGATCCTGAGGACACACGTGAAGAACACCCATACAGAAAAGAAGCCAATGAAATGCACAGATTGCGAGGTCTTCTATACCTCCGGAGTCAGGCTCAAGCACCACATGATGGTCGAGCACAATAGGCTAGAGGGGACCTTGGAGTGCCCGCACTGCCCCAAAAGATTCGTCAACCAGTTGAGGCTTAGGACCCACATGGTCTCGCATTCGGAGGAAAGGCCTCATAGCTGCGAGCTCTGCGGTTTTCGCCTGAAAACGAAGATCCAGTTGATGAAACACAAGCAGAACAAACACAGCAACGTGAGACCTTTGCAGTGTCGTTACTGTGCGTGGCGCTGCAAGCAGGTCAGCGCTCTGGTTTGCCATGAGCGCACTCATACGAACGAACGCCCGTACTTTTGCACAGTTTGCAAACAGAGGTTTAAGTACCTTGGGGATAAGAATAAACATGAGAAACGGCACGTTTCCATGGGTGGCGAGGGATTCAAGAGGACCATCACCGGCAGGGATCCTGCTGTCGATGCCAAGCCAGTGTTCAAGCAGGAAAGCGAGGACAACTCCAAAAGTGATGATGATATGTCCATCACGGATCACACGATTATTGATGACCCAATGTCCATAGCGGATCAGAAGATTATTGATGATGTCGAGGAGGAGATGGACGTCGATGAAACCGAGTTCATCGAGGCTGGTGACGCCAGGATCATCAAGTTCGAGGCACAGGAACTTGTTGATGAGAATGGACAAACATACCAGGCGACTTACCTCGACCAGGACTATGAAGAAAATTCCGAAGAAGCTTCAGAAGCGCACCAAGTCATAATGAACATCGACCCCAATGGTCAACTTTACACGGAAGAAGTTACGGAGGAGACCATCGAAATCGCGAATGCAGCATCCTCAGGAATGATCACGAGCGACATCATGGAGTCGCATACGGTTTTTCAAATTCAGCCAGTTTACGAAAACGGCGAATACAAGGAGATACCGGTCATCATGCTGCAAAATTTGGATGAAAATGGTTCGCAAGCTGACCTCTCCAATGCCTCCATCACGCTTTGA
Protein Sequence: MASNPLINDEIDLSTFLIFNNNAQNQGRQTSLQIGTKFPTLIQSSKPMIASKQVKNISELKKLTPAIKIMGQENANFVEPPKILNVTLSSGIRSEMRKFCRACAGMKAHMVDIFSEKGKQMRLSQMISHLEDIDEKTSLSTLLCMECIYELKGSYKFFLQIKKAQIKLKSIHTKMATVEENPVGLQIFPNLEVLKTSQDHNYFEPPKMAKQIKEEVITIKSENTEFIEEFDPEDLSESQEEKDVGKKTCTVNGSKRPKILGSDNRKTGISLKNCSVRPVVEFVQPTNISETPPAIPESTNTNPEENKEDLNRKVKQEKEAENAVIPTEKEKGIMYITVKGSRPNELLLVKVKKMDKSSEKKGDVNVDPSKTPIDTKAMKPIGKLLSRVDSVVRDKSLFPVRTRSEREQQINKQIEEYKKLKEQVLGRTEPIVEHSSCLSFLELKNNDVKVNLDMDFKENPYFSCNMQQEIVFDRKIDDMATISNDINGMVIKEVRYNNKTWKDEKVNDRDCLTRIIQALNDSGCEKNLKEFLEYLKYRRIVVSRLKDEDIVGLYDAKYRKDGASLRDANFFECDFCFEIFILRDKLKEHEKTHDFKMMLCCDDCGEEFKTNKMKRNHSTSCNRKLVCRYCQEILESRGKKRKHEQKHCDNEHGQLCDMCGEKFKHQATLDQHIKIRHMDLEKIFQCQICPKKFALKTKLSFHVKSVHTETRAFLCEDCGMDFKNPASLRHHRVRKHQPEGSLKECLVCGKLVVFYNFSKHMLTHRDTRIKCPHPHCDKSFKNSSTLKQHTRIHDDKRPYQCDTCGVGFNRRDGLRLHMRVHDKSNSRALKECTCQVCGEKFPNHSTLVIHRNRTHKGGRKFTCTICNRSMISAASLCLHLEHIHNEKTENPEFAQQVGIDARVEGVGDKVESTRRRVICYQCGKTFKTEMILRTHVKNTHTEKKPMKCTDCEVFYTSGVRLKHHMMVEHNRLEGTLECPHCPKRFVNQLRLRTHMVSHSEERPHSCELCGFRLKTKIQLMKHKQNKHSNVRPLQCRYCAWRCKQVSALVCHERTHTNERPYFCTVCKQRFKYLGDKNKHEKRHVSMGGEGFKRTITGRDPAVDAKPVFKQESEDNSKSDDDMSITDHTIIDDPMSIADQKIIDDVEEEMDVDETEFIEAGDARIIKFEAQELVDENGQTYQATYLDQDYEENSEEASEAHQVIMNIDPNGQLYTEEVTEETIEIANAASSGMITSDIMESHTVFQIQPVYENGEYKEIPVIMLQNLDENGSQADLSNASITL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -