Prob063923.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- -
- Assembly
- GCA_028476575.1
- Location
- CM052025.1:26281664-26289042[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.61 2.1e+02 4.5 0.1 6 21 250 265 247 266 0.89 2 12 0.0019 0.67 12.3 0.4 1 23 272 295 272 295 0.94 3 12 0.0091 3.2 10.2 3.6 2 23 308 330 307 330 0.96 4 12 0.00038 0.13 14.5 0.3 3 23 343 363 343 363 0.98 5 12 1e-07 3.6e-05 25.8 1.0 3 23 401 421 399 421 0.97 6 12 0.00063 0.22 13.8 0.6 1 23 426 449 426 449 0.97 7 12 4e-06 0.0014 20.8 2.1 1 23 526 548 526 548 0.95 8 12 0.0015 0.52 12.7 0.1 1 23 556 578 556 578 0.96 9 12 0.13 46 6.6 4.8 1 21 584 604 584 605 0.93 10 12 0.001 0.35 13.2 2.9 1 23 635 657 635 657 0.99 11 12 0.13 45 6.6 0.0 1 23 717 740 717 740 0.97 12 12 2.9e-05 0.01 18.1 3.4 1 23 743 766 743 766 0.98
Sequence Information
- Coding Sequence
- ATGACGGATCCGTCAATGGGTATCACGTGCCGTTTGTGCATGGAGGAAAGGAGCGAAATGCTGCTGATTTTCGGGGTTGAGGGCTTGCAAAGGCAAGTTCCGCAAAAGTTGCGCGCTTGTTTGCCAGTATTAGTCTACAAGACAGACCCCTTGCCCAAGCAAATTTGCCATTTTTGTGCCGCCAGACTGGACGACGCTTACGAGTTTCGCGAGCATTGCTTGAATGTTTACAAGAACATGCAGGCAAAGTTGCTGTCGATGAAGAACAAGCCGGACACTGTGCGGGTGTTCCTGGATGCTATGGCCAACTCACCGGATCCGTGTCAAGTTAAGCTTTGCAGTACGAAATCAAGAGCACCCCCTCCACTTGTCCCATTGCCAGCAACTTCAATGCAACCTTTCGGCAACGATTCTCAAACACCTCCCCAAAACGCAGCGCTCAAAATCAATCATGTTGCAACCATCGAACAATCACTGCCAGAAATATCATGTGAAGTGGAAATCAAAGAAGAAGAGGAAGAGCTCTATGATTCTCTCTTGAGCTATGATTCCAGCTTTCACGAAGTCAGCGAAAACCTAAACGAAACCTGGAGCTTTCGCAACATAGAGACTGAGCACAATATATTCGAGAACAATAAATCAACGAGCATTCTAGAGCAAGTTCTTAAAGGTAATCTGACCTTGAACGAGCACAAAAAAGAAATCAAGGGCAAAAGTGGCCTTAGTTCTCAATGGTGGTGCGCACCTTGCAATAATTACTACAGGAGTAGAGAAAGTTTAGTGAAACATATGCAAGTTTTTTGCCCTCGGAGGTACACGTGCAGAAAATGCAGTCGGGTTTTTTACACTGTCAAAGATTTGGCAATACACGAGGGCACAGAACACCTGAAAATTATCATAGACGATGATGATCCTTTGAATAAGTGCCATCTGTGTGACAGAGAGTTCCTCAGCTGGGAAATGTTGAGGCATCATAGGCTTCGAGAACATGTTGCTGAGTCGATTCAAATCGGTACCAGCACTTGGTGTCCATTATGCAACAGATTCTTCACGGATATCGATGCCTATGAAAAACACCAGCAACTTCATCTACCAGAGGAACCATTAAACGATGTTCCACCTATGGTCGTGGTACCAATTTTACCTCAATTAGAAGTCAATCAGAGAAAGGAATATAATGACGTGGTTAAGTCCCTAGCCTGTCCGACTTGTGGAAAAGTATGCACGCAACAAAGTGCACTTTCGAATCATATGAGAACGCACGAGCCAAAACGTTACAAATGCGACGTTTGTGGAAGATCCTTCGGCTTGTACGTGAGGCTGAAAACTCACAAAATCACAGAACATAATCAAGTGCCTAATAATTCCATAGAGTCGTGCGTTGAGCAGGAAGACGCTTTGAACGAGGAAAGGGAAGCTCGAGAAGCCCGTGAAGCTCGAGCACGAGTTCGTAGCAGAACCGTGGCTGAGTTGGAAAACGAAAATGATTTTGATGGGGAAAAGTCATCTCCAGCGAAACGAAATTCGTTGTCGCCCAAGGCTTTGTCCACGCATTCTGATGGTCAAGTCAAAAGCTTCAAATGCAAAACTTGCAACAAAAGTTTCAGCCAAAGATGGCTGTTGACGAGGCATGAAGGATCACATCGACGATCGATGGCGTGCACGTATACTTGCAGTATTTGCAATCAAGTATTCTTGGACCAGGCGATGTACAAAGCGCACCAGGCTGCACACTCAGTTGAGAGGACCTACCACTGCCCCAAGTGCAACAAACTTTTCTTCAAAGAAACTTCACTCATGTCACACAAGTGCTCAGGAAAACCATCGCTTGAAAAGAGTGATGATGGAAATGTACCAAATACTTTGCAGAATGCTTCACAGCAACAAATTATGAACGAAAAATACACCTGCTCCAAGTGCAATATAATCTTTGACAGTCATCAGTCGAGGAACTCTCACATGAGAGTACATAGCAAGGCATTCGTTTTGAAAAAACAAATTGGAATGCAGAAAAAGTCGGAGTCTTTGAAATTGAAGACGGTGGCTGGCACGTCGACGATATCTCGTGAAGAGGCTAAAAATGAGATGAGCATGCAGGATAATTTTCCGCCTCCAGTGAAACGAACACTTATCAGGACGAGTGGAGGTTATCGCTGTGGAGTATGCCAGTCGCCATTCGTCCTGCGAGAACTAGCTGTGGCCCACCTTAGGTCGGCGCATCCAGTTTACCAGTGCCCTTATTGTAAAAAACGATTTACAACTCAGTACATATTTACGAATCACGTAAAAACAAATCACCCTAATGAGTCTGAGAAGTGA
- Protein Sequence
- MTDPSMGITCRLCMEERSEMLLIFGVEGLQRQVPQKLRACLPVLVYKTDPLPKQICHFCAARLDDAYEFREHCLNVYKNMQAKLLSMKNKPDTVRVFLDAMANSPDPCQVKLCSTKSRAPPPLVPLPATSMQPFGNDSQTPPQNAALKINHVATIEQSLPEISCEVEIKEEEEELYDSLLSYDSSFHEVSENLNETWSFRNIETEHNIFENNKSTSILEQVLKGNLTLNEHKKEIKGKSGLSSQWWCAPCNNYYRSRESLVKHMQVFCPRRYTCRKCSRVFYTVKDLAIHEGTEHLKIIIDDDDPLNKCHLCDREFLSWEMLRHHRLREHVAESIQIGTSTWCPLCNRFFTDIDAYEKHQQLHLPEEPLNDVPPMVVVPILPQLEVNQRKEYNDVVKSLACPTCGKVCTQQSALSNHMRTHEPKRYKCDVCGRSFGLYVRLKTHKITEHNQVPNNSIESCVEQEDALNEEREAREAREARARVRSRTVAELENENDFDGEKSSPAKRNSLSPKALSTHSDGQVKSFKCKTCNKSFSQRWLLTRHEGSHRRSMACTYTCSICNQVFLDQAMYKAHQAAHSVERTYHCPKCNKLFFKETSLMSHKCSGKPSLEKSDDGNVPNTLQNASQQQIMNEKYTCSKCNIIFDSHQSRNSHMRVHSKAFVLKKQIGMQKKSESLKLKTVAGTSTISREEAKNEMSMQDNFPPPVKRTLIRTSGGYRCGVCQSPFVLRELAVAHLRSAHPVYQCPYCKKRFTTQYIFTNHVKTNHPNESEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01214292;
- 90% Identity
- -
- 80% Identity
- -