Prob008154.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- -
- Assembly
- GCA_028476575.1
- Location
- CM052024.1:30227431-30241435[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2 4.3e+02 3.5 0.3 2 19 1029 1046 1028 1048 0.85 2 12 5.9e-06 0.0021 20.2 1.1 1 23 1059 1082 1059 1082 0.94 3 12 0.00012 0.041 16.2 1.7 1 23 1089 1111 1089 1111 0.98 4 12 0.0081 2.8 10.4 0.1 2 22 1191 1211 1190 1211 0.94 5 12 0.00051 0.18 14.1 4.0 1 20 1227 1246 1227 1249 0.93 6 12 0.0092 3.2 10.2 0.1 2 23 1255 1277 1255 1277 0.95 7 12 8.8e-06 0.0031 19.7 0.1 1 23 1283 1306 1283 1306 0.97 8 12 0.00018 0.064 15.5 0.9 1 23 1313 1335 1313 1335 0.99 9 12 0.00056 0.2 14.0 0.4 3 23 1343 1363 1341 1363 0.97 10 12 8.2e-05 0.029 16.6 0.2 1 23 1369 1392 1369 1392 0.96 11 12 0.048 17 7.9 0.2 1 23 1406 1428 1406 1428 0.96 12 12 0.0023 0.82 12.1 0.1 3 23 1572 1592 1570 1592 0.97
Sequence Information
- Coding Sequence
- ATGTCTAGAACTATTCTGCTTTTACTATTCTACATCGCAACCACTACGCTAGCATCAAACACAACAAAATTGCTTCTAAGTTTATGGGATGAACAAGAAAGCGATTTTCATGTGAACCAACCGGAAAAAGTAGTGTTAATGATTGGAGATACAGGCACTGGAAAAACAACTTTAACGCTTCTTCTGACAGGCGCTTCTTTACAATCAGAAGAAGACTGCGAAGCCTGTAAGTCATATCATATTTCTGATAAAGATGGAAGAATTCATTCAACATTAAACTCGGAATTGACCATTCCTCAACGAGTGGTTGACGAAGAGTCCAAGACTGTATTTTACGATTGTCCGGGATTAAAGGATTCAAGATCACCAGAATACAACATAACTACTGGATATCTGATACACCATTTATTGACACGTGCTGAATCATTGAAAATCGTGCTCATTGTTGATCATTCAATTTTGAAAAGAGAAGAATCACCATCTACGATTCCTGAATTCTTGAAAAATGCTGTGATCCTATTCAAAAACATCGATACTTACAAAAATGGAATAGCAATGGTTGTCACGAAGGTCGTTAGAACTAATAGAACAGTCGAAGAAGAACCTCAACTGATAGCCATTGAAGAAATAGCTGATTTTCTCCAGAAAGTAAAATCATCAGCGACAGAGCGAATTTCACTGAAACGAGAAACCGAAGATGAACTGAATTTTAACCTCGAAATTTTGAAACTCCTTGATGCTTTGCTGCAAAAGAGTGATGACTCTGAAAATCGTTACCACAGAATAGGTATTTTACGCAAAACAGAGGAAACCGGTTCCTTGGAAAATTTGCCATTGATTCAGAGCGAAAAAAGCAACATAAAGAAGATCATCAAGGATAATCTCCAGTTTGTTGGTCAAAACAAAACAGTAGACTTTGGTTTCATACTGTCACGAACGTCACGAACAATCGTTGACTCCTTGATATATCAAATTCTTAATACAGAGCTCTTCCATGACACCTTGGTCATGTGCCAAGGTTTGAAAGAACACTATAGAAATGTACTAAATGAAAAAAAAAGTTTCATGGACTTGAACAGCACACTCTTTGAAGGTAACAATATTTTAAGTCAAATCAACTCCACAGAAATACTATTGTTCACACAACAGCTTCTTGATGCAGCAAGTGACATGATCATTGACTCGCACATTAGGGACGTGCGTAAACACATCAAATGGATGGAATTTTTATTAAAAGTCAGAAAAACAGAGTGCATCACACCACTGAGGTTTAGGCAGCAGATCGACGAAGTCAAAACTGATCTTAAATTTCAATATGATGTCAATGTGGAACAATGGGTTAAGCATTTGTTAGAAAAAAAGATGCCACCTATTATAACAGCCATATCTACTGAGATCACACAATTTTACTCTGAACTTGAAGAGAACACAACAGACATATACGAGTTGCGTGATTATCTGTCAATGGTCCACTCAAAGTTGTCAATGGTCGATATTGCAAAACCTCAATCTCTCTCCACTACCATCAAGGAGTTCCGAATCACTGTTTCGAAAAATAGTCTACTCGAACTTGATGATCTTAGCGAAAAAATGGATCCGGTATCGAAAGTCGTTATGAAATACAAAACTGTTATGGAAGCATCCGAAGCGAAGTTCAAAGACACTGTGAAACATATTCAGAATGATGTCTTATGGTACGACTATATGATTACCCTTTACAGTAATTTATCTTCGCCAGATCGTGAAACATTCGGAAGAGATATCGATGTAATACGATCTCTTATACATGCATGTGACACATCTAACACCGTCGATGAATTCCATTTTGAACAACTATCAAAGTTCGTCCCGAAAAACATTGAAGCATTGACTAGCCTAGCGCATCTTCATTTAAACACAAGGAAAAAAGAAATCTTAAGAATCATTTTGTCAACCTTGGTCCAGGATCCAACTATCTCGTGTCAAGAAGGCTCCCATATGACAGTCACTGGCCCTGTCATCAGAATCAGTCAAATAACTAGTAACGAAACTTGTTGGTCAAGAGCTCAATTCATCGAAATATTCGCTACGGAGTCTGTAATAATCGACTGTTCAGTCGAGAAACAAGGAAGTCCAATCCAGATAGCGATCATGTCACCAGTATGGACCATCGTTGGAAGACAGAAAATCCTATTAACAGGCGAGGATGGAGAAAGAAAAGCAGACGCTGAAGATTATAAGTATTTCCCACTCAAAAATCATCATGGTGAAGTTGGATGCCCAGGTGGTCCAAGTGGAAACTTTTTTGGCATTGGTGAACTATTCCACAACGGAAAAAATTTAACGATCCTGACAAAAGGTGGGAAAGGTGGACCTGGACAAAAAGGAGGAAAAGGTCAAAGAGGAATTAACGCTACCGAACCTACTAACCATCCAGATTATTTTCATGCGTTGTTTGCATGTTATAATTGTGACTTTTGTAATAGCATCGATTGCTTGAGACAGTTTTTGGATAGATATAATTATGAATACGAAATCGATATTGTAGAAAAACTTAAAGGAAGATTCTGGAAGAAGGTAGAGAATGGTACAAATGGTGGTTCTGGAGGAAATGGTGGAGTAGGTGGTTCCGGTGGCAGATTTGGACATATCGCCATAATTGAAATTGACGAAAAGTCTTCTATAACCGCAGTTTTTAAAGAAGGAGATGCTGGTGACAAAGGAAAAGGAGGGCCGGGTGGAGATCCAGCAATAAGATCTAAAATATTAGAAACTGTTTTTTCTGTATCCTATAGTATAATTGGTCCTGCGCCGTCTCAAGTTTATATCAATGATTCTCATCGTATTTATAATAATGGAACGACTGAACATGGGCCACTTGGCGAAGATGGCTTAAGTATCAAAAACCGTGTAGAAGCTATGGACGCCCAGGAAGCCATCCACTTCTCCATCTCCGAGCTGCAGACCCTGGAGCCCCAAAAAGCCCCAGATTCCGTGAACTTCCCTATCCTGGTAAAACCCTCGAAGCTCTACCAAAACGACGAGACCATGGCTGTCGAAGCCCTGAACCAGCTATCCTCTGGCTACTCCAACTTCGAGAAGTTGACCTGTGGAACCTGCGAGGAGACCTTCGACAAGAAGTCAGACCACGAAACCCACGTAGCCGCCTGTAGCCTAACCGGGGACGAGAAACTGCATTCCTGCAGCATTTGTGGCGCGGGATTTCGCACCAAGTCGAGCCTGCAGAACCACATGACCGAGTCGCACCAAAACCTCCCACGTATCCACACTTGTACCATCTGTGCAACCCAGTTCCAACGACCTTCCAGCCTCTCGAACCACATGAAAATCCATTCATACACCGCTGGTCGGGCTCTGAGCGCAGACACTGGAGAAACCACCGTCCATTGGGTAGGCGACGTCTACGACGAAGGCGTCCAGGTCGAGGAGAAGATGGACACTACGCAAGAATTCGGGGTACCAGTCGAGGAGTACGTCACGGTTCACTCCCTGGACAACAACAAGTCCGTGGTGAAGCTGGAGACGGTGCGCTACGAGAACTTTGAGGAGCTGAGGAAGATGAATCCCATTGAGTGCGGGTTCTGCGACAAGCAGTTCCAGGATCGTGAATTTTTGGCGGCGCACCAGCAAACGTGTGCCAAAAAAATGATGCAAGAGAATAATGAAAAGTGGGGTAAACATGTGTGCTCGGACTGTGGCAAAAAATTCACGACGAAGCAGAAGATGCACAGGCACCAATGGATTCACAGGAAGAAGACGCGGACTTGTGAGGTTTGTGGCACGCAATTTGAGAAGCAGGTTGAGCTTGACGAGCACCGACTCAGTGCTCATCCACGGGACTCGCCTTTCACGTGCACCGAGTGTGGGAAAACCTTCGTCTCGCGCCAAGGGCTTTGGGAGCATGGCAGGGTCGCTCACACTGAAACACCGACTCATTTTCAGTGCGAAGTCTGTGCCAAGACTTTTTCCTCGAGACAGGGTTTCCTGATCCACTCTCGTACCCACACTGGAGAACGACCCTACGGTTGCAAGTTCTGCTGGAAGGCCTTCAGAGACGGTGGAACTCTTCGAAAACACGAGCGTATTCATACAGGCGAGCGACCCCACGTTTGCCCCATCTGCAACCGAGCCTTTAACCAGAAAGTCGTGTTGCGAGAGCACGTGCGTTGGGTCCACGCGGGGCCCAAGAATGAGCCTGTAATCGAGGGCCCACCTTTTGCCTGTCCCATTTGTGAGACCCTGAGCCAAGACCGAGACGAGTTGTGCGCTCACATCGTCAAGCACTCAGACCAGATGATCGCTCAGACAAAAACTAAAGCGAGCGCCAACGCGCCAAAGGCCAAGAGCACGCGGAAGAAACCCAAGGCGGTGAAAACGACGAAGAACCAGATCAAGGAAGTAGGAGTGGAACTCGATGTAAATCCGGAAAACCCGGAAAACCCGGAAAACGCGGAAAACGAGACTGTGGAGTACGAGTTCCACATCGCCGTGGAAGATGATGCGGCTACAAGTTTGATGGTCCTGCCGACCGAAGAGGTGGTCGGCCCGAGTTACGAGAGTGAGAATCTCGAATTTTTGACCGTACCCGAGGGCGATGTTGCCCCCATCGTCGAGCGAGAAATTGAAAAAACCAAATCCTTGAAGTATAAAAAGGTCGTCCAGATCATCCATTGCGAGAAAGAAGAAGACAGCGACAGCGGAGAGGATATGTTCTGTGGCATTTGCGCAAAGGCCTTTTATGACAAAAACCTTTTAATGGATCACGTGAAGATCCATTTGTAA
- Protein Sequence
- MSRTILLLLFYIATTTLASNTTKLLLSLWDEQESDFHVNQPEKVVLMIGDTGTGKTTLTLLLTGASLQSEEDCEACKSYHISDKDGRIHSTLNSELTIPQRVVDEESKTVFYDCPGLKDSRSPEYNITTGYLIHHLLTRAESLKIVLIVDHSILKREESPSTIPEFLKNAVILFKNIDTYKNGIAMVVTKVVRTNRTVEEEPQLIAIEEIADFLQKVKSSATERISLKRETEDELNFNLEILKLLDALLQKSDDSENRYHRIGILRKTEETGSLENLPLIQSEKSNIKKIIKDNLQFVGQNKTVDFGFILSRTSRTIVDSLIYQILNTELFHDTLVMCQGLKEHYRNVLNEKKSFMDLNSTLFEGNNILSQINSTEILLFTQQLLDAASDMIIDSHIRDVRKHIKWMEFLLKVRKTECITPLRFRQQIDEVKTDLKFQYDVNVEQWVKHLLEKKMPPIITAISTEITQFYSELEENTTDIYELRDYLSMVHSKLSMVDIAKPQSLSTTIKEFRITVSKNSLLELDDLSEKMDPVSKVVMKYKTVMEASEAKFKDTVKHIQNDVLWYDYMITLYSNLSSPDRETFGRDIDVIRSLIHACDTSNTVDEFHFEQLSKFVPKNIEALTSLAHLHLNTRKKEILRIILSTLVQDPTISCQEGSHMTVTGPVIRISQITSNETCWSRAQFIEIFATESVIIDCSVEKQGSPIQIAIMSPVWTIVGRQKILLTGEDGERKADAEDYKYFPLKNHHGEVGCPGGPSGNFFGIGELFHNGKNLTILTKGGKGGPGQKGGKGQRGINATEPTNHPDYFHALFACYNCDFCNSIDCLRQFLDRYNYEYEIDIVEKLKGRFWKKVENGTNGGSGGNGGVGGSGGRFGHIAIIEIDEKSSITAVFKEGDAGDKGKGGPGGDPAIRSKILETVFSVSYSIIGPAPSQVYINDSHRIYNNGTTEHGPLGEDGLSIKNRVEAMDAQEAIHFSISELQTLEPQKAPDSVNFPILVKPSKLYQNDETMAVEALNQLSSGYSNFEKLTCGTCEETFDKKSDHETHVAACSLTGDEKLHSCSICGAGFRTKSSLQNHMTESHQNLPRIHTCTICATQFQRPSSLSNHMKIHSYTAGRALSADTGETTVHWVGDVYDEGVQVEEKMDTTQEFGVPVEEYVTVHSLDNNKSVVKLETVRYENFEELRKMNPIECGFCDKQFQDREFLAAHQQTCAKKMMQENNEKWGKHVCSDCGKKFTTKQKMHRHQWIHRKKTRTCEVCGTQFEKQVELDEHRLSAHPRDSPFTCTECGKTFVSRQGLWEHGRVAHTETPTHFQCEVCAKTFSSRQGFLIHSRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPICNRAFNQKVVLREHVRWVHAGPKNEPVIEGPPFACPICETLSQDRDELCAHIVKHSDQMIAQTKTKASANAPKAKSTRKKPKAVKTTKNQIKEVGVELDVNPENPENPENAENETVEYEFHIAVEDDAATSLMVLPTEEVVGPSYESENLEFLTVPEGDVAPIVEREIEKTKSLKYKKVVQIIHCEKEEDSDSGEDMFCGICAKAFYDKNLLMDHVKIHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -