Prob023279.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- -
- Assembly
- GCA_028476575.1
- Location
- CM052028.1:11199886-11206052[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.6e-06 0.0009 21.4 0.8 3 20 50 67 50 69 0.96 2 14 0.00065 0.23 13.8 1.9 1 21 85 105 85 111 0.97 3 14 1.3e-05 0.0046 19.1 0.5 1 22 112 133 112 133 0.93 4 14 0.00017 0.061 15.6 0.3 1 21 176 196 176 197 0.96 5 14 1.1e-05 0.0037 19.4 2.0 3 22 205 224 203 224 0.93 6 14 0.41 1.5e+02 5.0 5.2 4 21 233 250 233 251 0.92 7 14 0.021 7.4 9.0 1.1 1 21 267 287 267 288 0.94 8 14 0.0078 2.7 10.4 4.8 3 21 296 314 294 315 0.93 9 14 0.0001 0.036 16.3 6.2 2 23 322 343 322 343 0.97 10 14 0.018 6.5 9.2 2.7 1 21 358 378 358 384 0.97 11 14 4.7e-06 0.0016 20.5 4.6 1 21 385 405 385 406 0.95 12 14 0.00022 0.076 15.3 0.2 3 21 451 469 451 470 0.96 13 14 0.00041 0.14 14.4 1.6 1 21 486 506 486 507 0.96 14 14 0.00028 0.099 14.9 1.0 3 21 515 533 513 534 0.92
Sequence Information
- Coding Sequence
- ATGGATGCCAGTACTGCGGAAAAACTTTCAAGTGGCTTAAGACCTTGGCCAACCATGAGCGTTATTATTGCTCCTCGAATCCCAACATTGCCCAAAAAACGAGTGGATCCTTTGTGTGTCAATCAGGACCCATTGAAATGGAATGGATGCCAGTACTGCGGAAAAACTTACAAGCGGCCTTCTAACTTGGTCCAACACATGACACATTATTGCAACTTGAATCCCAACATTGTCTACAAAGCACATCGACCTTTTGTGTGTTCCTCGTGCGGCGCTTCTTATGTTAAAAAAAGGAACTTGACCTATCATATGAAACACGATTGCGGACGTTCCCATTTCTGTCCACAGTGCGGAAAAGTTTTTAATCAACTCGGTGGCCTTCGCACTCATCTCAAAAAAGACACGCTCAACTGGAATAGATGCAAGTACTACGGAAAAATCTACCAGCACCATCATCACATGACAACACACTTGAAATATCGTTGTCCCTGGAATCCCAGCATTACTTCCATAACACATCGACCCTTTGTGTGTCCCTCGTGCAAAGCTTCTTATTCAAGGAAAAATGACTTGCTCAATCACTTAAGAAACGATTGCGGACGTTCCCATTTATGCCCACATTGCGGGAAAATTTTCATGCAACGCAATAGCCTTCGCAGACATATCAAAAAAGAGACGTTCAATGGGAATAGATTCAAGTACTGCGGAAAAGTCTGCCAGCACCATCATCACATGACAACACACATGAGCAGTTATTGTTCGTGGAATCCTAACATTACTTTCAAAAGACAGAGACCTTTTGTGTGTTCCTCGTGCGGCGCTTCGTATTTTGAAAAAGGAAACTTGACCTATCATAAGAAACACAATTGCGGACGTTCCCATTTATGCCCACATTGCGGAAAAGCTTTTCATCAACTCTGTAGGCTCCGCCAACATCTTAAAGAAGACACGTTCAATGGAAATAGATGCGAGTACTGCGGAAAAATCTACAAGCACATGCATCATTTGTCAGCACACATGAAATACCATTGTCCCTGGAATCCGAACATTACTTTCGAGAGAGATCGACCCTTTGTGTGTTCCTCATGCGGATCTTCGTATTTTGAAAAAAAAAACTTGACCTATCATATGAAACACGATTGCGGACGTTCCCATTCATGCCCACATTGCGGAAAAGCTTTTCGTCAACTCTCTACCCTCCGCCACCATCTCAAACATAGAAAACGTTCGTTTTCGCTGCCCTCAACCTCGCGTTTTTACCCCACGACGTACAACATGTTATGCGTCCTCGTCCTCAGAATAGCAATATCGCGCCGCAGTACACAATGTCAATCTTTCGGATGGAATGGATGCAAGTACTGTGGAAAAACTTACGGGCAGCCAGGCAACGTAGTTCACCACATGATGCAATGTTGCAACTTGAATCCTAACCTTCCCCTCAAAACATATCAACCATTTTCCTGTTCAACGTGCGGCTCTTCGTATTCGAAAAAAAATCAATTGACCTATCATATGAAACACGATTGCGGACGTTCCCATTTATGCCCAAACTGCGGAAAAGTTTTCAATCAAATCAGAGGCCTTCACAATCATCTCAAAAAATATTGCAAAAATTTAGAAAAAGCCGTGGAGAAATAG
- Protein Sequence
- MDASTAEKLSSGLRPWPTMSVIIAPRIPTLPKKRVDPLCVNQDPLKWNGCQYCGKTYKRPSNLVQHMTHYCNLNPNIVYKAHRPFVCSSCGASYVKKRNLTYHMKHDCGRSHFCPQCGKVFNQLGGLRTHLKKDTLNWNRCKYYGKIYQHHHHMTTHLKYRCPWNPSITSITHRPFVCPSCKASYSRKNDLLNHLRNDCGRSHLCPHCGKIFMQRNSLRRHIKKETFNGNRFKYCGKVCQHHHHMTTHMSSYCSWNPNITFKRQRPFVCSSCGASYFEKGNLTYHKKHNCGRSHLCPHCGKAFHQLCRLRQHLKEDTFNGNRCEYCGKIYKHMHHLSAHMKYHCPWNPNITFERDRPFVCSSCGSSYFEKKNLTYHMKHDCGRSHSCPHCGKAFRQLSTLRHHLKHRKRSFSLPSTSRFYPTTYNMLCVLVLRIAISRRSTQCQSFGWNGCKYCGKTYGQPGNVVHHMMQCCNLNPNLPLKTYQPFSCSTCGSSYSKKNQLTYHMKHDCGRSHLCPNCGKVFNQIRGLHNHLKKYCKNLEKAVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -