Basic Information

Insect: Platygaster robiniae
Gene Symbol: ttm50
Assembly: GCA_028476575.1
Location: CM052020.1:50561737-50573451[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.3e-06 0.0015 20.7 2.9 1 23 305 328 305 328 0.97

2 15 2.7e-05 0.0094 18.2 3.8 1 23 334 357 334 357 0.97

3 15 1.1e-05 0.004 19.3 1.1 2 23 363 384 362 384 0.96

4 15 6.4e-06 0.0022 20.1 0.6 1 23 390 412 390 412 0.98

5 15 0.0018 0.64 12.4 0.1 1 23 424 446 424 446 0.95

6 15 8.8e-05 0.031 16.5 0.7 1 23 452 476 452 476 0.96

7 15 0.01 3.6 10.0 0.1 1 23 482 504 482 504 0.94

8 15 0.00095 0.33 13.3 5.5 1 23 510 532 510 532 0.97

9 15 5.9e-06 0.0021 20.2 0.7 1 23 538 560 538 560 0.98

10 15 0.0013 0.46 12.9 0.4 2 23 567 588 567 588 0.96

11 15 0.01 3.5 10.1 3.6 3 22 596 615 595 615 0.97

12 15 0.12 42 6.7 3.6 1 23 623 645 623 645 0.97

13 15 0.018 6.4 9.2 0.3 3 22 653 672 651 672 0.94

14 15 0.042 15 8.1 0.1 2 23 772 793 771 793 0.97

15 15 0.0013 0.46 12.8 3.3 1 23 800 823 800 823 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.3e-06	0.0015	20.7	2.9	1	23	305	328	305	328	0.97
2	15	2.7e-05	0.0094	18.2	3.8	1	23	334	357	334	357	0.97
3	15	1.1e-05	0.004	19.3	1.1	2	23	363	384	362	384	0.96
4	15	6.4e-06	0.0022	20.1	0.6	1	23	390	412	390	412	0.98
5	15	0.0018	0.64	12.4	0.1	1	23	424	446	424	446	0.95
6	15	8.8e-05	0.031	16.5	0.7	1	23	452	476	452	476	0.96
7	15	0.01	3.6	10.0	0.1	1	23	482	504	482	504	0.94
8	15	0.00095	0.33	13.3	5.5	1	23	510	532	510	532	0.97
9	15	5.9e-06	0.0021	20.2	0.7	1	23	538	560	538	560	0.98
10	15	0.0013	0.46	12.9	0.4	2	23	567	588	567	588	0.96
11	15	0.01	3.5	10.1	3.6	3	22	596	615	595	615	0.97
12	15	0.12	42	6.7	3.6	1	23	623	645	623	645	0.97
13	15	0.018	6.4	9.2	0.3	3	22	653	672	651	672	0.94
14	15	0.042	15	8.1	0.1	2	23	772	793	771	793	0.97
15	15	0.0013	0.46	12.8	3.3	1	23	800	823	800	823	0.96

Sequence Information

Coding Sequence: ATGGACAAAAATAATGAAGAGAACATGAACAAAATGAGAATGGATGTCTCCGAATGTTGCGTGACTACAATAGGGGAACCTATAGAAACATCGCTTTATACTGAAATGGTCAACGTTCATTGGGTAGCTGAAAACGTCTCAATCCAAAATGAATTGTCCGAAAATGACCTTCCCACGGATGACATGGTCAACAATAGTTTTTTGAATAAAAGTAATTCAACTGAAAATGATATTACCAAGAAGGATGTCATGGCCAGCAATGATGGTTCAACTGAAAATAATACAGCTGAAAATGATATCATTAAGGATGAAATGGCCAGCAATGATTATTCAACTGAAAATTACATTTCTAAGGATGATATAGTCAAAAATGATTGTTCAGCTGAAAATGACATTTCTAAGGATGAAATTGTCAAAAATGATTGTGCAACTGAAAATGACGTTGCTGAAGATGATATAACCAACAATGATTGTTTGGCTGACAGTAATTCAACCAAAAATACCTCTATCAATGTGAAAAAAAGAAAAAGATATAAGCAACGATCAGGAGTACCTTTGAGTGAGAAGGATGCACTTGCACTTGAGCATGTCTTCAAGCTCAACCCATATCCTTCTTCGTGGGATGAAATAGCATTGAAGCTCGACCTTTCCAAGAGACAAGTCTCGATATGGTTCCAAGACCGCCATCTCCAAAATCACAAAAAAAAGCGAGCCCAGAAAAAAGCTGAAACAGCTGATCCGAATCACACATCAAATGCGGAAAACAAGCCACGCAAATCAAAACCGGAAGAACCGATCAGGTCGTTCCATTGCAGCGATTGCCAAGAAATGTTTTGGTGTCTGCGACGTTTCGAGCATCACACAAAAACCCATCCATCGGAGGAAAACAAACAACTGATCGAAAGGAACAAGTTCTACTGTGACGACTGCGGGAAACAATTTTACCAAAAACACCTGTTGAGAGTTCATATCCAGTCGCGGCATGTGAATGATACCAAGTTCCCTTGTTCCTACTGTGGAAAGTTTTACCATCGCAGAAGCGATTACACAAGGCATATACTAATGAAGCACCCTGAGAAAGCTCTGAATTGCGATATTTGCGGCCAAGCTTTCACTCACAAAAAATACCTTCAGGAACATATAGACAAACACCCAGGGATAAAAAAATATCGTTGCAATATTTGCGGTATAAATTTTATGAATGAGTCGAATCTTAAGTCGCACAGTTTGACTCACAATCCCGCAGAGAAAGCCAAGCCAAGGAAAATGTATCCTTGCCCAATTTGCCAGAAACCTTACGTGTCGATCAGTGGCGTGAAGAAGCACGTGTTCCTGCATTCAGCGGAGAAGAAATTCAAGTGCGAGGTTCCAGGCTGTGGAGCCAAGTTTCATCAGAAAGGCAATCTTACGTCGCACATGATATTTCACAGTGGGGAGAAGAAATATCTGTGTAGCATCTGCGGGAAGAAATTCTGGAAGCCAAATGCACTCGCAGAACATTCTATGTCGCACAGTCAAGAGAAGAACCACGAATGCGACATTTGCGGCAAATTCTTCCATATGGCTTCTGCTCTCAGGCATCATAAGTACACACACTCCGACAAAAAGCCCCACAAATGCCCCATTTGCGATAAAGGATTCAAGCTTAAGGCACAATTAGTAGTACACGAAAAAACACACATTACCGAAAAGAAAGAAGAATGTATGGTGTGTGGCAAAAAATTCCGTGATTTGAACGCCGTCAAGATTCACAGTCAGACGCATTCGTTCGATCTACGTTTTTGGTGCGTGAAATGTGACAGGTATTTTCGATACAAATGCAATTTCAAAACGCATCTTCGCACTTGTGGCTTCCAAAAAGAAAGCTACTTTTGCTCGGCCTGCGATCAGTTTTACACTGACTTCAATCTTTTCGTCAAACACATGTGTCTCCACACAAAAGCTACCGAATCGATTTGCCCTAAATGCGGTGAAAAGTTCCTAGATTCTCATTTGTACAACCAACATTTGATGACTTGCGACTGCAAAACAGATGTTCAGTTTGAGACCCAACAAAATGAAAGTGTTCTGGTTGAAAGGAAAGTTAATCCTGCCTCCACGATGGCAGAAGAACTTATTATTCCTCATGTGATGTCGACAACCGAGTCCCCAAAAACCATGGTCAAATTGGAAAAAACCAGGAAATACAAGAACAGTGAGAACCACGCTCTCAAAATTGAGGACAGTGATTCTGACGAAAATGAGGACGAAGAAAGCGCCGAGGAATCTGAAAACGATTATTCAAATGAAGAATACGAAGATCGGAAATTGCTGAAGTGCTCGGAATGTGACAACTTTTACGAACTCGAAGATGACTTGTTGGAACACATTTTTACTCATGCGATGCAAGATGGGGAGTATTTCTGTAAATCATGCAACCAAAAGTTTCGACGCCAAGCCAGTTTTGTCAATCATTGGAAGAGAAATCATTCGGTTTTGAGATGCAGAATAGCAAGTCATTTATCGAATTTCTACTCCACGGACGTGAAAAAATCGATTTTGCCAAATCTTGTTGGGGAACAACAAAGTCAAGAAGATGAGAACAAAATAAATGAAGAGGAAAAAGCGAACCAATGGAAAAGGATGAAACGGAGTTTTATTTTTTTCGGAATCACTTTGACTTTAGGAGGCTCAGCACTTATTTATATACTCTCCAGCCCAAATTATGATGAAAATGGGAAAATAATAGAGGATGAATTTTCGAATTTGCCTTACTTTGAACAGAGGCTTAAACGACTTCTCAATGAGTTGAATTATTATAAAAAGATTGTACAGGAACCGAGTAGAGAAAAACTGCTTCCAGATCCTTTGAAATACCCATACATACAACCTCCTTACACGGTAGTGTTAGAACTGAAAGATGTTTTGGTACACCCTGACTGGACGTATCAAACTGGATGGAGGTTCAAAAAAAGACCAGGAGTGGAGAAATTCCTTGAAGCCTTGCCATTTTCTCAATTCGAGTTAGTTATCTACACCGCAGAACAAGGAGGGACTGTTTTTCCCATTGTTGACGCGCTGGACCCGCAAGGTGTGATCGCCTATAGGCTAGTCAGAGACGGGACTCGTTTCATAAATGGGCATCATGTCAAAGATTTGGACTCGTTGAATAGGGATTTGAGCAAAGTTATCGTCGTGGACTGGGATGACCAAAGCGTCCAACTCCATAAGGAAAACCTGCTGAAAATTCCTAGATGGACTGGCAATGACGACGATCTGGCATTGTTGGATCTTGCTGCTTTTCTTCAAACGATATTTGCAACGAAAGTAGAAGACGTTAGGGAGGTACTCGATTATTATAAACAATTCGACAATCCTCTTCAAGCATTTAGGGAAAATCAGCAAAAATTATTGACGCAGATGCAAGAGGAACAAGAAATGCAAGCGAAACTACAGCAACAAAGCAAAGTTACAGGGACTAATTGGCGACCATCGTTTTTGAATCGTTGA
Protein Sequence: MDKNNEENMNKMRMDVSECCVTTIGEPIETSLYTEMVNVHWVAENVSIQNELSENDLPTDDMVNNSFLNKSNSTENDITKKDVMASNDGSTENNTAENDIIKDEMASNDYSTENYISKDDIVKNDCSAENDISKDEIVKNDCATENDVAEDDITNNDCLADSNSTKNTSINVKKRKRYKQRSGVPLSEKDALALEHVFKLNPYPSSWDEIALKLDLSKRQVSIWFQDRHLQNHKKKRAQKKAETADPNHTSNAENKPRKSKPEEPIRSFHCSDCQEMFWCLRRFEHHTKTHPSEENKQLIERNKFYCDDCGKQFYQKHLLRVHIQSRHVNDTKFPCSYCGKFYHRRSDYTRHILMKHPEKALNCDICGQAFTHKKYLQEHIDKHPGIKKYRCNICGINFMNESNLKSHSLTHNPAEKAKPRKMYPCPICQKPYVSISGVKKHVFLHSAEKKFKCEVPGCGAKFHQKGNLTSHMIFHSGEKKYLCSICGKKFWKPNALAEHSMSHSQEKNHECDICGKFFHMASALRHHKYTHSDKKPHKCPICDKGFKLKAQLVVHEKTHITEKKEECMVCGKKFRDLNAVKIHSQTHSFDLRFWCVKCDRYFRYKCNFKTHLRTCGFQKESYFCSACDQFYTDFNLFVKHMCLHTKATESICPKCGEKFLDSHLYNQHLMTCDCKTDVQFETQQNESVLVERKVNPASTMAEELIIPHVMSTTESPKTMVKLEKTRKYKNSENHALKIEDSDSDENEDEESAEESENDYSNEEYEDRKLLKCSECDNFYELEDDLLEHIFTHAMQDGEYFCKSCNQKFRRQASFVNHWKRNHSVLRCRIASHLSNFYSTDVKKSILPNLVGEQQSQEDENKINEEEKANQWKRMKRSFIFFGITLTLGGSALIYILSSPNYDENGKIIEDEFSNLPYFEQRLKRLLNELNYYKKIVQEPSREKLLPDPLKYPYIQPPYTVVLELKDVLVHPDWTYQTGWRFKKRPGVEKFLEALPFSQFELVIYTAEQGGTVFPIVDALDPQGVIAYRLVRDGTRFINGHHVKDLDSLNRDLSKVIVVDWDDQSVQLHKENLLKIPRWTGNDDDLALLDLAAFLQTIFATKVEDVREVLDYYKQFDNPLQAFRENQQKLLTQMQEEQEMQAKLQQQSKVTGTNWRPSFLNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01214677;
90% Identity: iTF_01214677;
80% Identity: iTF_01214677;