Prob052688.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- Prdm15
- Assembly
- GCA_028476575.1
- Location
- CM052023.1:28923236-28931376[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.4e-05 0.005 19.0 1.4 1 23 353 375 353 375 0.98 2 11 1.1e-05 0.0037 19.4 0.4 2 23 380 401 379 401 0.98 3 11 6.7e-05 0.023 16.9 3.9 1 23 435 457 435 457 0.96 4 11 2e-05 0.0069 18.6 3.8 1 23 462 484 462 484 0.97 5 11 0.00082 0.29 13.5 3.0 1 23 529 551 529 551 0.98 6 11 0.00073 0.26 13.7 0.9 2 23 559 580 558 580 0.97 7 11 2.1e-06 0.00075 21.6 2.6 1 23 591 613 591 613 0.96 8 11 5.2e-05 0.018 17.3 1.0 1 23 619 641 619 641 0.98 9 11 0.00013 0.047 16.0 0.7 1 23 647 669 647 669 0.98 10 11 3.9e-06 0.0014 20.8 2.0 1 23 675 697 675 697 0.96 11 11 0.00056 0.2 14.0 0.2 1 22 703 724 703 724 0.95
Sequence Information
- Coding Sequence
- ATGGCAAATGAAGTATTGAAAGTCGACCAATGGCTGGAGAAAATGACACTCAGCAGGGGAAAGGGGGTCCTATCGAACCCACTGGATCCTAAGGAGCCTGCCTTTCACATCGCCGATTGTCATTTATCAACAGCCTGCGTGTTGGCCTGGAATACTTCATTTGCCACTGTCGAAATGTGTTTGGAAATGCTTCTTTCTCTTAGACCATATAGCATATGGACTTCTACTACCTATTACATTGCATCATGTTCTACGACGGACGATGTCGCATCTTGTTCTGCAACGAACGTCATTGCATCGTGTTCTACAACAGACGTCATAACTGAAGATTATTTTCAATTGCCATTGAACATTGATCGAGTATGTCGGATATGTCTGACGGAAAATGAAAACCTCGCTTCCATATTTGACGAAAGTCGAGATGACAACACCGCAGAGTTGCCAAAGAAAATAAGGCTTTGTGGGACGATAAACGTTGATGAAGAAGACGGCCTGCCCTCGCTCATTTGCGAAGTTTGCATTTACAAAGCGAACCTTGCGTACGACTTTCGACAGACTTGCCTTCATTCTGATACAAAGCTTCGATTGTTATACAATAAACCTTCCAGATGCAGTATTACGGAAAGCAGCACACAAACGAACTCACAAACCAGGATAATCTTGACAAAAGGCACTCAAAACGGTTCATCACAAAACATTTACTTTGTGAAAGAAGAGCAGCCACTGCAGAACATGAACGCTCAAATAACTGAAGTTTACTCCGAAAACATTGTTTCGGAGTTTAAGGAGGAGGATGAAAAATTGTACGTTTGTAACGTTGGTTTGAGCGAAATGCCTAAAAATATTCAAATCGAGAATGTGGTGGCAAGCGCGGAAATTGTGACAGAAGACAAGCAAGGGATGATGATTTACTCAGACAATGGGGAAAAATATCTGTTGCCTCCAAAACGTTTTTCAACTAGGAAAACGAAGTTGCTGCAAACACAGGTTGAATATAGCGACGACGAGGACTTTTTCGATCAGGGTAACGACAATTTCGATCCTGAGGAAAAGCGCTTCCGGTGTAATTTTTGCCCAAAACAGTACACCACGCAAAAAGGTCTCAAGAAACACGTGATCGTGCATGATAAGAGAATCCAATGCAAGATATGCTCCGCGGCATTTCAATCTCAGGAGAATCTGGAGACACATCAAAAAACGCACTCAGTGAAAGTTTCTGAGGAAAATAGTTTAGACAATCACGGGACGAACATTGTTGTGTCGAGATGTAATAACGAAGAGGTGGAGGGAGAGAAGCAGCAGCACAGATGTGAAGTGTGTGGTCAGTCTTGTTCGACGTTGAAAAATTTAAAGCGCCACTCACTGATCCACGGGGACAAAAAGTACTCGTGCACTGTGTGCCAGAAATGTTTTTTCAGGCCGGACACGCTCAAGAAGCATGCCGAGAAACACGGCCATGGTTTGCTGGATAACATCGAGGACGACAACAAGCTCTACGACTCTGATGAAGATTCTTTCCAAAACATGCCGGAATCGCCAACGACCCGCAGAGAAGTAACTAACGAAGAGAGCTTCACTGGCGAGTTCAAGTGCCAGCACTGCAACAAGGTTATGGGTACAAAGAAAGGTCTACGTCGACATGTGTCGATGCACAAGCCCAAAGCAGAGCCAGTGAGCTGTGAAATATGTCGAAAAGTGTGCGCAAGCCAAGCGAGGTTAGTGCTGCATCAGAAGACCCACAACAAACCTAAGGAGCGACCTCCGCGTGAATATCTTTGCCACATGTGCAGCAAAGTCTACCCCAGTAACTCGTCTTTAACGTATCACATGAGAACACACACCGGGGTCAAACCCCACGTCTGCAAGATATGCAACAGTGGCTTCACGACGACTACCAGTCTTGCAAACCACATACGAATCCACACCGGGGACAAACCCTTTGTCTGCCACGTTTGCAGCGCCGCTTTTGCCGTTAGTTCTGCCTTCAGACGTCACTTGACGAGACATACTGGTGAAGCGAACTATCTTTGCAAAACCTGCGGAAAAGCGTTCAAGAGGTTAAGCACCCTGAAAGAACATACGTACACGCATTCAGGAGAAAAGCCTTATGTTTGCAAAGCATGTGGCGCTGCCTATAGCCACAGCGGAAGTCTCTTTGCTCACCAAAAGAGATGTCGGACGCAGTTTACGGATGTGATTGTGGAAGAGCATCGTTCAACGTTGCCCCAAATTCAGGTCGTCGACAACATGCAAACCGCAGTGGCCATGATTGGCCAAATGTTTTGA
- Protein Sequence
- MANEVLKVDQWLEKMTLSRGKGVLSNPLDPKEPAFHIADCHLSTACVLAWNTSFATVEMCLEMLLSLRPYSIWTSTTYYIASCSTTDDVASCSATNVIASCSTTDVITEDYFQLPLNIDRVCRICLTENENLASIFDESRDDNTAELPKKIRLCGTINVDEEDGLPSLICEVCIYKANLAYDFRQTCLHSDTKLRLLYNKPSRCSITESSTQTNSQTRIILTKGTQNGSSQNIYFVKEEQPLQNMNAQITEVYSENIVSEFKEEDEKLYVCNVGLSEMPKNIQIENVVASAEIVTEDKQGMMIYSDNGEKYLLPPKRFSTRKTKLLQTQVEYSDDEDFFDQGNDNFDPEEKRFRCNFCPKQYTTQKGLKKHVIVHDKRIQCKICSAAFQSQENLETHQKTHSVKVSEENSLDNHGTNIVVSRCNNEEVEGEKQQHRCEVCGQSCSTLKNLKRHSLIHGDKKYSCTVCQKCFFRPDTLKKHAEKHGHGLLDNIEDDNKLYDSDEDSFQNMPESPTTRREVTNEESFTGEFKCQHCNKVMGTKKGLRRHVSMHKPKAEPVSCEICRKVCASQARLVLHQKTHNKPKERPPREYLCHMCSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKACGAAYSHSGSLFAHQKRCRTQFTDVIVEEHRSTLPQIQVVDNMQTAVAMIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01214238;
- 90% Identity
- -
- 80% Identity
- -