Prob034124.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- -
- Assembly
- GCA_028476575.1
- Location
- CM052021.1:389355-393357[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.8e-05 0.027 16.7 1.6 2 23 84 105 83 105 0.95 2 17 0.042 15 8.1 0.4 1 12 110 121 110 123 0.91 3 17 1.8e-05 0.0063 18.7 1.5 1 23 135 157 135 157 0.98 4 17 0.29 1e+02 5.4 4.9 1 23 163 186 163 186 0.95 5 17 0.00011 0.038 16.3 0.1 1 23 205 228 205 228 0.93 6 17 4.8e-07 0.00017 23.7 1.5 1 23 247 269 247 269 0.98 7 17 0.00022 0.076 15.3 0.7 1 23 281 304 281 304 0.95 8 17 0.00035 0.12 14.6 1.1 1 23 322 344 322 344 0.97 9 17 0.002 0.71 12.3 0.9 3 23 358 379 357 379 0.95 10 17 6.4e-05 0.023 17.0 0.3 3 23 399 419 398 419 0.98 11 17 0.02 7.1 9.1 1.2 1 23 432 455 432 455 0.95 12 17 0.00011 0.04 16.2 0.9 1 23 474 496 474 496 0.97 13 17 0.0023 0.8 12.1 4.9 1 23 508 531 508 531 0.98 14 17 0.00021 0.072 15.4 0.2 1 23 550 572 550 572 0.98 15 17 0.029 10 8.6 0.3 3 23 710 730 708 730 0.95 16 17 0.039 14 8.2 1.3 1 19 736 754 736 757 0.83 17 17 0.0093 3.3 10.2 3.6 1 23 764 787 764 787 0.97
Sequence Information
- Coding Sequence
- ATGGCCTTTTTGTCAGGAGTTTTGATGTCCCTAACGCCACAACAGCAACAAGTTCCTCTTGGATATTTTTATCGAATCGATACCCCAAGTGCCTCGGAAAATGTGCGAATTTCCCCTCGAACCCTGGAAGTTCCCAACCCCAAGGAAAATATGCGATACCCCCCTCCACTCCTGCCAATCCGAAAATCCAAGGAAAATGGAGAAAATTCGAACGCCCCTCAAGTTGCGACTGAAAAAGAAGCCCCCTTGCAATGTGAAATTTGCAACAAGACTTTCAAAAAATTGTCCACATACAACAATCACAAGATCCTTCACAAAGTCAATCGCTTTCAATGCGAAATTTGCAAAAAAACATTCATTGACATTGACAGACACGTGGCAAGTCACAATCGGCCTAAATTATTCCAGTGTCAAGTTTGCAACAAGTCGTTCAGCTTTTTGGCGAGATTGAAAACCCACATGCTCCTTCACAATTGGGAGAAGCCCCATAAATGCGAATCTTGTCATGCGTGTTTCGAGACGGATCTCGCATTGAGAAGCCACCAAAAAGATCtccacccaAGACACCAGCTCGTTCATGTTTCTGAAAGAACCGTCAATTCTGAGCAGTTCTATAAATGTGGCATTTGCGAAGAATCGTTCAAGGACCTTGAATTATTGAAAGAACACGTTGAAGAATTTCATCCTTCACCTCCCAATATACCTAGAGCAAAACCAGTCCCAGACGTGGACCAATCCTTTCCATGTGACATTTGTGGAAAGTCATTCACGTTCTCTAACACTCTGAGGAGACACAAGCTCACTCACAATTCTGAAAAAACTCGCAAGCCTAAAAAAGTCTTTAAATGTGATATTTGCGAAGAATCATTCGAGAATCGTAAATTATTGAAGGGACATAAGAAGGCTTCTCATCCTCGTCCTAAGAAACAAAAAAAAAAATCAGTCCTAAAGACGAAGCAATCCTTCCCATGCGAAATTTGTGGAATGACATACAAGTTCATTACCTATTTGAATAAACACAAGCTCAAACACAATTCTGAAAAAAACTGCAAGCCTGAGAATGAAAATGACTGCGGATTTTGCAAAGAATCGTTCAGGAGCCATGGATTATTGATGGAGCATATTAAGGAATTGCACCCTACTTCTGAGAAACCAAAAACAAAATCAGTCCAAAAGACGAAAAAACCTTCTCTATGTGAAATATGTGGAAAGTCATACAACTCGACTGCCTATTTGAATAAACACAAGCTCATACACAATAATTCTGAAAAAAACTGCAAGCCTGAGAAATTACATGAATGTGGATTTTGCAAAGAATCGTTCCAGATCCTTGAGTTATTAATGAAACATATTAAGGAATTTCACCCTTCTTCTCTTGAGAAACCTGAAACAGAATCAGTCCCAAATATGGACAAATCTTTCCCATGTGAAATTTGTGACAAGTCATACAAGTCCATGGTCGATTTGCATACACACAAGCTCATTCACAACTCTGAAAAAACCTGCAAACCTGAGAAGTCATATAAATGCGGATTTTGCAAAGAATTTTTCAAGGACCATGAATTAATGATGCAACATATGAAGAAATTCCACCCCACTCATCCTGAGAAACCTGAAACGAAATCAGTCCCACATATGATCAAATACTATGTATGTGAAATTTGTGAAAAGCCATACAAGTTTGTTGCCGAATTGAAGAAACACAAGCTCATTCACACTTTACAACAGACCTGCAATCCCGAGAAATTCTATGAATGTCGATTTTGCAAAATATTGTTCCAGAGCCTTGAATTATCGATGGAACATGTTAAAAAATTTCACCCTGCTCAGTCGAAGAAGCCTGAAACAAAATCAGTCCCAAATGGAAACCAGCCTGAAGTTAGCCTTTCCATATTCAGACTTGTTGAATCAAAAGAGTCGAAGAGAAGGAAAAGTGAAAATTCTGATAATAAAGTCACCACGCCCAATCCTGAAATCTCAAATGACACTCCTCCCATTGACAAACTTGACCATCCTCAAGTTGGGCACACAAAGTCCACGCCTCGAGTATCTCAAGCCCAGTCCAAGGAAAACATGACGTCGTCGTCCAATCCCCCGAGCAGCAACTCCACCAGTCGAGTCCACCTATGCGAAGTTTGCAACCAAGGTTTCATTTCCTTCGCAGACTACGAGCTTCATCTCACTGTTCACTATGGCAAAAATCCTTACCAGTGCGAAAATTGCAACAGGTGTTTTAGTATGCTGAAAATTCTGCAACTACACAAGATCAAATGCACTGTCAAATTGCCGTTCAAGTGCGAATTTTGCCATCTGCGTTTCAAAACCGACGGAGGTTGGAGGAATCATAGGCGCCTTCGACACCTTGGGATAGATTATCAAAACGAAAAATCTTGGTGCATGGTTCATGGAGGTTGGGTTATTCGCCAGAATCACCCTTGTTTTCTTAGTGAACGATACCGTTATCCAAGAACAAAAAGGAAAAAATATGCTAGTAGAAAAAAAAATGTGTATATTCTTCCTAAGCCTGCAGTACCTGAAATACCTACAAATAAAGATGACGTGGATGAAATTGAAATTGAAGAGTTCAAGATGCTACCCAAAGAGGAAGTTGAGATACAGACTGAAAGTGTGGATCCTCCCATTCCATGCGAGGAACACGTCTCCAATACCATAAGCGAAATCGAAATTGAAGAATTCAAGATGCCACCTAAAGATGAAATTGAGACAACATCTGAAAGTGTGAATCCTTCCATTCCGTCTGTGGAAAACAAAAAAACTAACCAAGAAAGCAAGATAGAAAACAATCAGAAAGTTATCGATGAAATGTCGAGTGTAATCGACGAGTTGACACCCGTTCAGAGACGAATTTGCTACATTTGTATGGACCACAAAAACAATGCTGGCATCGGGTTCCTGGAATTGATTGACCGACTTGGAACATATTTCATTTTCGAAAATCAAGATTATTTGGCTCAAAATGTCATGCAAATGACAAAAAACGTTGTTGGCAGTCACAATTTGACTTTGTTGATACCCAGCGAACAAATAATAATGAGGCGAAACTTTGGGGCTGACATTTCTTGTTTCAAGAATATTTTCATCAAAGTTAATTCCTTGGCTGATTCCATTTTAGAAAAAATCAAACCTGAGGTAGAAATTATCGACCCGGATTCTTGA
- Protein Sequence
- MAFLSGVLMSLTPQQQQVPLGYFYRIDTPSASENVRISPRTLEVPNPKENMRYPPPLLPIRKSKENGENSNAPQVATEKEAPLQCEICNKTFKKLSTYNNHKILHKVNRFQCEICKKTFIDIDRHVASHNRPKLFQCQVCNKSFSFLARLKTHMLLHNWEKPHKCESCHACFETDLALRSHQKDLHPRHQLVHVSERTVNSEQFYKCGICEESFKDLELLKEHVEEFHPSPPNIPRAKPVPDVDQSFPCDICGKSFTFSNTLRRHKLTHNSEKTRKPKKVFKCDICEESFENRKLLKGHKKASHPRPKKQKKKSVLKTKQSFPCEICGMTYKFITYLNKHKLKHNSEKNCKPENENDCGFCKESFRSHGLLMEHIKELHPTSEKPKTKSVQKTKKPSLCEICGKSYNSTAYLNKHKLIHNNSEKNCKPEKLHECGFCKESFQILELLMKHIKEFHPSSLEKPETESVPNMDKSFPCEICDKSYKSMVDLHTHKLIHNSEKTCKPEKSYKCGFCKEFFKDHELMMQHMKKFHPTHPEKPETKSVPHMIKYYVCEICEKPYKFVAELKKHKLIHTLQQTCNPEKFYECRFCKILFQSLELSMEHVKKFHPAQSKKPETKSVPNGNQPEVSLSIFRLVESKESKRRKSENSDNKVTTPNPEISNDTPPIDKLDHPQVGHTKSTPRVSQAQSKENMTSSSNPPSSNSTSRVHLCEVCNQGFISFADYELHLTVHYGKNPYQCENCNRCFSMLKILQLHKIKCTVKLPFKCEFCHLRFKTDGGWRNHRRLRHLGIDYQNEKSWCMVHGGWVIRQNHPCFLSERYRYPRTKRKKYASRKKNVYILPKPAVPEIPTNKDDVDEIEIEEFKMLPKEEVEIQTESVDPPIPCEEHVSNTISEIEIEEFKMPPKDEIETTSESVNPSIPSVENKKTNQESKIENNQKVIDEMSSVIDELTPVQRRICYICMDHKNNAGIGFLELIDRLGTYFIFENQDYLAQNVMQMTKNVVGSHNLTLLIPSEQIIMRRNFGADISCFKNIFIKVNSLADSILEKIKPEVEIIDPDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -