Prob023286.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- -
- Assembly
- GCA_028476575.1
- Location
- CM052028.1:11278131-11286774[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.1 7.2e+02 2.8 0.1 9 21 2 14 1 15 0.87 2 18 3e-05 0.011 18.0 0.1 2 21 44 63 44 64 0.95 3 18 0.0078 2.7 10.4 0.1 2 21 81 100 80 101 0.93 4 18 1.7e-07 6.1e-05 25.0 1.3 1 20 107 126 107 128 0.94 5 18 0.00015 0.052 15.8 0.1 1 21 206 226 206 227 0.97 6 18 2.7e-06 0.00094 21.3 3.1 2 23 252 273 251 273 0.98 7 18 1.1 3.9e+02 3.6 1.1 1 21 288 308 288 309 0.91 8 18 0.021 7.5 9.0 0.5 1 17 315 331 315 332 0.84 9 18 0.00044 0.15 14.3 1.3 1 21 388 408 388 409 0.96 10 18 0.0012 0.42 13.0 2.4 1 21 415 435 415 436 0.94 11 18 0.0012 0.42 13.0 6.3 2 23 442 463 441 463 0.98 12 18 1.5 5.2e+02 3.2 0.3 2 17 479 494 478 495 0.90 13 18 0.00014 0.051 15.9 0.3 2 21 510 529 509 530 0.94 14 18 0.003 1 11.7 2.2 1 21 546 566 546 567 0.96 15 18 0.00012 0.043 16.1 0.3 1 21 573 593 573 594 0.94 16 18 0.00034 0.12 14.7 3.9 2 23 604 625 604 625 0.97 17 18 6.6 2.3e+03 1.2 1.5 1 20 640 659 640 666 0.83 18 18 0.0033 1.2 11.6 3.8 1 20 667 686 667 688 0.93
Sequence Information
- Coding Sequence
- ATGACTTACGAGCGGACTGGTCACTTGGAAAATCACATGCGTAATAATTGCATCTGGAATCCTAATTATCTCAAGATACCTCCCCGGGCTTTTCCGTGTCCTTCGTGCAGAGATGCGAATAAGTCGAATGAATGCAAGTACTGCGGAGAAACTTACCCGCAGCCTAACAGCTTGGTCAACCACATGCGTTATTATTGCAAATGGAATCCTAACGCTCTCAAGATATTTCGCCAGACCTTAACTTGTCCCAAGTGTAGCGCCCTGTACTCAGATCAATATAACTTCGAGGCACACGTTAAATACGATTGCGGACCACCCCATTCATGCCCACACTGTGGAAAAATGTTCTCTAATAGATCCACTCTTAACAGGCACATTGGGAGAAATTGCAGACTGGTTTTGAATATCCCAAGTTTAACGCCCAAAGGTGTTAATGATGATAATGTAACGGTTTGCTTTTGTCACGCTACTATTGCGGCATATGGAGATTGGACCCAAAGGCCAAAGTGGACTGGACTTGGCAATAGATGGCAGGCATCGAGCGGTGGGGAGACACACAGCTGTGTCGTGATGACCCTCAGAACTTTAACGCCCAAAGGAAGCGTGACTAACTCGTATGAATGCAATCACTGCGGAAACATTTACGAGGGGCTTAGTAACTTAGCCAACCACATGAGAAATGATTGCGATTGGAATCCCAAGGGTCTCAAGAAATTTCGTCTGCCCTTCACTTTGGATGTGCCCAAATCGAACAAATGCAAGTACTGCGGAAAAATTTACAGGCAGCGTAATCACCTAGCTCTTCACATGCGTTATCATTGCAACTGGAATCCTAACGTTCTCAAGAAATCCAGCGGATCCTTTATGTGTTCCTGGTGCAGCTCCTCGTACTCAAATATTTATAGCTTGAACTTCCATATCAAACACGATTGCGGGCGTTCCCACTCATGCTCATATTGCGGAAAAAGTTACAACAAAATTAGAGAACTCACGAGCAGCGTTGTCCCTTGGTCAGCCACATGGGTCGTCACTGCATCTAGAATCCCAGCGTTCTCCAGAAGTCTCGTTGGCCTTTTATGTGTTCCTTCTGCAGCGTCTCATACTCAAAGAACCTTTGGTGAACCCAATGAATCCCAGTGTCCTCCAGAAAACCCTCGGCCCTTTAGGTGTTCCTCGTGCAGCGCTTCCTACTCATCCAAAAAAAGCTTAACCGCCCACATTCGACATGATTGCGGGCGTTCCCATTCATGCCCACACTGTTGGAAAATCTTCATGCACTTCACTAGCCTCCTACGTCACATCCAGAACGCAACTAATCTGAATAAATGCAACTACTGCGGAGCAACTTACGGGCAGCGTTGTCACTTGGTCACCCACATGCGCCATCACTGCAACTGGAATCCCAGCGTTCTCCAGAAATCTTGTCGAGCCATTATGTGTTTCTCGTGCGGCTCCTCATACTCAAAGAAGTTTAACTTGAATGCTCAAATTCGTGATGACTGCGGTCAAGACGTGACTAAATTGAAGAAATGCCAGTACTGTGGAAAAGCGTACGAGCAGAAGTATCGCTTAATCAGACACGTAAACGAGTATTGCTTCATGAATTCCAACGTCGTTCGGAAGACATCTCGGCCCTTTAGGTGTTCCTCCTGCAGCGCCTCGTACTCAATCAAATCACACTTGACCTCTCACATTCGACATGATTGCGGACGTACACATTCATGCCCACAATGTGGGAAAATCTTCATGCAGTTCAATGGCCTCCGACGTCACATCCTTCTTTGCTGGGAGAACACAACTTTAGTGAATACATGCAAATACTGCGGAGCAACTTACGGGCAACGTTGTCACTTGGTCAGCCACATGCGTTATCACTGCAACTGGAATCCCTCCGTTCTCCAGAAATCTTCTCGATCCTTTATGTGTACCCGGTGCAGCGCCTCGTACTCAAATGTGCGTCGCTTGAGATTCCACATTAATCACGATTGCGGACGTTCCCATTCATGCAAATACTGCGGAAAAACCTTCCAGCAGATTTGCAGCCTTCAAAGTCATAAGGGCAGAGACGATTCGAAAAAATGCAAGTATTTCGGAAAAACTTACGAGCGGCTTACTTGGTCGCCCACATGCGTCATTACTGCGTCTGGAATCCCAGCGTTCTTGAAAAATATTGTCGGCCTTTTACGTGTTCCTGGTGCAGCGTCTCATACTCAAAGAGAGGTCTTTTGA
- Protein Sequence
- MTYERTGHLENHMRNNCIWNPNYLKIPPRAFPCPSCRDANKSNECKYCGETYPQPNSLVNHMRYYCKWNPNALKIFRQTLTCPKCSALYSDQYNFEAHVKYDCGPPHSCPHCGKMFSNRSTLNRHIGRNCRLVLNIPSLTPKGVNDDNVTVCFCHATIAAYGDWTQRPKWTGLGNRWQASSGGETHSCVVMTLRTLTPKGSVTNSYECNHCGNIYEGLSNLANHMRNDCDWNPKGLKKFRLPFTLDVPKSNKCKYCGKIYRQRNHLALHMRYHCNWNPNVLKKSSGSFMCSWCSSSYSNIYSLNFHIKHDCGRSHSCSYCGKSYNKIRELTSSVVPWSATWVVTASRIPAFSRSLVGLLCVPSAASHTQRTFGEPNESQCPPENPRPFRCSSCSASYSSKKSLTAHIRHDCGRSHSCPHCWKIFMHFTSLLRHIQNATNLNKCNYCGATYGQRCHLVTHMRHHCNWNPSVLQKSCRAIMCFSCGSSYSKKFNLNAQIRDDCGQDVTKLKKCQYCGKAYEQKYRLIRHVNEYCFMNSNVVRKTSRPFRCSSCSASYSIKSHLTSHIRHDCGRTHSCPQCGKIFMQFNGLRRHILLCWENTTLVNTCKYCGATYGQRCHLVSHMRYHCNWNPSVLQKSSRSFMCTRCSASYSNVRRLRFHINHDCGRSHSCKYCGKTFQQICSLQSHKGRDDSKKCKYFGKTYERLTWSPTCVITASGIPAFLKNIVGLLRVPGAASHTQREVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -