Prob017940.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- -
- Assembly
- GCA_028476575.1
- Location
- CM052019.1:30702925-30716206[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.66 2.3e+02 4.3 0.1 1 23 172 195 172 195 0.93 2 21 0.0085 3 10.3 1.9 1 23 213 236 213 236 0.96 3 21 8.8e-05 0.031 16.5 3.0 1 23 242 265 242 265 0.96 4 21 7.4e-05 0.026 16.8 0.7 2 23 271 293 271 293 0.95 5 21 0.0028 0.99 11.8 0.3 1 23 298 321 298 321 0.97 6 21 0.00047 0.17 14.2 3.4 1 23 327 349 327 349 0.98 7 21 0.00042 0.15 14.4 2.4 1 23 355 377 355 377 0.98 8 21 0.00015 0.053 15.8 0.4 1 23 383 405 383 405 0.97 9 21 0.037 13 8.3 4.6 1 23 463 486 463 486 0.94 10 21 0.015 5.2 9.5 1.0 1 23 494 517 494 517 0.93 11 21 5.7e-05 0.02 17.1 0.5 1 23 524 547 524 547 0.97 12 21 0.002 0.71 12.3 1.3 3 23 554 575 553 575 0.96 13 21 2.1e-05 0.0073 18.5 0.6 1 23 580 603 580 603 0.96 14 21 2.6e-05 0.0093 18.2 0.1 3 19 611 627 610 630 0.94 15 21 0.00097 0.34 13.3 0.2 5 23 767 786 766 786 0.95 16 21 0.013 4.7 9.7 0.4 1 20 792 811 792 813 0.94 17 21 5.7e-05 0.02 17.1 0.8 1 23 841 863 841 863 0.98 18 21 0.0077 2.7 10.4 1.0 2 23 967 989 966 989 0.92 19 21 0.0023 0.81 12.1 1.2 1 20 1025 1044 1025 1047 0.93 20 21 0.013 4.6 9.7 3.7 1 23 1053 1075 1053 1075 0.95 21 21 0.00022 0.078 15.3 0.4 1 23 1082 1104 1082 1104 0.98
Sequence Information
- Coding Sequence
- ATGTTTATTACCGCAATACAAAAACAAGCAACGAAGGTCATCGTCAAAAATTGGCACTTAACATTTGGCAACGAATCCATATCGATGCAGCCTTGGAAGATCGTGAAATTCAACGGGACTATGTTCCACGCTTTTGTTCCTCGTCAAATCAAAGACAGGAACCAGAAACTGCCGAAAGTTGAAGAAAGGGAAGGATTTGAAAACATGGAAAAATATAAAAGTGGAAATTATGAGGATGATTTCATGGAGGGGGAAGATTTAGTTGACGTTTCTGACGAATTTTTCGATCAAAAGTTTGAGACGATAGTTCCTATAAAAAATGAAAAAGCATGTAAGAAGTTTCACTTGGGACCTTCGATAGAATTGATATCAAAGGTTCCTGTTGAGGAAGACTCTGATAGAATGTACAAGTGCATGACTCGTGGGGAAGTTAACGTGGGGCTGGGTCCCTACAAGGAAGTTCCCAATGAGAGCAGTAGCTTGGAGGAACCCGCTAAGGAAACGACGCTAAGTTATAACTGCAGTTTGTGTGATTACGTCAGTTTAAGTAAAGTTGTTTTACAGTCACACATCAATCTGGTACACTTGAAGAGAAAAAGCGTCACGGTGGACAGCGAGATTACAGCTGGGAAAGAGTACATCTGCGAAGTCTGTGAATACACGTGTGCCAACAAAAAGCGTTTAAGAGAGCACGTTCTTCGAAAGCATGATCCGGAATTCAAGCACCAGTGCGACACTTGCGGGAAAAAGTTCAAGgtcaaaggggacatgagacttcacatccggttcaagcacaaagagctggcgagagtctgcgagatttgtggtcgatcttgcagcaacagtaactctttgtacgtgcatcagaagtgggcccacttcaagcctaacttcgagtgctccatctgcaaacgtaggatggtgagccaggaaaacctggatcagcacatactctctcagcacgccgacccgaaaagattcgtgtgccagcaatgcggaaaatcattcaacgagatgaatcgcctcaagcaacaccacatgacccacaccggggaaaaaccctatgagtgccacgtttgcaggagaagcttcgccagaagaacagtttatcgacaacatctgctcatacacaccggggaaaaaccctacgtttgtgatatttgtggtaaggccttcgcccaaaagccaggcctgatctgccaccggaagtctcatcccggagatctacccccacttcccgttgtacgcatagaccatatcatcaccgacttcatgaagaaGACGCCGACCACTCGAAAACGTCGCGCGACTCGTACCACGAGGGGACGAAGGCGTGGGCGCAAAAGGGAAAAGAAAATCCCGGGTCGCTCTGTACCTGGAATAACGTACAATTGCACGAAATGCAATTACAGCTGTCGCCTTGAAACTACACTGAAGCGCCATGAAAAGGCGAAACATGACATGGATCGCTCTCTGCGCCACAAATGCACAGATTGCGAGCAAGAGTTCGAGTTCAAGGGCGCCCTCGACGCCCATTTCGCTCGAAAGCATGGCTACGATAATAACAAATTCGTTTGCGATATATGCAAGAAGCGCTTCAAGGTGAAAAATGACGTTGCCAACCACATCCGTCTCACACACGAGGAAAGAAGCGTGCTTTGTGAGTTCTGTGGAAAAGTCTGCAATTCCTCCAACTCCCTTTACGTGCACCTGAAGTGGTATCATCAAAACGTGTCGTACAAGTGCGAGTTGTGTCAGAAACGACTGGTGAGCAaagaaaacttggagagtcacatgaaagcccaacatcgaccgaaggaaaagcccatttgccccgagtgcgggaaaagcttcgccacgaaaaacacccttgccaggcactccgagtcgAGTAAAGAGAAAGAGTATGTGCAATTTTGCGACCATTCCCAAAAGAAAGTTTCTCACACCCTGAGCACACCCCATGAATGCTTCAGAGAATTTGGGATCCCTGGAGAAAGCATGGATGTCGAAAAGGAAGAAGATGGCTCCATGTATACTGATACCAATATTTTCGAAGATGAAACCGAAGACACTGTGGTCATCAAAGAAAAGTCTCCCACTTTGACAAAAGCACAGTCATTCTCAATCTCTGGAGAAACGATGAAGGCAAAAATTGAAGAAGGAAGCTCTGTACTTTTCTGCTCTAACCTCTTTGAAGACGAAATAGAAGAAGACTCTGTCACCCTGAAAGAACTCTGTCTCAGAACCCCTGACAAGCCTCTGCTGCTAAAAGCATCACCTTCATTCGAGTACAAGCAATGCGACAAAGCATTTGCCAGCAAAACTGAGCTGATATCACACAAACGGAGTGTACACAAGAGACAGCTCATGTTCTGCTGCCCAAAGTGCAAAGCTCTATTCAATTCTCTAGATAGCCTGAACGACCACATAGAAGAACGCATTAACAAAACAATGACTCCTACTTCCAGCGGTAACAAATTAGATGAGAGTCGCAAAAAACTTTCTCACGCGAACCCCTTCGAGTGTGAAACCTGCCAGAAAAAATTCAGTTCCCTGAAACTGCTCTTGGAGCACGTCAAAGTTCACTCCATGCCTACCCCAATGAAGGAAACTTACGCAATCCCAACACCGAGTCCCGAGGTTATAGAGTCAATTTTTGACATGCCCTTTGCAGCAGAACCCAACCTACTCTTCTTTCCCTCTCAATCCGTCAAACACAAAGTTATGGAATCTCACTCTTCACCTGAATTTCAAGGTCCAATGGAGCCTCTGCCTCTTCAAGTGTCATTGCTGGAATTCGAAACTCAAGATGCCTGCTCCACCCCTGTCAAGAAAAAAAGCCACCCAGAAGATATCTATTCCCATCATTTATTAGAAGTGACGTCTACGCACTTGGTTTGCAAGGAGTGCAAAAAAAAGTTTTTCTCGATCGCCATGTTTGAGAAGCACGTGTCCAACAACCACGTGGAACATTTTGCGAGTCTTATGGTAAGTCTTTCAAGAAAAAGCATCGCCTTCAAGAGCATCATAAAAGAGTCCATCTGGACCCGGAAGCCTATATGCAATGTGTTCGATTGCGATGTTTGCGGAAAGAGGTTCCATAGTAAGGCAGCTATCGCCAAGCACATGCCTCATCACTTCCCGAAGGAGACTTTTGAGTGCTTGAAATGTCATAAAGTATTCAAAAAAGATAACACCTTTAGGCAACATGCTCTTCTTCATTTTCCTGAGATGAAGCTATACAATTGCGATATTTGCAGTGCGTCTTTTACCCAGAAAGCAGGATTGTCCGGTCACAGGAAGAAGCATGGTGATAATTTACCACCGTTTCCTGCTATAAAGGTTCATCATATTGTTGATCAGTACTTCAAAAGGAGGCCAATCAAAGCTAAGAAGGAGAAGAAGAAGAAGAAGGCGAATGGTAATGAGGAAATGAAGGAAGATACAGTGAAAACGAAGGTGGATGAAGATGAAAAAATGAACGTGGATGAAGCAGAGGTAAAGAAAAATGAACTGGCGATGGTTGAAGGCGAAGAAGAATAA
- Protein Sequence
- MFITAIQKQATKVIVKNWHLTFGNESISMQPWKIVKFNGTMFHAFVPRQIKDRNQKLPKVEEREGFENMEKYKSGNYEDDFMEGEDLVDVSDEFFDQKFETIVPIKNEKACKKFHLGPSIELISKVPVEEDSDRMYKCMTRGEVNVGLGPYKEVPNESSSLEEPAKETTLSYNCSLCDYVSLSKVVLQSHINLVHLKRKSVTVDSEITAGKEYICEVCEYTCANKKRLREHVLRKHDPEFKHQCDTCGKKFKVKGDMRLHIRFKHKELARVCEICGRSCSNSNSLYVHQKWAHFKPNFECSICKRRMVSQENLDQHILSQHADPKRFVCQQCGKSFNEMNRLKQHHMTHTGEKPYECHVCRRSFARRTVYRQHLLIHTGEKPYVCDICGKAFAQKPGLICHRKSHPGDLPPLPVVRIDHIITDFMKKTPTTRKRRATRTTRGRRRGRKREKKIPGRSVPGITYNCTKCNYSCRLETTLKRHEKAKHDMDRSLRHKCTDCEQEFEFKGALDAHFARKHGYDNNKFVCDICKKRFKVKNDVANHIRLTHEERSVLCEFCGKVCNSSNSLYVHLKWYHQNVSYKCELCQKRLVSKENLESHMKAQHRPKEKPICPECGKSFATKNTLARHSESSKEKEYVQFCDHSQKKVSHTLSTPHECFREFGIPGESMDVEKEEDGSMYTDTNIFEDETEDTVVIKEKSPTLTKAQSFSISGETMKAKIEEGSSVLFCSNLFEDEIEEDSVTLKELCLRTPDKPLLLKASPSFEYKQCDKAFASKTELISHKRSVHKRQLMFCCPKCKALFNSLDSLNDHIEERINKTMTPTSSGNKLDESRKKLSHANPFECETCQKKFSSLKLLLEHVKVHSMPTPMKETYAIPTPSPEVIESIFDMPFAAEPNLLFFPSQSVKHKVMESHSSPEFQGPMEPLPLQVSLLEFETQDACSTPVKKKSHPEDIYSHHLLEVTSTHLVCKECKKKFFSIAMFEKHVSNNHVEHFASLMVSLSRKSIAFKSIIKESIWTRKPICNVFDCDVCGKRFHSKAAIAKHMPHHFPKETFECLKCHKVFKKDNTFRQHALLHFPEMKLYNCDICSASFTQKAGLSGHRKKHGDNLPPFPAIKVHHIVDQYFKRRPIKAKKEKKKKKANGNEEMKEDTVKTKVDEDEKMNVDEAEVKKNELAMVEGEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -