Prob065894.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- -
- Assembly
- GCA_028476575.1
- Location
- CM052026.1:9356596-9373143[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 3e-06 0.0011 21.2 0.7 1 23 218 240 218 240 0.98 2 31 0.002 0.71 12.3 1.8 1 23 263 286 263 286 0.96 3 31 0.0058 2 10.8 1.3 2 23 293 315 292 315 0.96 4 31 3.8e-05 0.013 17.7 0.4 1 21 333 353 333 354 0.97 5 31 0.0017 0.59 12.5 0.2 3 23 452 472 451 472 0.95 6 31 7.3e-05 0.026 16.8 0.3 1 23 478 501 478 501 0.97 7 31 9.6e-05 0.034 16.4 0.1 1 23 572 595 572 595 0.96 8 31 0.014 4.8 9.6 0.4 1 23 601 624 601 624 0.96 9 31 0.11 38 6.8 1.4 1 23 637 659 637 659 0.97 10 31 4.7e-06 0.0017 20.5 0.9 2 23 696 718 695 718 0.96 11 31 0.0076 2.7 10.4 0.8 2 23 782 805 781 805 0.93 12 31 2.5 8.9e+02 2.5 0.0 2 23 814 836 814 836 0.84 13 31 0.044 16 8.0 0.0 2 23 843 865 842 865 0.93 14 31 7.1e-06 0.0025 20.0 0.7 1 23 873 895 873 895 0.98 15 31 1.2 4.2e+02 3.5 0.2 2 23 934 957 933 957 0.93 16 31 0.016 5.7 9.4 2.6 1 23 960 983 960 983 0.97 17 31 0.0018 0.64 12.4 0.8 2 23 990 1012 989 1012 0.95 18 31 0.0014 0.49 12.8 1.8 2 21 1040 1059 1039 1060 0.95 19 31 0.0022 0.77 12.1 1.8 2 23 1074 1095 1073 1096 0.93 20 31 0.29 1e+02 5.5 1.1 1 23 1099 1122 1099 1122 0.94 21 31 0.0075 2.6 10.5 0.4 2 23 1129 1152 1128 1152 0.93 22 31 0.78 2.8e+02 4.1 0.2 2 23 1160 1182 1160 1182 0.95 23 31 3 1e+03 2.3 0.0 2 23 1189 1211 1188 1211 0.87 24 31 0.18 65 6.1 2.7 2 23 1220 1242 1220 1242 0.96 25 31 1.3 4.4e+02 3.5 0.9 2 19 1248 1265 1248 1270 0.91 26 31 0.014 4.9 9.6 0.1 1 23 1324 1347 1324 1347 0.96 27 31 3.5e-05 0.012 17.8 0.7 1 22 1370 1391 1370 1391 0.95 28 31 0.46 1.6e+02 4.8 1.8 2 23 1502 1524 1501 1524 0.94 29 31 1.9 6.7e+02 2.9 1.2 2 23 1531 1553 1530 1553 0.96 30 31 0.16 57 6.3 2.1 1 23 1564 1586 1564 1586 0.97 31 31 0.007 2.5 10.6 2.5 3 22 1595 1614 1594 1614 0.94
Sequence Information
- Coding Sequence
- ATGGGGAAAACGAGCACTTTCCTCATACAGTTGAGAAAATTTAAACTTCTAGCACGCTACGAGGACGTCGACGATTCGAGGCAAATCGTGTCAGCAACTGACCTTGGTCTCGGAACGATAGCGGAGGAGGATCGTTTGCCGAAGGCTGTGTGTTTTCGGTGTCTGTACAATTTGGAAAACTTTTACGACTTTAGAACCGCGTGCGTCAACGCGGTTTCGGTGCTCGAACGGAGCTTAACACCAGATAACGAGTCTGACTCATTTTTAATTACAAATTTTCAGAACAAAAATGGATTCTTTCATACTGACATGCTCAAAGACAAAGAAAACATGCCGATTCTTATACCAGAGGCCCCCATAGTCAATCCCAATGCCGCACTTGGCACACCACCTAGACTGAGTTCCGATGGAGAGGCTGATCATGAAATCGAAGAAACAGCTAATCAAAGTGGATCTGATGAAGGCGGTGACGATGTGGATGATCGCAAGTCCGACGAGTACGAGATGGATATGGAGACAAATCCAAGTGATTTCCTTGAGATGACGTCGACAGTTTGCGAGGATGGCGCTGACGACAGTCGGTTGGCGAATTCTCATGAAGCCGTAGGCGCCGATGGGGCCTTCGAGCACAAAAATGAGCAGCACGAGGTCTACGTTTGCTCCCTGTGCGACAAAGCCTTCAGCTCGAAAGGTCACTTGTCGCTGCACGCGCGTATACACGTCGGCGCCGGTGATGTCATTGGCGAGAAGGTCATCACCAATGATCACACCTCGTACAAAAGGCCCTACCAATGCGATCTTTGTAACAAATCTTACTCCACGGCGAAACATAGATGGGGACATGTTTCCACGTCGCATAGAGGAAACCCGGCAGTGACATGTGGCCACTGCAGTCGTATTTACTCGACGCGTCTCAACCTCGATGAACATATAAAGTCGCGACACGCTGGTTTGCCACCTCCACCCCCTTCGAAAGACGGGCTCGTAGAACAGAAATACCAGTGCAAAATGTGTCCGAAAATGTACACGAACATTACGGATATGAAGAGGCACATGCGTGCTTGTTTTATGGAAAAGAAAAAAATACCGAGCAACAACAAATTGGAAAAAACAAGAAAAGACAAGTCCCTCATGGACGATTCTGAGTCGTCTAATCATGAAACGGACGAAGATTCCCAGGGCTACAAAAATGCCGAGGCGAAACTCGCCAAAAATCCCCAGCTCACTATACTTAAACAAGCCCTCACTAAAGGTTCCGAATCCCTAAAACGAGATATGGAAGAACGACAGAAAATCGCAAACAAAATTAAGAAATCTTCGCCAAACGATGTTGACAGCTACAAACGTTGGCTTTGTGAAATTTGTCCCCAAAGTTTCGGAACCGTGGAAAATTTGAAAAAACACGAAACGTACCACGACGGCGAGAAACCGTTCATTTGCGTGATTTGCGAAAAAGATTTTGTTCTTAAATCCTCGCTGAGTAGGCACATTCAGACGTCGCACAACGTGGACGCAGCCCCTTACGTTGACGGCGATAAATGCTTGAAGAAAGTTTTGACGTCACAACTTTGGAATCCGCAGGCTGTGAAACAGGAAATCAAAGAAGAAGCTGGCAACGAGCATTCGATATCTCCTGTATATCCTGAGCCACACATGAGAAACAAGGAAGAACGCGAAAGCAACCATGAAAATATGATGGAAATTGAGACAGTTTTTGTGTGCGAAATTTGCACTCGAGATTTCAATGATCGGGCTTCTCTATGGCTTCATATCCGCGCTACTCACAAAGAATGCGCCGCTTTTGCTTGTGGCATTTGCCTGAAAATTTGCGAGGACAACATACAGCTCCAAAACCATGTAAATATGTACCATGGAGGGTCAAAACGTCAAATGTCCGAACAACGAAGGTACAGCTGTTCCATTTGTGGCAGGCAACACGATTCGAGGAAAAAATTGATAACCCACGTATCAATTCATAACCTCGATCCCAGTTATGACCCAGCGGCGTTTGTGCAACTCAACGAGAATTTGAATGACTTGAGCGAGCAATTTCTTGAGCCCGAAGCAGAGGAGGGGGAAAAAGTTGAATGCAGTATGTGCTCTAAGTCGTTTCCCACTGAGGATCATCTTATTCGGCACCAGAGGAATGCTCACAGGGCCGAAAACGTGGTCGCCAATGGAGATCCAGGAAATCAAAGTGCAAACAGTCCAAGCGTTGGTGGAAACGTTAATAAACCACAGTATCACTTGATTTTCCTATGCGAAATTTGTGGAAGTTCACATTCAAGCAAATGGGACAGATGGTTGCACGTCAGTAGAGACCACAGCGACGAACCGTCGATTAGATGCGAACGCGAGGACTGCGGAAAAATCTTTGCCACGAAATCTTTGCGTAACGACCATGCGCAGCACCATATGGTTCAGGGCAGCTCGCCCAACACCTGCGAAATATGCGGAAAATTGTGGGGCAGTCGCGTCGACTACTGGAAACACGTAATGGGCGTTCACTCGGACACAGTGCCATTGATATGCGGCGTTTGCCTCAAGGTGTTCCCAAGCGTGCAACAGCTCAGTGCCCACGTCAAAGCCAAACACTGGCCCTTGACCAACGGCGACTTCAGCTGTGACATTTGTGGCCGACCCTACTCGAACAAATCCAAAATGGCGAGGCATCGAAAAATTCACGGCCTTGACATGGATTTCCAGGGTGCGACAACGACCAACAACGAAGCCAGCACAAACGAGGTGATGGTCAAGATGGAACCCAACGTGCCTCACGTGCCCGAGAGCATCGACTTGACTTGCGACTTGTGTAACGACGTCAAGTTCGCTAACGCCGAGGAACTGAGTTATCACAAGAAAAAAGCTCACAGCCAGTTTCCTTGCGATCTTTGCATCAAGTGCTACGGCCGAACGTCGCACTTGTGGAAGCACGTGAATCGTGTTCACAAGGGCCACAAAGACGTGACCTGCAGGTTTTGCAACAAGACGAGCGCCTCGAGGGATCATTTGGCCGCGCACATCGCGAAATTGCACAGATACGAACCAGACGCGAAGCGCGAGATCCAAAACGTTCGCCACAAGAAGATGTCCAAGGAGGAAAGCGAGGACTGCCTGAGTTGCCCGAAATGCCAAAAACTTTTCCACAAGCGATACCTTCTGCGTCGTCACATGAAGGGATGTCAGATTTACAGGAAAGATCCTGGAGCTCTATTGACTCGTTGTCGGGCCTGTGAAAGGATATTCAAAGACCGCGCGAGTCTTCAGAAGCACATCGAAAACCATCACACCTCGTACACTTGTCACTTATGCAACGAGACCATCACTTCGAAACTTGGCATCATGACACACAATCGTGTCAATCACATGGCCCATCCAGATTTGACCTGTGAAATTGGCAATTGTCGCAAGTTATTCCGCACCAAAGCCGACCTCGAGTCCCATCGCAACGATCATAATTACCACACGATGCCCAACGTTTGTGATTTTTGCGGTGATACAGTCGAGAACAAGCTCAAGCTCAAAATGCACATACTCTCGTTACATCGTAACGAGATCGGGGTTTCCTGCGGTGTTTGCCTGATACCCATGAAGGATCCGAAAGACTTGAAAAAACACGTCGAAGACGTCCATGGAAGCATCCTCTTGAAACCTAACACCTGCCAAGTTTGCGGCAAGCAGTACGCCTCGAAATGGAAGGCCTTCGATCACACGAAAAAATGCCATGGCAAAGTTTTCCGCACGTGCAAACAGTGCTTGGCGGTTTTCATCACTGACGACGATCTCAGGTCGCACTGCTTGAACATCCATAACGTGACGTCGGAACAGTTGGCATTGTTCGAAAATCGCGATGGCAAGAATGATGATGATGGATCGAAGCAGGAAGGCATGGACGACATGGACTTTTACGATGACTTGTACGACGTGCAAAAGTCGAAGGGAAAGAAGAAAAAGAGGCCCACGGACACCTACGATTGCGAGATCTGTCCGGAGATGTTTTTGAACGAAAGCACTCTTGAAGGACATTACAGAAACGTTCACAACATTGAACCCCTGCATCGACTGAAGAAAGCCAAAATGGCCGATAGTAAAAAACGCAAGAGTAATTTCGAGTGCAAGTCGTGCAACAAGCAGTACTCGACGAAAGCCAACCTGTGGAACCACATGAGCACATGCACCAAAGTCCCCCAAACCCATGATATCAGTAACGATTACCCGTCATCCATCCTGGAGGCCCATCTTAAGAACAACAACCAGATCAAGCAACACGATGATACGCTGGCGAGCGATTCTATCATCAATGAGTCTAATCTGAACATACCTGATTTCAATCTCTTCGAGGGTATCAACATGCAACTTTCCGGCCAAAAACCTGTGCCGAATTTGATGCCCCTGAAAACGGCGAAACGCGATCAAATGAGTTCCCATTTCAGTGGTGGCAGTGTCAAGTACTCGCGCAAAGATTCGCGCAAAGTGTACGACGAGTCGACCAACACAGAATGTACGTGCGAAGTTTGCAACAAACCATGGCCCGCAAAGAAACATCTCTGGCAACATCTGATACGATTCCATCGTGCCGAGGCTGCCGTGACGTGCGGCGTTTGCTTGAAACTCTGCCACACATACGAGGATCTCTCGGAACATTTGCAGATGGCGCATCAGTCGCTGCTGTCGTGCGAGGGCAATAACTTTACATGCAAAATCTGCGGGAGGTATCACAACGCGCGTAGCAAATTGTCGCTGCATATGAGCATTCACATCAATTACAATGGCATCGAATGCTGCAAAAATTGTCATTACAATTTCGAGAACGCGGACAAGTTGAAGGAGCACATGGCGACTTGCGTGGCCAAGACGAGTGAGGAAGTCGAAGAGATGAAACAGGAAGAGGACATCGAAGGGGAAGAAGATGAAAATGAGGAAGAGGACGATGAAAAAGAAAGTTCACCGGGAGAAGAGGAAGAGGGCATTGTTGAGGGAgctgaagtcgcggaatacgagtcagacgatgacggctcggatgacgatgacgatgatgacagtaactccgacaattccgcggattccgacagtgatagcaattcgagttctagcgatgaagacgatgatgacgctaatgaaaacgaGTCGAGAAATCAGAGCGGGGGAAGCGACTCGGAGAGTGACAATGAGGACGAGCAATCGGCTGATGAGGATGAGCATGTTCCTCAATCTCAGCCTGAGGATGTTGAGCGAAATTTGGCAATGAAAATGGAGGAGCCGGCGGACATGTCCGATGAGGACGAGGAAGAGGATGACGATGATGGCCCACCTGTGCTCAGTCCCATGATGCCCATTGGCGCTGAGGACCAGGACAACGATCAGTCCAGCGAGGCAACCCATAAGTTGATGCCAATGGTTCCATTCCATGTTAAAATGGAAGGGACACATGAAGACAATGTGGATGATTTCAATAAATACGAAGAGCACCCACCAAACATTGAGTCGGAGGATATGAAAGACGAAGACTCAGAAGATGGGGAAGAAGTGGAAATGGAGGAAGAGGGCGCCACTGACAGCGATTCCGACGAGGAGGAGAATGCTAAGATGGAATACGCTGATGAGGAACAAGACTACGAGCTCGAAGATTACGCCAAAGAGAGGGAAAGTGGCAACGCGGCCGAGGTTGCCAGAAGTTGA
- Protein Sequence
- MGKTSTFLIQLRKFKLLARYEDVDDSRQIVSATDLGLGTIAEEDRLPKAVCFRCLYNLENFYDFRTACVNAVSVLERSLTPDNESDSFLITNFQNKNGFFHTDMLKDKENMPILIPEAPIVNPNAALGTPPRLSSDGEADHEIEETANQSGSDEGGDDVDDRKSDEYEMDMETNPSDFLEMTSTVCEDGADDSRLANSHEAVGADGAFEHKNEQHEVYVCSLCDKAFSSKGHLSLHARIHVGAGDVIGEKVITNDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTSHRGNPAVTCGHCSRIYSTRLNLDEHIKSRHAGLPPPPPSKDGLVEQKYQCKMCPKMYTNITDMKRHMRACFMEKKKIPSNNKLEKTRKDKSLMDDSESSNHETDEDSQGYKNAEAKLAKNPQLTILKQALTKGSESLKRDMEERQKIANKIKKSSPNDVDSYKRWLCEICPQSFGTVENLKKHETYHDGEKPFICVICEKDFVLKSSLSRHIQTSHNVDAAPYVDGDKCLKKVLTSQLWNPQAVKQEIKEEAGNEHSISPVYPEPHMRNKEERESNHENMMEIETVFVCEICTRDFNDRASLWLHIRATHKECAAFACGICLKICEDNIQLQNHVNMYHGGSKRQMSEQRRYSCSICGRQHDSRKKLITHVSIHNLDPSYDPAAFVQLNENLNDLSEQFLEPEAEEGEKVECSMCSKSFPTEDHLIRHQRNAHRAENVVANGDPGNQSANSPSVGGNVNKPQYHLIFLCEICGSSHSSKWDRWLHVSRDHSDEPSIRCEREDCGKIFATKSLRNDHAQHHMVQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPSVQQLSAHVKAKHWPLTNGDFSCDICGRPYSNKSKMARHRKIHGLDMDFQGATTTNNEASTNEVMVKMEPNVPHVPESIDLTCDLCNDVKFANAEELSYHKKKAHSQFPCDLCIKCYGRTSHLWKHVNRVHKGHKDVTCRFCNKTSASRDHLAAHIAKLHRYEPDAKREIQNVRHKKMSKEESEDCLSCPKCQKLFHKRYLLRRHMKGCQIYRKDPGALLTRCRACERIFKDRASLQKHIENHHTSYTCHLCNETITSKLGIMTHNRVNHMAHPDLTCEIGNCRKLFRTKADLESHRNDHNYHTMPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHGSILLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFITDDDLRSHCLNIHNVTSEQLALFENRDGKNDDDGSKQEGMDDMDFYDDLYDVQKSKGKKKKRPTDTYDCEICPEMFLNESTLEGHYRNVHNIEPLHRLKKAKMADSKKRKSNFECKSCNKQYSTKANLWNHMSTCTKVPQTHDISNDYPSSILEAHLKNNNQIKQHDDTLASDSIINESNLNIPDFNLFEGINMQLSGQKPVPNLMPLKTAKRDQMSSHFSGGSVKYSRKDSRKVYDESTNTECTCEVCNKPWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCHTYEDLSEHLQMAHQSLLSCEGNNFTCKICGRYHNARSKLSLHMSIHINYNGIECCKNCHYNFENADKLKEHMATCVAKTSEEVEEMKQEEDIEGEEDENEEEDDEKESSPGEEEEGIVEGAEVAEYESDDDGSDDDDDDDSNSDNSADSDSDSNSSSSDEDDDDANENESRNQSGGSDSESDNEDEQSADEDEHVPQSQPEDVERNLAMKMEEPADMSDEDEEEDDDDGPPVLSPMMPIGAEDQDNDQSSEATHKLMPMVPFHVKMEGTHEDNVDDFNKYEEHPPNIESEDMKDEDSEDGEEVEMEEEGATDSDSDEEENAKMEYADEEQDYELEDYAKERESGNAAEVARS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -