Prob017937.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- ZBTB41
- Assembly
- GCA_028476575.1
- Location
- CM052019.1:30673198-30687171[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00051 0.18 14.1 1.0 1 23 111 133 111 133 0.97 2 20 5.9e-06 0.0021 20.2 2.0 1 23 144 166 144 166 0.98 3 20 5.9e-07 0.00021 23.4 1.6 1 23 175 197 175 197 0.99 4 20 0.063 22 7.5 0.5 1 19 344 362 344 364 0.94 5 20 0.0013 0.47 12.8 3.4 1 20 382 401 382 402 0.94 6 20 0.0013 0.45 12.9 4.1 3 23 412 432 411 432 0.96 7 20 0.0068 2.4 10.6 0.5 1 23 436 458 436 458 0.96 8 20 7.8e-05 0.027 16.7 1.5 2 23 465 487 464 487 0.94 9 20 0.011 3.9 9.9 0.3 1 11 495 505 495 509 0.87 10 20 0.0036 1.3 11.5 0.5 1 23 533 556 533 556 0.93 11 20 1.1e-07 4e-05 25.6 5.1 1 23 588 610 588 610 0.99 12 20 6e-05 0.021 17.1 0.9 2 23 616 637 615 637 0.97 13 20 0.043 15 8.1 0.0 1 23 642 664 642 664 0.98 14 20 2e-05 0.0071 18.6 0.8 1 23 672 694 672 694 0.98 15 20 0.057 20 7.7 2.0 1 23 700 723 700 723 0.93 16 20 2.4e-05 0.0085 18.3 1.3 2 23 735 756 734 756 0.96 17 20 1.6e-06 0.00055 22.0 2.0 1 23 762 784 762 784 0.95 18 20 6.3e-07 0.00022 23.3 0.2 1 23 790 812 790 812 0.98 19 20 2.2e-07 7.9e-05 24.7 0.7 1 23 818 840 818 840 0.98 20 20 0.00017 0.06 15.6 0.6 1 22 846 867 846 867 0.97
Sequence Information
- Coding Sequence
- ATGTCCCAAGAGAAAGAGCAATATTTCATAGAGAAACTGGGGCCGACCGGCGAGATAAAAGTATTGAGCGCCGAAGACACGGAGAGGCTATTGGCGGTAGACGACAGCGCCTTCAAGGGCAGAGCGATGACGGGGAACCTCGCGCGTTGCGCCATTTACGAGCAGGTGGTGGTAATGGAGAAGAAGCCTTGCGAATGCACGTGCGAGGTTCTCGACGTCGGCGACGAAGAGGAGGACGCGATGGCGCCGGGAAAAACGCAGgacaagggcatttgcgggacctgcggctgctacagaagcgcccggcgccacgatctcgagtacaagcagttccaatgcgacgtctgcaacgccacctttcgataccgccaaggcctgcgcttgcactcgaagctccaccagcccgattacgtggccccccaaaagaaacatcgctgcgagctttgcgacaagcgctttgcccgcaggcaggtccttctggtgcacatgcgcacccacggcaacgccgggccccaaaacgaatacgtctgtcacatttgcggaaaatcggtctcgagcaaaacgtacctcacggtccacgtgagaaagcacacgggagaaaaaccccacgtgtgcgaaatttgcgaacTCATGCCAAGCAAAACGCCCAGGTTCAGCAGGAGCAACAGTACCTGCAGCAATTGCAGCAAGCCGAGGAACGGATTGCCGAGCAAGGTCAAGAGATTTTGCCCAGCTGAACCTTTTTTAATTGGGAGGTCTGGGATTTTGACGACGGGCTGTTTTTCGAAGGCTGGTCTGCTTGAAAATGTGGTGGTTATCTGGGTTCAGGGGGGAGGTCATTGCATGATGAGTTTTTGCAAGATTTTGACTTGGGTGTGGATGAAAAAAGCAAGAGAAGAGAGGATAAAAAAAGTACCAATGGCCAATCGAAGAAGGCGGATGAACGCCGTGCCGAAATACGCAGAAAAGCCCGCTCACGTATTAGCAGTGTCCCCCGAAACCCCGGAAATTCTCGATACACCCGAGAAGCACACTTGCGACTCTTGCGATGAAACGTACGACACGGAAAAAGAATTGCTTCTGCACAAAACCGAAACCACAATATTACGCACTCGGGCCTCCATGCGCGCCAGCGACCCCATCCACGAATGCACTTACTGTTCCAGGCGTTTCAAGAACGCTAACCTCCTGAGCAGGCACGTCTGCCCGATAAAACCGGGGGAGCTGGCGCATTGCGACAGGTGCAACAAAGACTTCAAGAACCTGCGTAGCCTGAAAAAACACGTGGCACGCCACGACCAGTCCTACAACTGCAGCATTTGCAACAAATCCCTGAGCAGCCCTTTCATTCTCAAACTCCACGAAATGCGCCACAAGAATTTGTTAAAATGTACGtgcaaggtttgcggcaaaggtttccagtcatcaagggctctgcaggtccatttgtcgagctcgcattggacctcgcagacaaggtctttcgtctgcgaggaatgcggcaagactttcacGTTGCGCCGGCAAGAGACGAACGCACGAAAAAAGAACGTCTCCTTGAAAAGAGAACTGGAACAAGACGAGCTACCTCTGGCCTACTACTGCAAAATCTGCAGCACCTTTTTCCCCAGCCAAGCTCGCCTGGACCAGCACCAGGAGGCGTCGCACAAAAATAACAGCTGGTGCCTGCGCAAGCACATGAAGAAAaactcaacggccaaggcgaaggacgaagaggaaagccccgaagacgccgagaggtacacctgcgagacctgcggcaaggtgtttcgccacaagagcaacttccagaaacacctgcagcgccacgcccagggcaacatgtcctgcaagatgtgccccaagaagttccgcctggcgcgtgacctcgcgagacacgagaagacgcacttcatgccgagctacgtttgcagcgcgtgcgattacgagaccaccgtcatggccgcgctgagcatacacatgctccggcacacggacaagtccgagctgcccttcgagtgctccaactgcgacaaacgcttccgtaaggcccttgacctccaggagcactacaacgtgcacaccggtgagaagccctttgcgtgccagatctgccagagcgcgttttccctgaaacgacaactctcggcccattgtcgacgcctgcacccggagatgagggccaataaggtcaccagcaccatgtgcgacacctgcgggcgtaccttggcgaccaagcgatcgctctttcgccacatgcaaagccacaaccccgtcaagctcttcctctgcgactattgcggcaaaagcttgtcttccgcggagcacctgaagaaacaccggagaattcacaccggagaaaaaccttacgtctgcgatgcttgtggaaaaggattcaccgactcggagaacttgaggatgcatcggcgtgtccacacgggggaaaagccctaccaatgcgaccagtgccccaaggcatttagccagaggtcgacgttgacaattcacaggagaggtcacaccggggaaagaccttacgtttgtcaattatgtggtcgtggattctcctgCCAAGGCAATCTCACGGCGCACCAGAAAACAACGTGTATTTAG
- Protein Sequence
- MSQEKEQYFIEKLGPTGEIKVLSAEDTERLLAVDDSAFKGRAMTGNLARCAIYEQVVVMEKKPCECTCEVLDVGDEEEDAMAPGKTQDKGICGTCGCYRSARRHDLEYKQFQCDVCNATFRYRQGLRLHSKLHQPDYVAPQKKHRCELCDKRFARRQVLLVHMRTHGNAGPQNEYVCHICGKSVSSKTYLTVHVRKHTGEKPHVCEICELMPSKTPRFSRSNSTCSNCSKPRNGLPSKVKRFCPAEPFLIGRSGILTTGCFSKAGLLENVVVIWVQGGGHCMMSFCKILTWVWMKKAREERIKKVPMANRRRRMNAVPKYAEKPAHVLAVSPETPEILDTPEKHTCDSCDETYDTEKELLLHKTETTILRTRASMRASDPIHECTYCSRRFKNANLLSRHVCPIKPGELAHCDRCNKDFKNLRSLKKHVARHDQSYNCSICNKSLSSPFILKLHEMRHKNLLKCTCKVCGKGFQSSRALQVHLSSSHWTSQTRSFVCEECGKTFTLRRQETNARKKNVSLKRELEQDELPLAYYCKICSTFFPSQARLDQHQEASHKNNSWCLRKHMKKNSTAKAKDEEESPEDAERYTCETCGKVFRHKSNFQKHLQRHAQGNMSCKMCPKKFRLARDLARHEKTHFMPSYVCSACDYETTVMAALSIHMLRHTDKSELPFECSNCDKRFRKALDLQEHYNVHTGEKPFACQICQSAFSLKRQLSAHCRRLHPEMRANKVTSTMCDTCGRTLATKRSLFRHMQSHNPVKLFLCDYCGKSLSSAEHLKKHRRIHTGEKPYVCDACGKGFTDSENLRMHRRVHTGEKPYQCDQCPKAFSQRSTLTIHRRGHTGERPYVCQLCGRGFSCQGNLTAHQKTTCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -