Prob023284.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- -
- Assembly
- GCA_028476575.1
- Location
- CM052028.1:11247427-11268840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.00028 0.1 14.9 3.0 2 23 16 37 15 37 0.97 2 34 4.8e-05 0.017 17.4 2.1 1 21 52 72 52 73 0.96 3 34 0.014 5 9.6 8.3 1 23 83 105 83 105 0.98 4 34 0.02 7 9.1 0.8 1 21 120 140 120 141 0.95 5 34 0.00021 0.074 15.3 8.9 2 23 151 172 151 172 0.97 6 34 4.3e-05 0.015 17.5 0.9 1 21 187 207 187 208 0.96 7 34 0.024 8.3 8.9 0.1 1 21 214 234 214 235 0.94 8 34 0.016 5.6 9.4 1.3 7 23 247 263 242 263 0.93 9 34 0.0021 0.72 12.2 3.6 1 21 278 298 278 299 0.94 10 34 1.2e-06 0.00043 22.4 5.2 2 23 310 331 310 331 0.98 11 34 1.3 4.6e+02 3.4 1.1 1 15 346 360 346 362 0.92 12 34 3.2e-07 0.00011 24.2 4.1 2 23 366 387 366 387 0.98 13 34 0.77 2.7e+02 4.1 1.8 1 13 402 414 402 417 0.90 14 34 0.0016 0.56 12.6 7.0 2 23 423 444 423 444 0.97 15 34 0.0045 1.6 11.2 1.4 1 21 459 479 459 480 0.94 16 34 0.0088 3.1 10.2 0.4 1 22 486 507 486 507 0.94 17 34 0.00078 0.27 13.6 0.9 4 23 528 547 528 547 0.96 18 34 0.00036 0.13 14.6 0.7 1 21 562 582 562 583 0.96 19 34 0.12 44 6.6 0.3 1 21 589 609 589 610 0.87 20 34 0.00013 0.045 16.0 2.3 2 21 617 636 617 637 0.96 21 34 0.0004 0.14 14.5 1.0 2 21 671 690 671 691 0.96 22 34 5.4 1.9e+03 1.5 0.2 1 13 707 719 707 721 0.88 23 34 3.9e-05 0.014 17.7 2.9 3 21 728 746 727 747 0.95 24 34 0.001 0.36 13.2 0.3 1 21 763 783 763 784 0.96 25 34 0.0017 0.6 12.5 6.4 2 23 794 815 784 815 0.97 26 34 0.00016 0.055 15.7 0.7 1 21 830 850 830 851 0.96 27 34 0.0034 1.2 11.5 3.3 2 23 872 893 872 893 0.97 28 34 0.015 5.4 9.5 2.5 1 21 908 928 908 929 0.94 29 34 2.5e-06 0.00087 21.4 0.8 2 21 940 959 940 960 0.96 30 34 0.00014 0.048 15.9 0.5 1 21 979 999 979 1000 0.96 31 34 6.8 2.4e+03 1.2 0.2 1 10 1006 1015 1006 1017 0.85 32 34 4.9e-07 0.00017 23.6 1.0 2 21 1019 1038 1019 1039 0.96 33 34 5.7e-05 0.02 17.1 1.9 1 21 1055 1075 1055 1076 0.96 34 34 3.3e-05 0.012 17.9 1.3 2 21 1083 1102 1082 1103 0.94
Sequence Information
- Coding Sequence
- ATGAACGAAGGATCATTCGGTTTAAAGTACACTCTCGATTGGGACACATGCAAGTACTGCGGAAGAATTTACAAGGAGGGTCATCACTTAGTGAGGCACATTCGTTATCATTGCTACAGGAACCCCAACCTTGCTCAAAAAATTTCTATGCCCTTCGTGTGCCACACGTGCAATGCCGCGTTCACAACAAAGTATAAATTAATCTCCCATATGCGACATGATTGCGGACAGAACATCTTAGATGATCATAAATGCCAGTACTGCGGAAGATTTTACGAGAAGCGTCAACACGTAGTGAATCACATGCGTCATCATTGCAACTTTAATCCCGAACTTTCCCACAGAACACCTAAACCCTTTATGTGCCAGACGTGCAATGGCTCATACTCGAATAAGGATACCTTTATCTACCACGTGCGATACAATTGCGGCAACACGTTCGGCTGGAATAGTTGCAAATACTGCGGAAAAACTTACGAACAGCATAGACACTTATCCAAGCACATGCGTCATCATTGCGATTTGAATCCCAACCTTGCCAACAAAACACCTAAACCTTTCGTATGTCCGACATGCAATGGCTCATACACAAAGGAGAGTAACTTACGCCACCACATGCGATACGATTGTGGACGTTCCCATCCATGCCCATATTGCGGACAAATCGTTTTACAGAAACGCAACCTTTATGCGCATATCAAGCAGAACACCTTTGATTGGAATGAATGCAATTACAGCGGAAAAACTTACAATCAGCCTCATAACTTATCCGAGCACATGCGTCATCATTGGCACTTGAATCCCGACCTTGCTGGCAAAACACCTAAACCCTTTTTTTGCACGACTTGCAATCGCTCATACTCAAATAAGGGTTCCTTAAACTACCACAAGCGACATGATTGCGGACAGAACACTATTGACTGGAATAGATGCAAATACTGCGGAAAAACTTACAACCAGCCTCATAACTTAGCCAAGCACATGCGTCATCATTGCCACTTGAATCCCGACTTTGCTCGCAAAACACCTAAACCCTTTGTTTGCACGAATTGCAATGGCTCATACTCAAATAAGGAGAACACCTTCGATTGGAATAGATGCAAATACTGCGAAAAAACTTTCAACCAGCCTCATAACTTAGCCAAGCACATGCGTCGTCATTGCAAAATGAATCCCGACCTTGCCCACAAAACATCTAAACCGTTCGTTTGTCCCACTTGCAACACCTCGTACTCAAAGAAATTTAAGAATACGTTCGATTCGAATAGATGCAAATACTGCGGAAAAACTTACTACGAGCCTAGACACTTATCCAATCACATGCATCATCATTGCGATTTGAATCCCGACCTTGCCCACAAAACATCCAAACCGTTTGTGTGCCCCACGTGCAATAATTCGTACTCAACTAAGAAAAACTTAATGTTTCACATACGACACGATTGCGGACGTTCCCATTCATGCCCACACTGTGGAAAAATTATTTTGGCGAAAAGCAACCTTATCAAGCATATCAAGCGTTACTGCAAGAAATTGAAGGAAACTCACGAAAATAAGAACACGTTCGATCGGAATAGATACAAGTACTGCTGGAAAAAATACGAGCGGCCAACTCACTTGGTACAGCACATGCGTTATCATTGCCACTTGAATCCCGACCTTGCCCACAAAACATCTAAACCCTTCGTTTGCCCCACGTGCAATATCTCGTACTCACATGAGTTTAGCTTGATTTCCCATATACGGCACGATTGCGGACGTTCCCATTCTTGCCCACACTGTGGAAAAATAATTTTGCTGAAAAGCAAGCTTCTTGCGCATATCAAACAGAACATTTCCGATCGGAATAGATGCAAGTTTTGCGGAAAAACTTACAGCCGGACTAGGTATTTGGCCAATCACATGCGTCATCGCTGCTACTTGAACCCTGACGTTGCTCACAAAACACTTAAACCCTTTGTGTTCCCTACGTGCAATGCCTCATACACAAAGAACATGTTCGATCGGAATAGATGCAACTACTGCTGGAAAAAATACGAGCGGCCACGTGACTTGTCCAATCACATTCGTCATTATTACAACTCTAATCCCGACTCCGCAATCAAATCACATAGACCTTTCGTGTGCCTCACGTGCAATGCCTCATATTCAAATGAGAAAGAGACGGTCGATTGGAATTGTTGCAAGTACTGCGGAAAAACTTACAACCGGCCTACTTATTTGGCCAATCACATGCGTCATTATTGCAACTTGAATCCCGATGTTGCTCGCAAAACACTTAAAACTTTTGTGTGCCCTGTGTGCAATGCCTCATACTTTAATAATAGTAGCTTACTCTACCACAGGCGACACAATTGCGAGTACACTTTCGAAAGGAATACATGCAAGTACTGCTGGAAAAAATTCGAGAGGCCAGGTGACATGTTCAGGCACATGCATCATCATTGCAAATTGAATCCCGACAAGACCGAAAAAACAGCTAGACCCTTTGTGTGCTCCAATTGCAATGCCTCATACTCAAGTAAGCGTAGCTTATCCTCCCACATGCGATATGATTGCGGGCGTTCCTATTCATGCCCAAATTGCGCAAAAAAGAACACGGTTGATCGGAATAGATGCAAGTACTGCTGGAAAATATACGAGCGGCCATGTGACATGGCAAGGCACATGCTTCATCATTGCAGCTGGAATCCCGACAAGACCGACAAAACAACTAGACCCTTTGTGTGCTCTAATTGCAATGCCTCATACTCAAATAAGAAACACTTAATGTTCCACATACGACACGATTGCGGACAAAACGCGTTCGAATGGAATAGATGCAAGTACTGCGGAAAAACCTACGACCGGCTTAGTTATTTGACCAATCACATGCGTTATTATTGCAACTTGAATCCTGACGTTGCTCACAAAAAACCCAAAACACTTAAACCCTTCGTGTGTCCTACTTGCAATGCTTCATACTCAATGAAGTTTAACTTGAATGCCCACATGCAACACGACTGCGGACGTTCCCATTCATGCCCACACTGCGAGAACGCGTTCGATTGGAATAGATGCAAGCACTGCGGAAAATCTTACAGCCGGCCTAGTTATTTGGCCAATCACATGCGTTATAATTGCAACTTGAATCCCGACGTTGCTAACAAAACACCTAAACCTTTTGTGTGCCATACGTGCAATGCCTCATACTCAAATAAGGGTACCTTAACCTCCCACATGCGACATGAGTGCGGTCGTTCCTTATCATGCCCACACTGCGGAAAAATTATTTCGAGGAAAAACAACCTATTGAAGCACATGAAGCATTATTGTAGGAAATCAACGAAAGATACTATTGTTTCGTGA
- Protein Sequence
- MNEGSFGLKYTLDWDTCKYCGRIYKEGHHLVRHIRYHCYRNPNLAQKISMPFVCHTCNAAFTTKYKLISHMRHDCGQNILDDHKCQYCGRFYEKRQHVVNHMRHHCNFNPELSHRTPKPFMCQTCNGSYSNKDTFIYHVRYNCGNTFGWNSCKYCGKTYEQHRHLSKHMRHHCDLNPNLANKTPKPFVCPTCNGSYTKESNLRHHMRYDCGRSHPCPYCGQIVLQKRNLYAHIKQNTFDWNECNYSGKTYNQPHNLSEHMRHHWHLNPDLAGKTPKPFFCTTCNRSYSNKGSLNYHKRHDCGQNTIDWNRCKYCGKTYNQPHNLAKHMRHHCHLNPDFARKTPKPFVCTNCNGSYSNKENTFDWNRCKYCEKTFNQPHNLAKHMRRHCKMNPDLAHKTSKPFVCPTCNTSYSKKFKNTFDSNRCKYCGKTYYEPRHLSNHMHHHCDLNPDLAHKTSKPFVCPTCNNSYSTKKNLMFHIRHDCGRSHSCPHCGKIILAKSNLIKHIKRYCKKLKETHENKNTFDRNRYKYCWKKYERPTHLVQHMRYHCHLNPDLAHKTSKPFVCPTCNISYSHEFSLISHIRHDCGRSHSCPHCGKIILLKSKLLAHIKQNISDRNRCKFCGKTYSRTRYLANHMRHRCYLNPDVAHKTLKPFVFPTCNASYTKNMFDRNRCNYCWKKYERPRDLSNHIRHYYNSNPDSAIKSHRPFVCLTCNASYSNEKETVDWNCCKYCGKTYNRPTYLANHMRHYCNLNPDVARKTLKTFVCPVCNASYFNNSSLLYHRRHNCEYTFERNTCKYCWKKFERPGDMFRHMHHHCKLNPDKTEKTARPFVCSNCNASYSSKRSLSSHMRYDCGRSYSCPNCAKKNTVDRNRCKYCWKIYERPCDMARHMLHHCSWNPDKTDKTTRPFVCSNCNASYSNKKHLMFHIRHDCGQNAFEWNRCKYCGKTYDRLSYLTNHMRYYCNLNPDVAHKKPKTLKPFVCPTCNASYSMKFNLNAHMQHDCGRSHSCPHCENAFDWNRCKHCGKSYSRPSYLANHMRYNCNLNPDVANKTPKPFVCHTCNASYSNKGTLTSHMRHECGRSLSCPHCGKIISRKNNLLKHMKHYCRKSTKDTIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -