Prob029813.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- -
- Assembly
- GCA_028476575.1
- Location
- CM052018.1:31987670-31994000[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6 1.5e+04 -2.4 0.0 29 41 248 260 246 262 0.77 2 2 7.3e-16 1.7e-12 48.7 0.0 2 42 296 337 295 340 0.94
Sequence Information
- Coding Sequence
- ATGTACATCAACGAAATTGAAGAAGGAAATGTGCAAATACTGGCTCTTATGCTCATTCCTTTGCTTATGAAAACTGTGCCCTTGAAAACGACTCCACATTTTCGTCCTGCGAGAGAACAAGTCCAGAAAAATTTCGTCCTTCATATCAGTGACATATGTTACATCGGCGCGGCCTTGGATGAAAGAAGAAAGTTTTTGCAGGATTACAAATTGTCGGATCACCCGGTCCCAGTGATCGTTGGTTCCATGAACGAAATAAAATCGACTTACATTATTTACAAAGAAGCAGAATATTTGATGGAATCGCCTTTGAAAGCCATCGAAACATGCTTCCAATTGTTTTTCGCCCACAATGCCGAGTATCCGAAAATTTCGGAACACATTTGGCTCTTTTTTGAGAAATACATTTTCAATATCAAACGACCTTACGTACCGAATTACGTAAGCTCTAATGCTCTCGCTTCGGAATTGGGCTTGTCATCTGACATCAGTCTTACCTTGGCAACGGTCCCAAGAGTTCATCTTTGTTACTTTTCTGGCGCCTCACAAAACATAAGATTGCAATGGACAATAATGGAGCACACATACCCGCGTTTCGCCCTGACCTCGTGTCATACGAATTTGTCGATCCAATCTCCGCCAGGTCTGACGTCCCCGGAAATCGGGGTAACAAACCTTGCCGAGCAGTACGGCGCTTCGGTCAACGCCGCAAATTGCGCCCTATCGAATTACCCGGGCTCGCCCCACTCCACGATGCAACAGGCCCTTTCCCTGGGAATGTCATCGGTGAACCAGCAACAGCAACAGCAGTGCCAGAGCACGAGCCCTTGTACCAGCCCCCAACAAGTGACCATCAAACGCAAGCGTTCGACAAATCCCCAGGCTGACGAAAACTTCATCCGTGCTTTGGACGCTGTGCGTTACGGTGGAATTGGATTCTGCAAAGCCGCCAGGATGTTCGGTGTCAACAATCGCACACTTTGGCTAGAGTATAAGAAACGCGGCTACCCGAACAACAGGCCCAGCCTCAAGTCCCGGGTCAAGGTTGAGACCTTGAACCCGTCCACGTCTCCCCCTCCCGCTAGCCTCAACAGCAATTCCAACAGCGGGGCCTCGGCGTCCACGGCCGCGGTCGTAGACCCCCAGAGTCCCACGGGGCCCATGGGCCCGCCCGCAGTCACGCCCCAAAATGCCCATACAGGTCACACTACCCTTAACATGCTCTCGGCCCATACTTCCCATGGGATGCTGAGTGGTTATCTGGACACGAGGCATAGCGACTACAGCTTGCAAAGCCCTGCTATGCCCATCAATTTGCACGGGGTCAATTACAGCGCTCTTTGA
- Protein Sequence
- MYINEIEEGNVQILALMLIPLLMKTVPLKTTPHFRPAREQVQKNFVLHISDICYIGAALDERRKFLQDYKLSDHPVPVIVGSMNEIKSTYIIYKEAEYLMESPLKAIETCFQLFFAHNAEYPKISEHIWLFFEKYIFNIKRPYVPNYVSSNALASELGLSSDISLTLATVPRVHLCYFSGASQNIRLQWTIMEHTYPRFALTSCHTNLSIQSPPGLTSPEIGVTNLAEQYGASVNAANCALSNYPGSPHSTMQQALSLGMSSVNQQQQQQCQSTSPCTSPQQVTIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKVETLNPSTSPPPASLNSNSNSGASASTAAVVDPQSPTGPMGPPAVTPQNAHTGHTTLNMLSAHTSHGMLSGYLDTRHSDYSLQSPAMPINLHGVNYSAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -