Prob001575.1
Basic Information
- Insect
- Platygaster robiniae
- Gene Symbol
- lov
- Assembly
- GCA_028476575.1
- Location
- CM052029.1:8567614-8575236[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-17 1.2e-13 52.3 0.0 1 44 435 478 435 479 0.96
Sequence Information
- Coding Sequence
- ATGTCGAGCACGGCGGAGAGCCCCGACGGGATGGCCCACAATTCCcattactccctgagatggaacaaccaccaagcccacatcctgcaggccttcgaggcccttctccaggcggagattctcgtcgacgtcaccctcgtctgcaccgagaacagcctcaaagcgcataaagtcgtcctcagcgcgtgcagtcccttcttcgagaggatattcgcggagcacccatgcaagcacccggtgatcgtgctgaaagactaccctgggcgcgagatcgccgcgctcatcgacttcatgtaccgcggggaggtgcgcgtgggccaggaggacctcccaggcctgatgcgcgccgcagagaacctccaggtccgtggcctggcGACCTCCCAACCGCGCCCGGCGAGTCCCCCGGTGACCCCGAGCACGGACCATCTCCTGGACAACTCGACCCCGGAGCTAGCTCGCCACCCGAGCACCCCGGAAACGATGGACGACACCCCGGACAGTCCCCGACTACCATCCCGACTGCCGCACATGCCCCACCTGAATTTCGGACTCCGGGATCACCTGCAGGACTCGTGCGTCTCGCCCCTGATGCCCCGAAGGAAGCAGGCTCGGCCCCGAAGAAGATCCGGCGAACTCGTGCCCCAGGACCTCAGCCGGTCACACCGACCCCCCAGCCTAAGCCCCCCCGTGAATCTCAGCCACAACCCCCGCACCCCGCCCTTCGTGCCCCCTCCGCAAAACCAACCACCCCTCGAGGAAGTCGCGGAAAATCTCTCCATAAAGCGCTCATCATCCCCGGAGTATCCGCCCGTGAAAACCGAGAGCGAGTGCGCCAGCAGCCCGAGGACATCACCGCCGATCATGCAGACGGAGCTCCCGGAGCTTCCGGGTCTTCAGGGCCTGCCGCCCCAGCACCACCAGAGCGAGTACCTCGCGAGCTTGAACCAGCTTGCGGCCCAGTGGCTTCCAGGAAACGAGAACAGTCCAAGGGCTCCGCCCCCCGGACCCCCGCCGCCGCAGCATCCCTTTCCCCATCGGCAGTCCGAGTCACCCTTGGGCCGAAGACCGGTTTTCTCTTTGGAGCCGTTGTTCTCGTCGCCGGTGATGGACTTCCAGCCGGACCCTTTGGGGTTTCTCGGGGTACCAGGGATGCCAGGGAATCATACTCCGGGGAAGAAGCCGAAGAAGCACAGGAACGAAGACGGTACCCGTAGATGGGACCAAGGCAGGGGAGTGATACCCCCTGGCAGGCCCAAGGGCCAGCACAGCGCGCCAAGGGGTGGGCCCCCGAGGTCCTGGACCAACGGCGAGCTCACGCAAGCGCTGCAGCATGTCTGGAACAAGAAGATGACGACGTCACAGGCCAGCAGGGTGTTTGGCATACCGTACAATAGTTTGCTGATGTACGTCAGAGGGAAATATGGAAAGAGCTTGAAGCTGGAGCAGCTTAAGAAGGACTGCACTGGGGCCAACGCTGGTGAGGTCATGAACTCTTTGAACAATAATGTGAAGAACGCAGCTCCTCCGCCGCAGCTTCCACCGCCGCCGATTCCTGGTCTTGGGCATCCTGAAGACTCGCCGTTTTCGCATCATCATCTTCTGGGGGGCAATTTGCCGCAAGGGTTCTTTCCGGATTTTGGGCCTGGTTTTCCGGTGCCGATGAACATGATCCATCATCTGCTGCCGGGGGCAGAGCAGAAGATGTTCGGCGAACAGAAGGCGTTCAACGAGCAAAAGGTGTTCAGCGACGGGGGAGACATTGGGCTGAGGAGTCGCACGCCTTCGCCCACGAGGCACAGGAATAATGACCAGGACTCACTGTCCGTGCCACCCGCGACGCTGCTGCAGCAGAATGGATCCGATTAA
- Protein Sequence
- MSSTAESPDGMAHNSHYSLRWNNHQAHILQAFEALLQAEILVDVTLVCTENSLKAHKVVLSACSPFFERIFAEHPCKHPVIVLKDYPGREIAALIDFMYRGEVRVGQEDLPGLMRAAENLQVRGLATSQPRPASPPVTPSTDHLLDNSTPELARHPSTPETMDDTPDSPRLPSRLPHMPHLNFGLRDHLQDSCVSPLMPRRKQARPRRRSGELVPQDLSRSHRPPSLSPPVNLSHNPRTPPFVPPPQNQPPLEEVAENLSIKRSSSPEYPPVKTESECASSPRTSPPIMQTELPELPGLQGLPPQHHQSEYLASLNQLAAQWLPGNENSPRAPPPGPPPPQHPFPHRQSESPLGRRPVFSLEPLFSSPVMDFQPDPLGFLGVPGMPGNHTPGKKPKKHRNEDGTRRWDQGRGVIPPGRPKGQHSAPRGGPPRSWTNGELTQALQHVWNKKMTTSQASRVFGIPYNSLLMYVRGKYGKSLKLEQLKKDCTGANAGEVMNSLNNNVKNAAPPPQLPPPPIPGLGHPEDSPFSHHHLLGGNLPQGFFPDFGPGFPVPMNMIHHLLPGAEQKMFGEQKAFNEQKVFSDGGDIGLRSRTPSPTRHRNNDQDSLSVPPATLLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01215179;
- 90% Identity
- iTF_01214205;
- 80% Identity
- iTF_01215179;