Pors031831.1
Basic Information
- Insect
- Platygaster orseoliae
- Gene Symbol
- -
- Assembly
- GCA_030522825.1
- Location
- JAPYZL010109918.1:64000-80293[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.026 5.8 9.2 3.7 2 21 12 31 11 32 0.96 2 22 0.03 6.9 8.9 2.6 1 21 48 68 48 69 0.95 3 22 0.00029 0.066 15.3 0.6 1 21 75 95 75 96 0.95 4 22 0.18 40 6.5 8.3 1 21 102 122 102 127 0.94 5 22 0.38 86 5.5 2.6 1 21 139 159 139 160 0.94 6 22 0.0071 1.6 10.9 7.5 2 21 171 190 171 191 0.95 7 22 0.42 97 5.3 1.9 1 21 207 227 207 228 0.95 8 22 0.0022 0.51 12.5 2.0 1 21 240 260 240 261 0.96 9 22 0.0014 0.31 13.2 1.0 2 23 268 290 268 290 0.97 10 22 0.009 2 10.6 2.4 1 21 353 373 353 374 0.94 11 22 0.00011 0.024 16.7 2.4 1 21 418 438 418 438 0.96 12 22 0.00062 0.14 14.3 3.1 1 23 450 473 450 474 0.96 13 22 0.017 3.9 9.7 0.5 1 21 482 502 482 503 0.95 14 22 0.0032 0.73 12.0 0.3 1 21 598 618 598 619 0.95 15 22 0.1 23 7.3 1.0 1 23 627 650 627 650 0.96 16 22 0.048 11 8.3 1.5 1 23 677 701 677 701 0.96 17 22 0.00028 0.065 15.3 1.5 1 19 727 747 727 750 0.95 18 22 0.0049 1.1 11.4 3.9 1 23 757 780 757 780 0.98 19 22 0.085 19 7.5 2.5 1 21 808 828 808 829 0.96 20 22 0.27 61 5.9 0.4 1 23 844 867 844 867 0.78 21 22 0.0022 0.49 12.5 0.2 1 20 922 943 922 945 0.94 22 22 0.048 11 8.3 6.1 1 23 953 977 953 977 0.98
Sequence Information
- Coding Sequence
- ATGTATGTTACAGACGGAGCTAGTTTTCTCAATAAGTGCAAGTACTGTGCAAACAATTACAAAAAGCACAGCGACCTGCAAAATCACATGCGTCATTATTGCCGCTGGAATTCCAGCTACTTGCAAAAACCACTTCGGAAGTTTGTGTGTACTTCGTGCAGAGCATGTTACTCAAACAAACGCAGTTTGAGCACGCACTTAAAGAACGATTGTGGACGTTACCATTCATGTCCATACTGTGAAAATACTTTCAGCCAACTAATTGGTCTTCGAAAACACATGCAACAAAACGTGACTGTTGTTCACGAATGCAGGTACTGCGGAAAATCTTATACGGCGCTTTGTCACCTTGTTACCCACTTGCGACATCTTTGCAACCATAATCCCAACATTGTCAAGAAAAAACTTCGGCCTCATGTGTGTGCCTCGTGCAGCTCATCTTACTCGAAGAAGCACACTTTGAACTCTCACTTGAAGTACGATTGCGGACAAGGCGAGAGTTTGGTGAATAGCTGCAAGCATTGCGGAAAAACATACGAACACCTTTGTCATTTGGTCACCCACATGCGTCATAATTGCCTCTGGAATCCTAATGTTATTCGCAAAAAAGATCGGCCTTTCATGTGCACTGTGTGCTGCGCCTCGTACTCAAGCAAAAGGAAGTTGGTCTCCCATTTGCGATACGATTGCGGACGAACGAAGCGGAAAGTAATGAGCTTCACTTGCACGGAGTGTGACGTTCATTTCAGTGACAAGTATGGCATGAACTACCACATCAAGCATAATTGCGGAATTTTACGGAAATGCAATTACTGTGGGTCATCGTACAAAAGAATTCAGGACATTCGCGTTCATATGAAGAAACTGCATCCGAATTTAGAGTGTAGTTTTACTGTTCATCTTTCGTTCGTCGACAGATTTGGATTCATGGATTCCAATACTTTCCCGGGCCGGGAAAGTTTCGGAAATTACGAGGCACTTTATGCCGCGAAAAACTGGGCCGTCGAGGGCTCGATGCCGATGGGTCATATTGACAAGCGGTCCATCGTCCATCGCTACGAGTGTTCGAAATGCAAGAGAAGTTACAAGAATCTCCATGACGCAAGAAAACACGAGAAGAATTGTTTGTTGCCTCCTTCGATAGAAAATTGCCCACCGATGGCGGTGTTCGGAATTTACGACAAGATTCCCAAGTTTACGGAGTCTTTCGTCGTGCCGAAAGCTACCGGGCAATCACATTTAATCGGGACGTTTCCATGTCCGCATTGCCCGAGCGTCTTTAATCGAAGATGCAATCTACGGAAACACATAAAATGCGAATGCGTCGCGACAAATCCAAACCCAAGATTTAAATGCCCATATTGCGACCACCGCTCGAAAAAATCATCGAACATACGGGCCCACGTTCGCGCGATTCATCATCCTCTTGGTTTTGCGAAGCCTTACGTTTGCAACAAATGTTCAAGATCGTACCGAGGGAAGAATGGCATGTTGATTCACCAAAAGTACGCTTGTGGTCGAAGagAACCGAATTTTCTGTGTTCTTACTGTAATTATCCGAGCAAATGGAAGGGCGACGTGGTCAAACATTCTTATCGAAAACACCCGAATATGCCGCCCAGCGTAATCAGTTTGCGAGATTTTTCTGCAGTAAACAGACCGGTGCCTACTGTCTTTGAGTTTTTGAGAAACCATCTTGCGAATTTTTTGTCGGCTTCGTATCGAGGGGGCTTCGGGACGCGAAGGCAGCGAAGTGTTTACGGCAAGAAAACAGACGCTGACGGGAACTCGTTCCCGTGCCCTAGCTGCCCCAGCGTCTTTCGCCATAAGCCAAATTTACtgtatcatttgaaaaatcaatgTGGCCAACCCAATAGGTTCGCTTGCCCATTTTGTAGTTACAGGGCAAACCACGTGTCTAACGCTCGCGCCCACGTGCGCAGAAAACACCCTGGTAATGCCGTTTACACCATCGACATTTGCAAGTTTCATTTGCGAAATCAATTGTGCGATTCTGAGAGGCCGCGTTTCGCGTGTCCTCATTGCGAAGTTTTCGTGACCCGTCATCCTTCAAATGTTCGAGCCCACGTGAGACGTCGGCATCCTGGATTTCCGGTTTATGTGGTCAATCAGTACAATCCCAATTACGGTGAAGGTTATTACGTCGACGATAAAGCCTATGTCTGCCCAAATTATGGCTGCAATCGAAGATTCAAATTCCAAAGAAACTTGAAGAGACACTTCAGTAATTGCGGATGGATTCCACGGTTCAAATGTTATTATTGCAACCATCAGAGCAAAGCGAAATACGACCTGCAAAAACACATTCTCACGTTGCACAGGGatCCGTTGAATGTGGGTCATGAAGTTTACTTGTCGGAGGCAAATTTTAATAACGGAAAAAGCACTGGGGCTGATTCTTATCGCTGCGAGCGGTGTTTTAAAGGATACATGCATTATGGGAGTTATACGAGACATGTTCGatacgAATGCAAAGAACTAGGAAGCGGCACGGAACACACTCGAAAATTTAAATGCCCGTATTGCGATTACTACTCCTCAAGGTTAAATGCAGTTCCTGGCCACATACGTAACAGGCATAAAGGCCAAGAAGTGTTCGCCATCAACAGTGTTTCAGGCGAAAAGGCCTTCATAAAACGCCGACATAGCAATAAACGCAATGcacatgaagaaaaaataacCCAAATTGTCGTGACCCAGTTTTGGAGCCAGCCTGAAAACTCGAATCACCAAACGAACTTGTTTTATTGCCCGAACGTTGGGTGCAACAAGTCCTTCAGGTGGAAAGGCAACTTGAACTCGCATTTGGAAAACATTTGCGGTATCAAACCGAGATATAAATGTCCTCATTGCGACCAGTATCGCTGCAAAGTGAAATCGGATGTTCGCAAaCACATCAAGAGAAGACACGCGGATCAAGAAATTTACGTGTTGGATTTATTCTCATCGTGA
- Protein Sequence
- MYVTDGASFLNKCKYCANNYKKHSDLQNHMRHYCRWNSSYLQKPLRKFVCTSCRACYSNKRSLSTHLKNDCGRYHSCPYCENTFSQLIGLRKHMQQNVTVVHECRYCGKSYTALCHLVTHLRHLCNHNPNIVKKKLRPHVCASCSSSYSKKHTLNSHLKYDCGQGESLVNSCKHCGKTYEHLCHLVTHMRHNCLWNPNVIRKKDRPFMCTVCCASYSSKRKLVSHLRYDCGRTKRKVMSFTCTECDVHFSDKYGMNYHIKHNCGILRKCNYCGSSYKRIQDIRVHMKKLHPNLECSFTVHLSFVDRFGFMDSNTFPGRESFGNYEALYAAKNWAVEGSMPMGHIDKRSIVHRYECSKCKRSYKNLHDARKHEKNCLLPPSIENCPPMAVFGIYDKIPKFTESFVVPKATGQSHLIGTFPCPHCPSVFNRRCNLRKHIKCECVATNPNPRFKCPYCDHRSKKSSNIRAHVRAIHHPLGFAKPYVCNKCSRSYRGKNGMLIHQKYACGRREPNFLCSYCNYPSKWKGDVVKHSYRKHPNMPPSVISLRDFSAVNRPVPTVFEFLRNHLANFLSASYRGGFGTRRQRSVYGKKTDADGNSFPCPSCPSVFRHKPNLLYHLKNQCGQPNRFACPFCSYRANHVSNARAHVRRKHPGNAVYTIDICKFHLRNQLCDSERPRFACPHCEVFVTRHPSNVRAHVRRRHPGFPVYVVNQYNPNYGEGYYVDDKAYVCPNYGCNRRFKFQRNLKRHFSNCGWIPRFKCYYCNHQSKAKYDLQKHILTLHRDPLNVGHEVYLSEANFNNGKSTGADSYRCERCFKGYMHYGSYTRHVRYECKELGSGTEHTRKFKCPYCDYYSSRLNAVPGHIRNRHKGQEVFAINSVSGEKAFIKRRHSNKRNAHEEKITQIVVTQFWSQPENSNHQTNLFYCPNVGCNKSFRWKGNLNSHLENICGIKPRYKCPHCDQYRCKVKSDVRKHIKRRHADQEIYVLDLFSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -