Pors030945.1
Basic Information
- Insect
- Platygaster orseoliae
- Gene Symbol
- -
- Assembly
- GCA_030522825.1
- Location
- JAPYZL010106700.1:27665-33586[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0027 0.63 12.2 0.3 1 23 566 588 566 588 0.98 2 16 0.098 22 7.3 0.3 3 19 596 612 594 615 0.91 3 16 8.7 2e+03 1.2 0.6 2 23 621 642 620 642 0.94 4 16 0.005 1.1 11.4 0.7 3 23 651 672 650 672 0.97 5 16 0.015 3.4 9.9 2.6 1 23 679 702 679 702 0.92 6 16 0.00011 0.026 16.6 0.8 1 23 708 731 708 731 0.94 7 16 5.6e-07 0.00013 23.8 3.6 2 23 765 786 764 786 0.97 8 16 1.6e-05 0.0036 19.3 0.3 1 23 792 814 792 814 0.99 9 16 0.00026 0.06 15.4 2.3 2 23 826 848 825 848 0.95 10 16 0.1 23 7.3 0.7 1 23 854 877 854 877 0.94 11 16 0.0091 2.1 10.6 0.8 2 23 908 930 907 930 0.93 12 16 0.0014 0.32 13.1 1.4 2 23 937 959 936 959 0.96 13 16 0.00014 0.032 16.3 0.7 2 23 967 988 966 988 0.94 14 16 0.0056 1.3 11.2 3.1 1 23 994 1017 994 1017 0.95 15 16 3 6.9e+02 2.6 3.2 2 23 1024 1045 1023 1045 0.96 16 16 0.003 0.68 12.1 2.2 1 23 1051 1073 1051 1073 0.98
Sequence Information
- Coding Sequence
- ATGGCCTCCAATCCGCTGACCATTAATGAAAATGACCTTTCAACCTTCCTCGTtttcaacaacaacaacaacaatgcTGGAAACAAAAGCCGACAAGCCGGTCTTCAAATGGGTACCACATTTCCCACGTTTATACAAACCAGCAAACCTGTCATCTCGAGACAAGTAAAAAACATCAGCGAGTTGAAGAAACTCACTCCAGCCATCAAACTCATGGGCCCAGAAAATGCGAATCTTGTTGACCCCCAAAAAATGAGTCCCGAAATTCGAGGGGAAATGAGGAAATTTTGCCGTGCCTGCGCAGGAATGAAGACCCACATGGTCGACATTTTTAGCGAAAAAGGAATGCAAATGAGATTGAGTCAAATGATGTCGCACTTGGAGGACGTTGACGAAAAAACAAGCTTTAGTACTCTGCTTTGCATGGAGTGCATTTACGACTTGAAAGGCAGTTACAAGTTTTTTCTGCAAATCAAAAAGGCTCAGGTCAAGCTCAAGTCGATTCACATGAAAATGGCTGTGGTGGCAGAAAAACCTGTCGGCTTGCAGAGTTTTGGCAATTTGCAAGATTCAACGAACTCTGAAGACCATAGTTATTTCGAGCCATTAAAAATGGCAACAACGACAACCAAAGAAGAAATCATTACCATCGAACCCAAGGGAACAGAGTTCATTGAAGAATTCGACCCCGAAGATGCGCAATTTTTACCTAAATCCGAAAAAACCCAAGATCAAAAAACATGGCCAGTAAATCGCAGTAAAAGGCCCACAATTCTTGGCGGCGAGGTAAAAAAACCGGGCATCAAACTGAAAAGTCCGTCGAGTGTTTCTAGCACGCAACCTGAAATAGGATTCGTAGAACCAACGGCAGTTGTAGAATCCGCGGATTCAAATTCCAAGGGAAACAAAGAGAATTTAAAGCAAGAGgtaaaagaagaaaaacaagAGGAAAATAAGGTGAGCCCTACGGAAACAGACAAAGGAATAATGTACGTCACTATGAAAGGATCAAAACCCAACGAATTGCTTCTTGTGAAAgtaaaaaaaatgGACAAATCGAGCGAGACAAATGTCCAAGACAGCCAAATGGACCCTTCGAAAGTCTCCATCGACATCAAGGCCATGAAACCCATAGGGAAATTTCTCTCTCGCTACGATTCTCTCGTGAGAGACAAAAGCTTGTTCCCCGTGAAAATTCCCAGCGAACGAGAACAAAAAATCAACCAACAAATCGAAGATTACAAAAAACTTCGGGAACAAGTTCTCGGTCGAACAGAGCCCATCGCTCAACTCTCTTTGGTTTTACCGGAGCCCAAAAGCAACGACGGCGAAATAAAACTGAAGATGGATTTCAAAGAGAATCCTTATTTCTCGTGCAACATGCAACAAGACATTGTTTTTGACCAGAAAATTGACGACATGGCCACGATTTCGAATGACAGCAATGGGGTACTTATTAAGGAAGTTCGTTACAACAACAAAACTTGGAAAGAGGAAAAAGTCGATGACGGAGTTTGCCTAACTCGGATCATTCAAGCAATCAATGACAGCACTTGCGAGAAAAATGTGAAAGAGTTTTTGGAGTACCTGAAAATTCGACGAATCGTCGTGTCGAGGCTGAAAGACGAAGACATCGTTGGCCTTTACGACGCCAAGTACAGGAAAGACGGGGCTTGCTTCAGAGACAAAAACCTTTTCGAGTGCGATTTTTGTTGGGAAATTTTCACGCTGAGAGACAAGCTGAGGGAGCATGAAAAAGTTCATGACTTCAAGATGATGTTGTTTTGCGATGATTGCGGGGAGGAATTCCCAACGAATAAGATGAAGAGGAATCATAATACGAGTTGCAAAGAAAAGCTTGTGTGCAGGTACTGCCTCGAGGTGTTGGAATCGAGGGGGAAGAAACGACAGCACGAGCAAAAGCACTGCGACAACGAGGACGGTCAGTTGTGCGACGTTTGCGGGGAGAAGTTGAAGCACCAGGGCACCCTGGACCAGCACATCAAGATCCGTCACATGGATTTGGAGAAGATCTTCCAGTGCCACATCTGCCCTAAGAAATTCGCTTTGAAAACGAAGCTGAGCTTCCACGTCAAGTCGGTGCACACCGAGATCCGCGCGTTCCTCTGCGAGGACTGCGGGGCGGATTTCAAGAATCCGGCGAGCCTGCGGCACCATCGCATCAGGAAACACCAGCCCGAGGGCAGCTTAAGGGAATGCCCCGTTTGCGGCAAGCTCGTAGCGATTTACAGTATTTCCAAGCACATGCACACGCACAGGGATTTCAGTATCAAGTGCCCGCATTGCGACAAGAGCTTCAAGAACACTTCGACCTTGAAGCAACACACTCGAATCCACGACGACGAGAGGCAGTATCGCTGCGATACTTGCGGGGTCGGCTTCAATCGCAGGGATGGTCTTCGCTTGCATACGAGAGTTCACGAGAATACCAACAGTCGGGCGCTCAAGGAGTGCTCCTGCCAGATTTGCGGGGAAAAATTCCCGAACCACTCGACCCTGGTGATTCACAGGAACCGGGCGCACAAGGGCGGCAGAAGGTTCACCTGCAGGATCTGCAATAGGTCCATGATCTCGGCCACCTCCTTGAGTCTCCACCTGGAGCACATCCACAACAGGACGGCCGAGTATCATTCCGAGTCCGGCCAGCAACAAGCTGGCAGCGAGGCCAAGGTCGACGGAGACGACATCCGTCGACGGGTCATGTGCTACCAGTGCGGCAAGACCTTCAAGACGGAGATGATCCTGAGGACGCACGTCAAGAACACTCACACGGAGAAGAAGCCGATGAAATGCCTGGACTGCGACGTGTTCTACACGTCCAAGGTCAGGCTCAAGCACCACATGATGGTCGAGCACAACAGACTCGAGGGGACCTTGGAATGCCCGCATTGCCCCAAAAGATTCGTCAATCAGTTGAGGCTCAAGACCCACATGGTCGCGCATTCCGAGGAACGACCCCACAGCTGCGACATCTGCGGCTTTCGCTTGAAAACGAAAATCCAGCTGATGAAGCACAAGCAGAACAAACACAGCGACGCGCGACCTCTGCAGTGTCGCTACTGCGCGTGGCGCTGCAAGCAGGTCAGCGCTCTGGTTTGTCACGAGCGCACGCACACCAACGAGCGCCCGTACGTGTGCCAAGTGTGCAAGCAGCGCTTCAAGTACCTCGGCGACAAGAACAAACACGAGCGCCGGCACGTTTCCATGGGCGGCGAGGGCTTCAAGAGGACCGTCGCCGGTACGGGCGGTCCCGCTGTTTTCGACGTCAAGCCAATGCTCAAGCAGGAAAACCACGACAACTCGAAAAGCGACGACGAAGTCGAGGAAACCGGGTTGATCGACGACGACCCCGCGAGGATCATCAAGTTCGAGACCCAGGAACTCGTTGATGAGAATGGTCAGACTTACCAGGCGGCCTACCTCGAGCAGGGATACGAGTCAGGTTCCGAGGAAGCTTTTGAAACGCGCCAAGTCATCATGAACGTCGACCCAAATGGCCAAATTTACGCGCAACAAGTTTCAGGGGAGACGATCGAAATCGAGAACGCCGAGTCCCCGGGAATGATCACGAGCGACCTCATGGAGTCGCATACGGTTTTTCAAATTCAGCCAGTCTACGAAAACGGCGAGTACAAGGAGATACCAGTCATCATGCTGCAAAGTTTGGACGAGGCCGGTTCGGATGTTGATCTTTCCAACGCCTCCATCACGCTTTGA
- Protein Sequence
- MASNPLTINENDLSTFLVFNNNNNNAGNKSRQAGLQMGTTFPTFIQTSKPVISRQVKNISELKKLTPAIKLMGPENANLVDPQKMSPEIRGEMRKFCRACAGMKTHMVDIFSEKGMQMRLSQMMSHLEDVDEKTSFSTLLCMECIYDLKGSYKFFLQIKKAQVKLKSIHMKMAVVAEKPVGLQSFGNLQDSTNSEDHSYFEPLKMATTTTKEEIITIEPKGTEFIEEFDPEDAQFLPKSEKTQDQKTWPVNRSKRPTILGGEVKKPGIKLKSPSSVSSTQPEIGFVEPTAVVESADSNSKGNKENLKQEVKEEKQEENKVSPTETDKGIMYVTMKGSKPNELLLVKVKKMDKSSETNVQDSQMDPSKVSIDIKAMKPIGKFLSRYDSLVRDKSLFPVKIPSEREQKINQQIEDYKKLREQVLGRTEPIAQLSLVLPEPKSNDGEIKLKMDFKENPYFSCNMQQDIVFDQKIDDMATISNDSNGVLIKEVRYNNKTWKEEKVDDGVCLTRIIQAINDSTCEKNVKEFLEYLKIRRIVVSRLKDEDIVGLYDAKYRKDGACFRDKNLFECDFCWEIFTLRDKLREHEKVHDFKMMLFCDDCGEEFPTNKMKRNHNTSCKEKLVCRYCLEVLESRGKKRQHEQKHCDNEDGQLCDVCGEKLKHQGTLDQHIKIRHMDLEKIFQCHICPKKFALKTKLSFHVKSVHTEIRAFLCEDCGADFKNPASLRHHRIRKHQPEGSLRECPVCGKLVAIYSISKHMHTHRDFSIKCPHCDKSFKNTSTLKQHTRIHDDERQYRCDTCGVGFNRRDGLRLHTRVHENTNSRALKECSCQICGEKFPNHSTLVIHRNRAHKGGRRFTCRICNRSMISATSLSLHLEHIHNRTAEYHSESGQQQAGSEAKVDGDDIRRRVMCYQCGKTFKTEMILRTHVKNTHTEKKPMKCLDCDVFYTSKVRLKHHMMVEHNRLEGTLECPHCPKRFVNQLRLKTHMVAHSEERPHSCDICGFRLKTKIQLMKHKQNKHSDARPLQCRYCAWRCKQVSALVCHERTHTNERPYVCQVCKQRFKYLGDKNKHERRHVSMGGEGFKRTVAGTGGPAVFDVKPMLKQENHDNSKSDDEVEETGLIDDDPARIIKFETQELVDENGQTYQAAYLEQGYESGSEEAFETRQVIMNVDPNGQIYAQQVSGETIEIENAESPGMITSDLMESHTVFQIQPVYENGEYKEIPVIMLQSLDEAGSDVDLSNASITL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -