Pors048122.1
Basic Information
- Insect
- Platygaster orseoliae
- Gene Symbol
- -
- Assembly
- GCA_030522825.1
- Location
- JAPYZL010166523.1:1-3860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.059 13 8.0 1.4 1 23 1 23 1 23 0.97 2 20 7.1e-06 0.0016 20.3 1.3 3 23 61 82 60 82 0.96 3 20 9.6 2.2e+03 1.1 0.5 1 23 116 139 116 139 0.82 4 20 0.0054 1.2 11.3 1.9 2 23 146 169 146 169 0.94 5 20 1.4 3.2e+02 3.7 0.0 2 23 178 200 178 200 0.84 6 20 0.035 8.1 8.7 0.0 2 23 207 229 206 229 0.93 7 20 3.8e-06 0.00087 21.2 0.7 1 23 237 259 237 259 0.98 8 20 0.76 1.7e+02 4.5 0.8 2 23 293 316 292 316 0.93 9 20 0.0088 2 10.6 2.6 1 23 319 342 319 342 0.97 10 20 0.00098 0.22 13.6 0.8 2 23 349 371 348 371 0.95 11 20 0.00076 0.17 14.0 1.8 2 21 399 418 398 419 0.95 12 20 0.0012 0.27 13.4 1.8 2 23 433 454 432 455 0.93 13 20 0.11 25 7.2 1.1 1 23 458 481 458 481 0.94 14 20 0.0077 1.8 10.8 0.3 2 23 488 511 487 511 0.92 15 20 0.43 97 5.3 0.2 2 23 519 541 519 541 0.95 16 20 1.6 3.7e+02 3.5 0.0 2 23 548 570 547 570 0.87 17 20 0.1 23 7.3 2.7 2 23 579 601 579 601 0.96 18 20 0.27 62 5.9 1.4 2 19 607 624 607 629 0.91 19 20 0.001 0.24 13.5 0.1 1 23 683 706 683 706 0.96 20 20 8.5e-05 0.02 17.0 0.6 1 22 729 750 729 750 0.95
Sequence Information
- Coding Sequence
- TACAGCTGTTCCATTTGCGGAAGGCAACAcgattccagaaaaaaattgataacccACGTATCGATTCATAACATCGATCCCAGTTACGATCCAGCGGCGTTTGTGCAactcaatgaaaatttgaacgACTTGAACGAGCAGTTTTTCGAGCCTGAGGCAGAAGAGGGAGAAAAAGTTGACTGCAGCATGTGCTCGAAGTCGTTCCCTACAGAGGATCATCTCATTCGGCACCAGAGAAACGCTCACAGGGCTGAAAACGTGGTTCCAAACGGAGACCCAGGAAATCAAAGCGTAAACAGTCCAAACGTCGGTGGAAACGTTAACAAACCGCAGTACCACTTGATTTTCCTATGTGAAATTTGTGGAAGTTCGCATTCCAGTAAATGGGACAGATGGTTGCACGTCAGTAGAGACCACAGCGACGAACCGTCGAATCGATGTGAACGCGAGGACTGCGGAAAAATCTTCGCCACGAAATCCTTGCGCAACGACCATACGCAACACCATATGGTTCAGGGCAGTTCGCCTAATACCTGCGAAATATGTGGAAAATTGTGGGGAAGTCGCGTCGACTACTGGAAACACGTAATGGGCGTTCACTCGGACACGGTGCCATTGATATGCGGCGTTTGCCTTAAAGTGTTCCCGAGCGTGCAAGAGCTCAGCGCCCACGTGAAAGCCAAACACTGGCCCTTGACCAACGGCGACTTCAGCTGTGACATTTGCGGCCGACCCTACTCGAACAAGTCCAAAATGGCGAGGCATCGAAAAATTCACGGCCTCGATGTAGATTTCCACGGCGCAACGACGACCAACAACGAAGCCAACGAGGCGAAGGTGAAGATGGAGTACCACGTGCCCGAGAACATCGACTTGACTTGCGACTTGTGCAACGACGTCAAGTTCGCGAGCGCGGAGGAACTGTGTTATCACAAGAAAAAAGCTCACAGTCAGTTCCCTTGCGACCTTTGCATCAAGTGCTACGGCCGAACGTCGCACTTGTGGAAGCACGTGAATCGCGTTCACAAGGGCCATAAAGACGTGACCTGCCGATTTTGCAACAAGACGAGCGCCTCGCGGGATCACTTGGCCGCGCACATCGCGAAATTGCACAGATACGAACCGGACGCGAAGCGCGAGATCCAAAACGTTCGCCATAAGAAGATGCCTAAGGAGGAAAGCGAGGATTGCTTGAGCTGCCCGAAATGCCAAAAACTTTTCCACAAGCGTTACCTTCTGCGTCGTCACATGAAGGGATGCCAGATTTACAGGAAAGATCCCGGCGCCTTGTTGACTCGCTGTCGGGCGTGCGAAAGGATATTTAAAGACCGCGCGAGTCTTCAAAAGCACATTGAGAACCATCACACCTCGTACACGTGTCACTTGTGCGACGAGACCATCACTTCGAAACTCGGCATCATGACCCACAATCGCGTCAAGCACATGGCCCATCCCGATTTGACCTGTGAAATTGGCAATTGTCGCAAGTTGTTCCGCACTAAAGCCGACCTCGAGTCCCATCGCATCGATCACAGCCATCACCCGATGCCCAACGTCTGCGATTTCTGCGGCGACACGGTCGAGAACAAGCTCAAACTGAAAATGCACATACTCTCGTTGCATCGCAACGAGATCGGCGTTTCATGCGGCGTTTGCCTGATACCCATGAAGGATCCTAAGGACCTGAAAAAACACGTCGAGGACGTTCACGCCAGTATCCTCTTGAAACCCAATACATGCCAAGTTTGCGGCAAGCAGTACGCCTCGAAATGGAAAGCCTTCGATCACACGAAAAAATGCCACGGCAAAGTTTTCCGCACGTGCAAACAGTGCTTGGCGGTTTTCACCACTGATGACGATCTCAGGTCGCACTGCCTGAACATCCATAACGTGACTTCGGAGCAGTTGGCGTTGTTCGAGAATCGCGATGGCAAGCACGACGAGTATGGGTTGAAGCAAGAAGGCATGGACGACATGGACTTTTACGAGGACTTGTACGACGTGCAAAAGTCGAAGGGAAAGAAGAAGAAGAGGCCCACGGACACTTACGACTGCGAGATTTGCCCGGAGATGTTTTTGAACGAAAGCACCCTCGAAGCGCATTACAGAAACGTTCACAACATTGAGCCACTTCACCGACTGAAGAAAGCCAAACTGGCCGATAGCAAAAAACGCAAGAGTAATTTCGAGTGCAAGTCGTGCAACAAGCTTTACACTACAAAAGCCAATCTCTGGAATCACATGAGCACCTGCACCAAAGTCCCCCAAACCCACGAAATCAGTAACGATTACCCGTCATCGATCCTGGAGGCACACCTGAAAAACAACAACCAGATCAAGCAACACGATAAGTCCTTGGCGGATGAGACTATCCTCAATGAGTCGAACTTGAATATACCTGATTTCAATCTCTTCGAAGATATCAACATGCAATTGTCAGGACAAAAACCTGTGCCAAACTTGATGCCTCTGAAAATGGCAAAACGCGAGCAAATGAATATTTCCAATTCTAGCGGTGAGTTTTCATTTTCCTCGAAAGCATTGGTCATTGATTTGAACTAA
- Protein Sequence
- YSCSICGRQHDSRKKLITHVSIHNIDPSYDPAAFVQLNENLNDLNEQFFEPEAEEGEKVDCSMCSKSFPTEDHLIRHQRNAHRAENVVPNGDPGNQSVNSPNVGGNVNKPQYHLIFLCEICGSSHSSKWDRWLHVSRDHSDEPSNRCEREDCGKIFATKSLRNDHTQHHMVQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPSVQELSAHVKAKHWPLTNGDFSCDICGRPYSNKSKMARHRKIHGLDVDFHGATTTNNEANEAKVKMEYHVPENIDLTCDLCNDVKFASAEELCYHKKKAHSQFPCDLCIKCYGRTSHLWKHVNRVHKGHKDVTCRFCNKTSASRDHLAAHIAKLHRYEPDAKREIQNVRHKKMPKEESEDCLSCPKCQKLFHKRYLLRRHMKGCQIYRKDPGALLTRCRACERIFKDRASLQKHIENHHTSYTCHLCDETITSKLGIMTHNRVKHMAHPDLTCEIGNCRKLFRTKADLESHRIDHSHHPMPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHASILLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTTDDDLRSHCLNIHNVTSEQLALFENRDGKHDEYGLKQEGMDDMDFYEDLYDVQKSKGKKKKRPTDTYDCEICPEMFLNESTLEAHYRNVHNIEPLHRLKKAKLADSKKRKSNFECKSCNKLYTTKANLWNHMSTCTKVPQTHEISNDYPSSILEAHLKNNNQIKQHDKSLADETILNESNLNIPDFNLFEDINMQLSGQKPVPNLMPLKMAKREQMNISNSSGEFSFSSKALVIDLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -