Pors003162.1
Basic Information
- Insect
- Platygaster orseoliae
- Gene Symbol
- -
- Assembly
- GCA_030522825.1
- Location
- JAPYZL010010379.1:1-7967[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.42 97 5.3 1.5 1 23 41 63 41 63 0.96 2 19 0.037 8.5 8.7 0.5 1 23 112 134 112 134 0.98 3 19 0.00086 0.2 13.8 0.1 1 20 180 199 180 201 0.93 4 19 0.16 37 6.6 2.0 1 23 213 236 213 236 0.94 5 19 3.6 8.3e+02 2.4 0.2 2 19 242 259 241 260 0.92 6 19 0.00057 0.13 14.4 0.6 1 23 283 305 283 305 0.97 7 19 8.8e-05 0.02 16.9 0.2 1 23 311 333 311 333 0.98 8 19 0.00013 0.029 16.4 0.4 2 22 362 382 362 384 0.89 9 19 0.00064 0.15 14.2 1.0 2 19 450 467 449 472 0.89 10 19 0.00023 0.053 15.6 0.4 1 23 482 504 482 504 0.93 11 19 0.063 15 7.9 0.0 2 19 545 562 544 563 0.95 12 19 0.011 2.5 10.3 0.1 2 23 584 605 583 605 0.96 13 19 0.18 40 6.5 1.0 2 21 620 639 619 640 0.91 14 19 3.6e-05 0.0082 18.1 0.4 1 23 661 683 661 683 0.93 15 19 0.19 44 6.4 4.4 2 23 707 729 706 729 0.95 16 19 0.00066 0.15 14.2 0.6 1 23 757 780 757 780 0.93 17 19 0.00019 0.043 15.9 0.0 1 23 833 858 833 858 0.91 18 19 0.081 19 7.6 2.2 1 23 863 886 863 886 0.91 19 19 0.073 17 7.7 0.8 2 23 918 940 918 940 0.94
Sequence Information
- Coding Sequence
- aacgAGAACATGGAAGATGATGTGGAAGCAGTTGAAGATGTTGAGGAAGAGCTTATGAATATGGAAAAAGATGCAACCCTGACTCAAGTGCAGCAAAATATCATAAGTCAGCTGAAAACCTATTCTTGTTACCCGTGTAAGCAGTACTTTGAGGATCGCCGCAGCACTTTGAACCACATTAGGATGCACATGCCAGACTTGCGACCTTATACTTGCATTGCCTGCCTTATGGAATTTGGCGACCGTACCATGTACAAACAGCACTGTAACGAGTCTTTCGAATGCGCTACAAAAATCGCCCTGGTAGTGCCTAAATTCGGTGTCGAGAAGTACTTCACGTGCAACATGTGTCTGCGACCAATGGCCAATCGGCAGGAACTTTTAAATCATCTGCAGAAGCACTCGCAATACGGACAAACAAGAGCCGCAACGGTGGATAAAAGCGCTACAGTGAACACGACTCTCGTGAAAAATGTAGCAGCATTTTCCACTATGGATGTACCTTGGCCTTTCGAAGGTGGCAATCCAAAACACAATCATCCCTGTGACCTTTGCGGCATGATATACAAACGTTTGCCCAACCTGGAGAGACATCGCGAAGTTTGTCTGGCCTTGAAACCAGAGGCACGTGTATCGTACAGATGTGTACACTGCGGCCTGTCATTCTTGGTTTTCAAGAAATTCACGAATCACGTCATAACGGAACACAAGAAACGCAAGATCACTTGCCATTTGTGCAGTGACATCTTCAATACTCCCGAAGAATACTTGGAACATAACGTTTGCCATAAAGGCACTGGCGGGGGCGCCGTTGTCAACGGCAGTACTTTCAAAGATGAGCATAATTTCCCCTGCGCTCTCTGCAGTGAATCCTTCACGAATCACACCGATCTTGCCGAGCATCGTAACCTTCACTTGAAGGTTAAGATTTACTCTTGCGTCATATGCCGCTGCATGTTCAGCAGCGCTGCTGCTTTGGAAGCTCACATGAATGAACACGGTGTTCGAAAGCCCGCAGACGATGACATGGGCTCACCTAGGGTCCTGAAACGATCCCATTCGGACCTATTAAAACTCCGAGCCAAGTGCCCCGATTGTGATAAGACATTCGCCAACATTAACAACGTCAAACGTCACGCGAGCGACTCtcacaatataaaatattacaccTGCAACTCTTGCTGTTTATACTACAAAAAAAGGGAGGAACTGGAAGAGCATTACAGCTATACTTGCATGTTTTATTTGTACAGGACCCACCATGAGCAAACCTTTGTAGAAGAAACTTCCGTCACCTCTTATACGGAATCATTGACGCCAAAAAGATTTGCCAAAAAGCCTCTGCTACAGTGCCCTAAGTGCCCTAAAACTTTCACTTATCCTGCCTATATGAACCAGCACTGCATTTCTGTCCATGGCGTGAACTACAACGAAGGAGGCACTTTCGAGTGTAATATTTGTGAAAGGAAATTCAAAGAGGAGAGCTCCCTGAACGTGCACAAGGGCTGGCACGTGCGGTTTGGCAACACTCGAGTCGGTTTGGACACTTCGCCTCAGCCTAACAGCCCGTCGAAACCTGCCACGGCTAGGAAATCATTCCCGAAGCCATCGTTAAGCCTGGAAAAAGAGATCCAGTGCCAGGTTTGCGACGACAGTTTTGCGGACGTCGCAGAGCTCAGGAAACATGTCTGGAACGTGCACTGCTCACAGACCGCCAAGCAGGAGAAGCCATTTTTGGAAAACGAATTGCAGTGCGATCTTTGCACGAACGTGTTTATGGACGAACGCAGCCTCGAGGAACATATGACGTGGCACAATCACAATCCCATTCTTGCCGGTTCGCAGAGCAAAAGCGTGCGTTGCGAACCTTGCGGTCGAACACTGAGCGACCGCAAATCCTTGCACCAGCACAAAAAATTCGAATGCGGTAAAACACAGGCACTGATGGCAATCGAAGAGCCATTGCAAATCAAAGGCATGTTCATGTGCAAGATCTGCAGCAAGGGATTCGCCAGTGCCACAAACTTGAAGAAGCACAACGTCGTGCACCGCGAGGACTTTGCGAAGACTAAGAAGGAGGTCGTGGATACGAATACTACGGTCAAAAAGAAGTTCGTAAAGTGCCACACTTGCTACAAGACGTTTATGAATATGCGAGTTCTGTATCACCACAGACAGATAGTGCACGGCAGTCAGAATTCACTGAAGAAGGGGGGCAAGGCTCAGGACGTCCCTGTCCTGATTCCTCAGAATGCTGCTAACGGATTTTTCAAATGCAATCTTTGCGAAAAGTCTTTTCCATCTTTGGCACCTTTGAGACAGCATTTCACCATCAAGCATATCAAAACGCATCAACAGGCTGTGGGTCAGAACCAAAGTTCAATGCTTCAACTTTCATCCTCGTCAATGTCTACGTCGCCCAGTCGACCGCCAACACTGTCGCCACAAAACGTGCAACCGAAAATGCCTAACTTAAGCGGCTTTGGGCATACGGCATTTATCTGCCCAGTTGCGACTTGCGGAAAATCTTTTCCTTCTAATGATGCCTTGCAACTTCATGAAGAAAACAGTCACACCAATGTCCTGTACAGTTGCAATCTGTGCGAACGCCATTATTTTAACAAATCGACCATCGTGAAGCACGTGGTGAACACGCACAAGGCCGTCAGTCAGGCCAACGGAAACAAGGACAACTTTTTTATGGAAACCGACCTCACGACGTACGAAATCGCAGGCCTAAGGCACAATCGTGAGTGCCCACGCTGCAAAGTCAAGTATCCGAATACCAAGGCCctgaaaattcactattttAAATTCCATGAAAGAGGAAACTGA
- Protein Sequence
- NENMEDDVEAVEDVEEELMNMEKDATLTQVQQNIISQLKTYSCYPCKQYFEDRRSTLNHIRMHMPDLRPYTCIACLMEFGDRTMYKQHCNESFECATKIALVVPKFGVEKYFTCNMCLRPMANRQELLNHLQKHSQYGQTRAATVDKSATVNTTLVKNVAAFSTMDVPWPFEGGNPKHNHPCDLCGMIYKRLPNLERHREVCLALKPEARVSYRCVHCGLSFLVFKKFTNHVITEHKKRKITCHLCSDIFNTPEEYLEHNVCHKGTGGGAVVNGSTFKDEHNFPCALCSESFTNHTDLAEHRNLHLKVKIYSCVICRCMFSSAAALEAHMNEHGVRKPADDDMGSPRVLKRSHSDLLKLRAKCPDCDKTFANINNVKRHASDSHNIKYYTCNSCCLYYKKREELEEHYSYTCMFYLYRTHHEQTFVEETSVTSYTESLTPKRFAKKPLLQCPKCPKTFTYPAYMNQHCISVHGVNYNEGGTFECNICERKFKEESSLNVHKGWHVRFGNTRVGLDTSPQPNSPSKPATARKSFPKPSLSLEKEIQCQVCDDSFADVAELRKHVWNVHCSQTAKQEKPFLENELQCDLCTNVFMDERSLEEHMTWHNHNPILAGSQSKSVRCEPCGRTLSDRKSLHQHKKFECGKTQALMAIEEPLQIKGMFMCKICSKGFASATNLKKHNVVHREDFAKTKKEVVDTNTTVKKKFVKCHTCYKTFMNMRVLYHHRQIVHGSQNSLKKGGKAQDVPVLIPQNAANGFFKCNLCEKSFPSLAPLRQHFTIKHIKTHQQAVGQNQSSMLQLSSSSMSTSPSRPPTLSPQNVQPKMPNLSGFGHTAFICPVATCGKSFPSNDALQLHEENSHTNVLYSCNLCERHYFNKSTIVKHVVNTHKAVSQANGNKDNFFMETDLTTYEIAGLRHNRECPRCKVKYPNTKALKIHYFKFHERGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -