Pors026489.1
Basic Information
- Insect
- Platygaster orseoliae
- Gene Symbol
- -
- Assembly
- GCA_030522825.1
- Location
- JAPYZL010091426.1:4759-15223[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.6e-05 0.0037 19.2 0.3 1 23 144 167 144 167 0.95 2 13 5.3e-07 0.00012 23.9 0.9 2 23 181 202 180 202 0.97 3 13 1.2e-06 0.00027 22.8 0.3 1 23 296 318 296 318 0.98 4 13 0.0021 0.49 12.6 0.5 1 23 324 347 324 347 0.97 5 13 1.4e-05 0.0032 19.4 1.4 1 23 372 394 372 394 0.97 6 13 5.6 1.3e+03 1.8 0.3 2 20 411 429 410 432 0.87 7 13 0.0013 0.31 13.2 0.8 1 23 439 462 439 462 0.96 8 13 0.00035 0.081 15.0 3.3 3 23 471 491 470 491 0.95 9 13 0.089 20 7.5 9.2 1 23 497 519 497 519 0.98 10 13 0.0097 2.2 10.5 0.2 2 23 525 546 525 546 0.96 11 13 4.9e-06 0.0011 20.9 0.4 1 23 555 577 555 577 0.98 12 13 0.00037 0.084 15.0 0.2 1 23 583 605 583 605 0.97 13 13 3.2 7.3e+02 2.6 0.1 3 12 613 622 611 623 0.89
Sequence Information
- Coding Sequence
- ATGGACATAAGTAGTGACGAAATGTCAATGCAATGGGTGGGAACGGTGGAGGACGTGATCCAGGAGGAAGTGATCGAAGAACTGGTCACAACGGAAGAAGTGGTAGAGGAAGAGTACCAGGAGGAGATTGTGGAAACCATGATAGATGGTGCCCAAGGAAACGTAGAACAAGAGATCATGATGGTTCCAGAAAGCAATGATATCGAAGAATCCATATACGTCGTGTCACAAGATCAAGAACACGATTATCTGGATATTTCCGAAGTCACGGAAGAAGTCGTTGCCGATAGCTGGGATCGATCTGGAGGACATGACGAAGGGCTTCAGATGCAAATTTCGAATGTGTCACATGAGAGTGTCATCGATTACGAAGGCATGGACATGACGGTGCCCATCCGCGAACAAGATTCGTACGCTCTCACGCGTCCCTTTCCCTGCGAGTTTTGCAACAAAAGATTCTCCAGGGTCGCAATGTTAGAAAATCACATGATCCAAGAACACCAAAAGCCACGGCCCACGGAAATGTTGGGCGGAGATATCCCGTGCAACATGTGTAATAAGAGATTCTCCCGTCGCGCTGATTGGCAGAACCACATGAAAACGCATGCCCGGCGTCACGCTGAAGACGAGGAGCTCACGGAAGCCATGATCCTGGAGCGTGAACGACAAGAGCGCAACAAAGGTCGTCGAAAAAAGCCGGCATCGCCAAGAAAACGCAAGAGCAGCGTCACATCGAATCGCATGTCGCAGCATCAAGTTAAAATAGAGGTTCCGCGCTATATGTCAAAATCTTATGATTACGCCGAAGAAGAAGCTCGTCTGGTGGAAGAAATGCCACCTGAAATACCGGAGCAGCGTTTTGCTATCACCGATGCTACCAGGCCGTACGTTTGCCAAAATTGCGGCAAAAGTTTCGCACGTGAAAAGGCTTTACAATCGCACGCTCGATTGCACGTTGAATACGGGGCTTACGAATGTCGCAAATGCGACGATATATTCTCAGATATGAGTGCTTTGCGTGAGCATAACAGGATGCGCCactctgagatttaccaaagtGTGGAATCCCATGATTTCGACGACATAGATTACCAAGCTGAACAATATTCAGCACATTACTGCGACATTTGTGGAGCTGAGTTCTCAAAAATAGAGCAACTGAAACGACATCAAAAgAGTCACATTAAAGACGAAGAATCCCATCTAATAGATGGCCTAGAGCAACGGCAAGTCTGCACTGTTTGTGGAGATCAGTTTGATTCTGATTTGGCTCTTTTGGCGCATCAAGCTTGTCATGCaagCAAAACCACACATCATCGTTGCTTGGATTGTGGCGCCCGATGTCGCGACGAAGAGGAACTTATTGAACATGTCAGGGAGAATCACCCTGAGGATGAAAATCCTAACATGTGCACCAATTGTGGAAAAACCTGCAAGGATAAGCGTAGTTTGTTGAAACATGCCACGGTCCACAGCAACGACAAAGTCTTCACTTGCACCAAATGTTGCAAACAATTCCACAGTCAAACTCGATTACGCAGgcACATGATGTCTCATAGAGACAAAATGGCGGTTTGCGAAGAATGTGGTGCCAAGTTTCCAGACGGAAGAGCCTTAGTTAGTCACCGTCACTCTCACAACAAAGAATTGGCAGGTCGAACATTCCCTTGCAAAGAGTGCGGAAAAGTGTTTGGAAGTCGCAGCTCACAGCAAATACACACTCGCATTCACACGGGCGAGAAACCGTACGCGTGTCGATTTTGCTGGAAAGCATTCGCCGATGGCGGCACATTGAGAAAGCACGAACGTATTCATACAGGGGAAAAACCGTATGGCTGCGCTATTTGTCCCAGGGCTTTTAATCAAAGG
- Protein Sequence
- MDISSDEMSMQWVGTVEDVIQEEVIEELVTTEEVVEEEYQEEIVETMIDGAQGNVEQEIMMVPESNDIEESIYVVSQDQEHDYLDISEVTEEVVADSWDRSGGHDEGLQMQISNVSHESVIDYEGMDMTVPIREQDSYALTRPFPCEFCNKRFSRVAMLENHMIQEHQKPRPTEMLGGDIPCNMCNKRFSRRADWQNHMKTHARRHAEDEELTEAMILERERQERNKGRRKKPASPRKRKSSVTSNRMSQHQVKIEVPRYMSKSYDYAEEEARLVEEMPPEIPEQRFAITDATRPYVCQNCGKSFAREKALQSHARLHVEYGAYECRKCDDIFSDMSALREHNRMRHSEIYQSVESHDFDDIDYQAEQYSAHYCDICGAEFSKIEQLKRHQKSHIKDEESHLIDGLEQRQVCTVCGDQFDSDLALLAHQACHASKTTHHRCLDCGARCRDEEELIEHVRENHPEDENPNMCTNCGKTCKDKRSLLKHATVHSNDKVFTCTKCCKQFHSQTRLRRHMMSHRDKMAVCEECGAKFPDGRALVSHRHSHNKELAGRTFPCKECGKVFGSRSSQQIHTRIHTGEKPYACRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -