Pors031828.1
Basic Information
- Insect
- Platygaster orseoliae
- Gene Symbol
- -
- Assembly
- GCA_030522825.1
- Location
- JAPYZL010109918.1:51898-59306[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00016 0.037 16.1 2.1 1 21 22 42 22 43 0.96 2 23 0.00081 0.19 13.9 3.1 1 21 49 69 49 74 0.94 3 23 0.0012 0.28 13.3 10.7 1 23 86 108 86 108 0.97 4 23 1.3 3e+02 3.8 1.3 1 21 123 143 123 144 0.90 5 23 1.1e-05 0.0024 19.8 2.1 2 21 155 174 154 175 0.95 6 23 4.3e-05 0.0099 17.9 5.1 1 21 208 228 208 229 0.96 7 23 2.3 5.3e+02 3.0 1.7 1 21 245 265 245 266 0.95 8 23 0.0001 0.023 16.7 0.8 1 21 272 292 272 293 0.93 9 23 0.0024 0.55 12.4 1.2 3 23 309 329 308 329 0.91 10 23 0.00021 0.049 15.7 0.1 1 21 345 365 345 366 0.96 11 23 2.2e-05 0.005 18.8 1.2 3 21 374 392 372 393 0.92 12 23 4.5e-05 0.01 17.8 0.1 1 21 428 448 428 449 0.96 13 23 7.1e-05 0.016 17.2 3.1 3 21 457 475 455 476 0.92 14 23 0.0016 0.36 13.0 0.5 3 22 500 519 499 519 0.95 15 23 3.2e-05 0.0074 18.3 0.8 1 21 534 554 534 555 0.96 16 23 8.1e-06 0.0018 20.2 0.1 1 21 609 629 609 630 0.97 17 23 4e-06 0.00092 21.1 0.9 1 21 636 656 636 657 0.94 18 23 1.2e-05 0.0029 19.6 2.4 1 21 663 683 663 684 0.97 19 23 0.0013 0.3 13.2 0.4 1 21 699 719 699 720 0.95 20 23 0.00058 0.13 14.3 0.9 1 20 726 745 726 747 0.94 21 23 0.008 1.8 10.8 4.1 1 21 753 773 753 774 0.97 22 23 0.00091 0.21 13.7 0.8 1 21 790 810 790 811 0.95 23 23 0.0041 0.93 11.7 0.5 1 21 817 837 817 838 0.94
Sequence Information
- Coding Sequence
- ATGAATCATATGCGAAATTATTGCATCTGGAATCCCAATACTGCCAACAAAAAATTTCGACCTTACGTGTGCCATACGTGCAATGCCTCGTACTCTAGTGAATATCACTTAACCTCGCATTTGCGATACGATTGCGGACGTTCTCATTCATGCCCACACTGCGGAACAATTTTCAAGCTAATTCGTAGCCTTAACAGGCACATTAGGGGTCCTTGCAAGCATCTGGTTTCTGTTGCAGAAGGTGCTACTTTATTACATTACTGCAAGCATTGCGGAAAATCGTACGATCACCTTAATCACTTGGTCATCCACATGCGACATCATTGCCAGTGGAATCCTAGCAATTTCAACAAAACACCAAAGCCCTATGCGTGTTCCTCATGTAGTGCGTCGTACATCCATAAGTCACATATGCTCTTTCACATTCGATACGATTGCGGGCAGCAAGTGACCAAGATTTTGGAATGCGAGTACTGTGGAAAAACGTACGGGCACTCTCATCACTTGGTCAAACACATGCGGTATTTTTGCATCTGGAATCCCGAAGTTGCCAGCAAAACAAATCGGCCCTTTAAGTGTTCCTCGTGCTGTGCCTCGTACGCAAGATTCGTGACTGAGATTTTTGAATGCAAGTACTGCGGAAAAACGTACGAACACTCTCATCACTTGGTCAAACACACGCGGTATTTTTGCATCGGTAATCCCGAAGTTGTAAGTAAAACGAACCGGCCCTATGTGTGTTCTTCGTGTTTTTCCTCGTACTTGAATAAAAGGGATTTGACATCCCACTTGCGACATGATTGTGGACGTGATCATCCATGCACGGTTTGCGGGAAAGTTTTCTTACAAAAATCCAGCCTTCGAAAGCACACTCAGAATAAATGCGGACAAGACAAAAAACAGTTCGAAACTTCTCAGAACAACTGCGAGTACTGCGGTAAAACGTACCAGCACTATGGTCACTTGGCCATTCACGCAGCCTTTCATTGCAAGAGGAATCCCGGCGTTGTGCATAAAAGTAAGAAACGGCCTTTTGAGTGTTCCTCGTGCGGCGTCTCATATTCAAATGAGTCGACTTTACGAGCCCATGTACGAGACGATTGCGGACGTTCCCATCTGTGTAAACACTGCGGAGcaattttcacacaaaaatcCGCCCTGCGCAGGCACATAACTCGTTCTTGCAGTGCAGTTAAAAATGCTGGAGAAGAAATAAGggaagaaaaCCACATGCGAAATTATTGCATCTGGAATCTCAACGTTGTCAGAACATCTCGGCCTTTTCAGTGTTTAACGTGCGGAGTCTCGTATTCGAGTGAGTCGAATTTACGAGCCCATGTACGAGACGATTGCGGACGTTCCCATCTGTGTAAACACTGCGGAACAACTTTCACACAGAAAGCTAGCCTACGCACGCACACCCAACGTTATTGCGGGAAAACCAAAACATTAAAGAACAAATTAGGAAAGAAAAAGAGTTCAGGTTATTCGAAAATCTGCAAGTTTTGCGGGAAATATTACGAGCATTCCGCTTACTTGGTCAGCCACATGAAACGTTATTGCATCTGGAATCCCAACGTTGACAACTCATCTCGGCCTTTTCAGTGTTTAACGTGCGGTGTCTCGTATTCAAGTAATTCGAATTTACGATCCCATGTACGACACAATTGCGGACGTTCCCATCCGTGTGAACACTGTGAAGATCCGGGTTTTTCGAATAATTGCAAGTTCTACGGAAAATATTACGAGCGTTACACTTACTTGGACAACCACAAGCGATATCATTGCAGCTTTAATCCCAACATTGTCAAATCATCTCGGCCTTTTCAGTGTTTAACGTGCGGCGTCTCGTATTCAAGAGAGTCGAATTTACGAGCTCATATACGAGACAATTGCGGACGTTCCCATCCGTGTGAACACTGcggaaaaatttatacagaaaaatccAATCTACGCAAACACATCCTTCAGGATCCAGGTTCTTCATATACCTGCAACTTCTGCGGGAAATCTTACAAACAGCGTTTTCATTTGGTCAGCCATATTCGAAATTATTGCATCTGGAATCCCAACGTTGTCAAATCATCTCGTCCTTTTGTGTGTACTTTGTGCACAGTATCTTACGCAAGCAAATACTCTTTGAACGCTCACTACAAATACGATTGCGGACGTTCCCatatgtgtccatattgtggAAACATTTTCAGCCGAATAGCTGGCCTTCGTAAACACATCCATCATGACGCTAGTTCTCTCTATACGTGCAAGTACTGTGGAAACAATTACACAAAGCGCAACGAAATGCACAACCACATGCGGCATTATTGCCGCTGGAATCCCAGCTACTTGAAAAAACCACTTCGAGAGTTTGTGTGTACTTCGTGCAGAGCATCTTATACAAACAAAAGTTCTTTGAACTCTCACTTGAAATACGATTGCGGACGTTGCCATTCATGTACATATTGTGGAAAcattttcaacagaatgatTAGTCTTGACAGACACATCCAACGTAGTTGCATAAAGTTTAAAGAAATCAAGAATAAATGCTCCGATACAGATTAA
- Protein Sequence
- MNHMRNYCIWNPNTANKKFRPYVCHTCNASYSSEYHLTSHLRYDCGRSHSCPHCGTIFKLIRSLNRHIRGPCKHLVSVAEGATLLHYCKHCGKSYDHLNHLVIHMRHHCQWNPSNFNKTPKPYACSSCSASYIHKSHMLFHIRYDCGQQVTKILECEYCGKTYGHSHHLVKHMRYFCIWNPEVASKTNRPFKCSSCCASYARFVTEIFECKYCGKTYEHSHHLVKHTRYFCIGNPEVVSKTNRPYVCSSCFSSYLNKRDLTSHLRHDCGRDHPCTVCGKVFLQKSSLRKHTQNKCGQDKKQFETSQNNCEYCGKTYQHYGHLAIHAAFHCKRNPGVVHKSKKRPFECSSCGVSYSNESTLRAHVRDDCGRSHLCKHCGAIFTQKSALRRHITRSCSAVKNAGEEIREENHMRNYCIWNLNVVRTSRPFQCLTCGVSYSSESNLRAHVRDDCGRSHLCKHCGTTFTQKASLRTHTQRYCGKTKTLKNKLGKKKSSGYSKICKFCGKYYEHSAYLVSHMKRYCIWNPNVDNSSRPFQCLTCGVSYSSNSNLRSHVRHNCGRSHPCEHCEDPGFSNNCKFYGKYYERYTYLDNHKRYHCSFNPNIVKSSRPFQCLTCGVSYSRESNLRAHIRDNCGRSHPCEHCGKIYTEKSNLRKHILQDPGSSYTCNFCGKSYKQRFHLVSHIRNYCIWNPNVVKSSRPFVCTLCTVSYASKYSLNAHYKYDCGRSHMCPYCGNIFSRIAGLRKHIHHDASSLYTCKYCGNNYTKRNEMHNHMRHYCRWNPSYLKKPLREFVCTSCRASYTNKSSLNSHLKYDCGRCHSCTYCGNIFNRMISLDRHIQRSCIKFKEIKNKCSDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -