Pors048768.1
Basic Information
- Insect
- Platygaster orseoliae
- Gene Symbol
- lola
- Assembly
- GCA_030522825.1
- Location
- JAPYZL010168544.1:11427-13486[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5 1.1e+04 -2.2 0.0 29 38 148 157 148 158 0.79 2 2 3.9e-10 1.2e-06 29.7 0.0 3 37 304 338 302 338 0.94
Sequence Information
- Coding Sequence
- ATGACTGGAACGCAGTGCAGTTTCCGATGGCAAAACCACACGCAGAGCCTTATCTCGTCTTTCGAGGATCTCCTCAAAACGCAGCTCCTGACAGACATGATCATCGTGCTCGAAGAAGGTCAACAAATCCTGTGCCACAAGGTCGTCCTGGCAGCAGCCTCCAGCTCCTTCCACAGGATCCTCATGAAAAACCCCGAGTCCTCAGCCATCGTGCTCCCGGACATCACGTATAAACAAATGAAGGCCCTCCTGGAATACATGTATAGCGGAAAGGTCCAAGTTTTCGAATCCGAACTCGAAAACCTTCTGCAAATCGCcgaaaaactcgaaatcaaggGTCTCACTCCCAGCACCCGCGATGAAAACGAAAAGGATAAAATCGAAATGACCAGCCCTCCACCTACTGTCAACAGCAGCACCGTCAATACTCGAGATTCTCCACCCCATTCTACCGTGGAAGCCTACTACAAATCCTTGTTTGAAAACCGAAACTTTCCTAACTACCTTCCACCGAATTTTCCATTGATACCGACATTTCCCATGGCTAGTTTGCCGACTTTTAACACGTTCAACGGAGCCAACGACACCGGTggcgttgtaaatttgaataagaaataTGACCAGGAAAATCGGAGTTCGCCCATTTTGAGAACTGTGTTGCACCAGGGCGGCCAAGAGGTCAATTCCTTTTCCCAGGAAGTTTCGGTAAGGTCGCGTAGCAACAGTTCGGCAGATGATTCGGAAAGGCATTCGAGCGTGGACGGATCCCAAGGCGAACCGAGTTTCTACCCAAAAAACAAGAACGAAGCGACTGAGAGAAATCAGATGCAATGTCAATCTTCCGTAGGAAAAACTCcATCTGGCAAGTCCCAAAAGATGGATTGGAAACGTTACAAACAATACAGTTCCGACGATCTCGCCGCCGCAATTAACGctgtaaaatacgaaaaaatgtcAGCGCTCAaagcttcaaaaatattttcggtGCCCAGCAGAACTCTTTGTAAGTGCAAAATTTGa
- Protein Sequence
- MTGTQCSFRWQNHTQSLISSFEDLLKTQLLTDMIIVLEEGQQILCHKVVLAAASSSFHRILMKNPESSAIVLPDITYKQMKALLEYMYSGKVQVFESELENLLQIAEKLEIKGLTPSTRDENEKDKIEMTSPPPTVNSSTVNTRDSPPHSTVEAYYKSLFENRNFPNYLPPNFPLIPTFPMASLPTFNTFNGANDTGGVVNLNKKYDQENRSSPILRTVLHQGGQEVNSFSQEVSVRSRSNSSADDSERHSSVDGSQGEPSFYPKNKNEATERNQMQCQSSVGKTPSGKSQKMDWKRYKQYSSDDLAAAINAVKYEKMSALKASKIFSVPSRTLCKCKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01214160;
- 90% Identity
- iTF_01214160;
- 80% Identity
- iTF_01214160;