Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00036 1.2 10.6 0.0 26 39 2 16 1 20 0.82

2 4 9.2e-13 2.9e-09 38.1 0.1 2 39 32 69 31 72 0.94

3 4 3.2e-19 1e-15 58.8 0.0 2 45 87 131 86 131 0.97

4 4 3.7e-19 1.2e-15 58.6 0.1 1 42 138 180 138 181 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00036	1.2	10.6	0.0	26	39	2	16	1	20	0.82
2	4	9.2e-13	2.9e-09	38.1	0.1	2	39	32	69	31	72	0.94
3	4	3.2e-19	1e-15	58.8	0.0	2	45	87	131	86	131	0.97
4	4	3.7e-19	1.2e-15	58.6	0.1	1	42	138	180	138	181	0.97

Coding Sequence: ACTTTTGGAATCCCATCAACGACGCTTTGGCAACGCGCGCACCGACTAGGAATAGATACTCCAAAAAAGGACGGCCCAACCAAATCTTGGAGTGACGAGAGCTTGAACAATGCTCTGGAAGCTCTCAGGACTGGCACGATATCGGCGAACAAAGCTTCCAAGGCCTTTGGCATACCCTCGAGTACGTTGTACAAAATCGCGAGGAGGGAAGGCATACGACTGGCGGCTCCGTTCAACGCCTCCCCGACGACGTGGTCGCCCGCGGATCTGGACAGGGCACTCGAGGCCATAAGGTCCGGTCAAACGTCGGTGCAGCGGGCGAGTACCGAGTTCGGCATACCCACTGGAACGCTGTACGGCAGGTGCAAAAGAGAAGGCATCGAGCTCAGCAGAAGCAACCCGACACCCTGGAGCGAAGACGCCATGACAGAGGCTCTCGAAGCTGTGAGGTTGGGACACATGAGTATTAATCAAGCGGCAATTCATTACAACCTTCCCTATTCTTCGCTGTACGGTCGTTTCAAGAGAGGGAAGTACGAAGAACCTGTAGGAAATGAAATGTCTCAGGACGGCATGTCAAGTCCGCATTTCCACCAGAGCCCAACTCAGAACCTTTCCTCCTCCATCCCCGATCAAATGCCTTACCAAGGAAGCTGA
Protein Sequence: TFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVGNEMSQDGMSSPHFHQSPTQNLSSSIPDQMPYQGS

Sequence clustering based on sequence similarity using MMseqs2