Basic Information

Insect: Platygaster equestris
Gene Symbol: salm
Assembly: GCA_030522785.1
Location: JAPYZK010005536.1:1758-8386[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.7e-06 0.00054 21.3 0.9 1 23 363 385 363 385 0.98

2 7 7.3e-06 0.0011 20.3 2.1 1 23 391 413 391 413 0.98

3 7 0.046 6.8 8.4 3.8 2 23 748 769 747 769 0.98

4 7 3.2e-08 4.7e-06 27.8 0.6 1 23 775 797 775 797 0.97

5 7 0.0013 0.19 13.3 2.4 1 23 807 829 807 829 0.95

6 7 0.0019 0.28 12.8 2.1 2 23 1128 1149 1127 1149 0.97

7 7 0.036 5.3 8.7 0.9 1 13 1155 1167 1155 1168 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.7e-06	0.00054	21.3	0.9	1	23	363	385	363	385	0.98
2	7	7.3e-06	0.0011	20.3	2.1	1	23	391	413	391	413	0.98
3	7	0.046	6.8	8.4	3.8	2	23	748	769	747	769	0.98
4	7	3.2e-08	4.7e-06	27.8	0.6	1	23	775	797	775	797	0.97
5	7	0.0013	0.19	13.3	2.4	1	23	807	829	807	829	0.95
6	7	0.0019	0.28	12.8	2.1	2	23	1128	1149	1127	1149	0.97
7	7	0.036	5.3	8.7	0.9	1	13	1155	1167	1155	1168	0.94

Sequence Information

Coding Sequence: atgcaACTCATGCGGTGGAGCATTACGAGACGCTTGGACAGCGGCGCGAGGGAGCGCAGAGATGTTAGGGGTTGCAAGAACGAGGATGGACGGAGGATATCGGTGTCCACTTTATCCGGCGAGGAAAATGAGTCGGCATCCGAGGGTGAGGAGAGCGCCCCGGAAGGGGCCGTGGACCTGCGAGCGGCGACGCGTTCCCAGCAGCCGGCGGACGAAGACGAGGAGGAGGCTCCCATGGAGGACGAGGAGGAGGAGCTGGACGACGACGAGGAGGGCTCGCGCAAGCGCATGCACCACCGGCAGGACGCGGAGAACAACAACAGCAGCTTCGTCGCCGAGGGCGCGGCCCTTTTCCCCCCGGCCAGCACTAGTCATGTCACCCTCGAGGCTCTGCAGAACACGAACGTCGCCGTGGCGCAGTTCGCCCCTCCCGCGCCCCTATCCGGCAACCCCGACAGCGACGCCGTGCTCCAGGAGCTGGCTCTGCTCTACACGATCCAGCAGCAGCACCAGGTCTTCCAACTGCAGCTCATCAACCAGATTCAGCAGAAACTGTCGATAAATCAGAGCGGCGGTGGAGGTCCGGCGGGCCAGTCTGAGAAGACCGACGACAAAGAAGGGACAAGAGCCTCGCCAATTTTGACGGCGGCCACGACCTCCCCGAGTCGCCGTCGCTCGGAGGTGACGGCGGCTACCTCCCTTTCCCCTCTGCCCCTGACGACGTCGAGTCAGCCGGTGGCAACCCAAGAACTGGCCGCGACGTCCTCGTCGCCACCCGCGGCGACACCGATCACGGCTCAGCCCGTACCGATATCGCCGATGGCGCACCAGATGCCAGCCATGTGCGGCATCAGCTCGTCCTTCGCCTCATCCATTATCACGAACAACGACCCCCTTCCCCTGCACGAGCCCAACACCCTGGAGATGCTGCAGAAGCGCGCCCAAGAGGTGCTGGACAACGCGAGCCAAGGCCTTTTGGCCAACAACCTCGCGGACGAGCTGGCCTTTCGCCAGCAGAGCAAGGGCTCCCGCCTATCGCCCTACGACTCGAAATCCGGGGGTGGACGCGGCGAACCGTTCTTCAAGCACCGCTGCCGTTACTGCGGCAAGGTCTTCGGCAGCGACTCGGCCCTTCAGATCCACATACGGTCCCACACAGGTGAGCGACCCTTTAAGTGCAACGTCTGCGGAAGCCGCTTCACCACCAAAGGCAACCTCAAGGTCCACTTTCAGAGGCACACGGCCAAATTTCCCCACGTCAAGATGAACCCCAACCCCATCCCCGAGCACCTTGACAAGTTCCACCCGCCCCTACTACAGCAGCTCGCCGCCTCGGGCCAGAGGCCCCTTCCCTCCCCGCCGCCCCCGGCCTTGCCCCCGCTGCCTCCCCAACAACAACCCCCGGGGCAGTTTCACGCGACGCACGCGCCGACGCCGACGACAACGGCCACCACGACGGCGCACCCCTTCCTCCACCAGCCCCCGTCGTCTGTGATGCCACCCCTCAGTCTTGCCATTCCCGGCATGCCAGCCCTCTACCACCGACCACCCCACCTTCTCCCTAACCATCACCGGGACGATCAACAACAAATCCCGGAGAACCTCAGCAAACCCtccaacaacaacaacaacgcCTCCTCGCCAAAGTCACCCCCTCAAAACCAACAAGCCAAACTCGAGATCAAACTCGAGCGGCAGTCGCCATCTCCTCAGAGTGTCACCCCCAAACACGAGCCCGAAGACGTCGAAGAAGACGTTAAGGACGACGAGGGGAAAGACGAAGTCGCGAAGGGTGCCGTCGTTTCCTTCGAGGACTGCAGTATGGACAGCAAGGTCAGCGACGGCGCCGGGGACGTGATGGCGATGATGATGGACGCGGAGGACAACGACGGCGACGAGCAGCCCGAGAACCTCTCGAACCGTCCCAACCGCCCTGTTCCCCAGCAGCAGTTCCACCGAGGTGGCGTCTCGCCGACCAGTAGCAACGCCAGTAACAGCAGTCTCCAAACTAGCTTCGCCGGTATCCTCTTCCCCCAACAGCAACACCCCATCCACGAGCGCGGGGATCCCATGGGCGGCGTCGACCCGGCCCGCGATCCCGCGATCTACTCGAACCTCCTGCCGCGTCCCGGCAGCAACGACAACTCCTGGGAGAGCCTGATCGAGATCACCAAGACCTCAGAGACGTCCAAACTCCAGCAGCTCGTCGACAACATCGAGCACAAACTCACCGACCCGAACCAGTGCGTCATCTGCCACAGGGTGCTCTCGTGCAAGAGCGCTCTTCAGATGCACTATCGCACGCACACGGGCGAACGGCCCTTCAAGTGCAAGATCTGCGGTCGCGCGTTCACCACCAAGGGCAACCTCAAGACGCACATGGGCGTGCACCGCGCGAAACCCCCGATGCGTGTCCTCCACCAGTGTCCCGTGTGCCACAAAAAGTTCACCAACGGGGTGGTTCTCCAACAGCACATATTCCTACACACTGGGGAGCCCACAGACCTCACGCCCGAACAGATCCAGGCCGCCGAGGTCAGCGACTTCCCCCCCGCGGCCGGAGGATCCTACCCCCATCACCTCGCACCTTTCCTACCCCAGGGCTTCCTAGGGCCCGCCGGTCACCCTGGGTTTCCCCTTGCCTTCCCCCCGAGAGCACATTCCCTCGGCGATAGTGACGTAATGCGCCATCATCATCAGCtccagcagcagcaacagcagcaacGGCTGGACTGCGAGAACGAGGACGACGAGGATGACGTGAGACTGGAGGACGAGGACGACGAGCGAAGGGACATGGGGAGCCTGGCGGATGAGGACGAAGACTGCAAGGACCAGGAGGAGATGGGGACGGAGTGCAAGGATACCATGCCTTCGTTCTCGACTTCCCTGGCCGCCCTGGAGAACCAGGTGCGGACCATCACGACCATGGCCTCGCGATCCTCGGCGTCGCCTCCGACCTTGACCAGTCAtcttcatcatcatcattccCATGTACATCATCGGTACAATGGGGGAAGCGATAAAAGCGCGAGTCCACCCAGTAATGGGGCGCCTCTTGACCTCACGCCTCGGGCCTCTTCCACCCCGACTTCGGCACCCTCCACACCCACGCCACCCCCGCACCTTCCAGGCGCGCCTGGACCACCGCCCCCACCCCATCCGTTTGGTGTGTTCGCTGGTTTACTGCAGGCAGCCTCGTCTTCGTCGCCTTCGAGTCATGGACTAGCGAGCAGTGTGACCAACACCGTCGCTCCTATGGGTTCGAGAAATGACGTGGGACCCCTGGCGTCGCTTACTACTTCGGCTGTGCTTGCCGCGACCTCGACCTACAACCCCCTCGGCCTGGCCGTGGGTGGGCCAGCAGTGCGGGGAAACACAACGTGCAACAtctgcttcaaaactttcgcgTGCAATTCAGCCCTGGAAATCCATTACCGGAGTCATACCAAGGAACGGCCTTTCAAGTGCACTATTTGCGATCGGGGCTTCTCAACAAAGGTGATTATGGACATGATTTCTGACGATTCAGGCGTGTCGTGA
Protein Sequence: MQLMRWSITRRLDSGARERRDVRGCKNEDGRRISVSTLSGEENESASEGEESAPEGAVDLRAATRSQQPADEDEEEAPMEDEEEELDDDEEGSRKRMHHRQDAENNNSSFVAEGAALFPPASTSHVTLEALQNTNVAVAQFAPPAPLSGNPDSDAVLQELALLYTIQQQHQVFQLQLINQIQQKLSINQSGGGGPAGQSEKTDDKEGTRASPILTAATTSPSRRRSEVTAATSLSPLPLTTSSQPVATQELAATSSSPPAATPITAQPVPISPMAHQMPAMCGISSSFASSIITNNDPLPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRQQSKGSRLSPYDSKSGGGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPIPEHLDKFHPPLLQQLAASGQRPLPSPPPPALPPLPPQQQPPGQFHATHAPTPTTTATTTAHPFLHQPPSSVMPPLSLAIPGMPALYHRPPHLLPNHHRDDQQQIPENLSKPSNNNNNASSPKSPPQNQQAKLEIKLERQSPSPQSVTPKHEPEDVEEDVKDDEGKDEVAKGAVVSFEDCSMDSKVSDGAGDVMAMMMDAEDNDGDEQPENLSNRPNRPVPQQQFHRGGVSPTSSNASNSSLQTSFAGILFPQQQHPIHERGDPMGGVDPARDPAIYSNLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNGVVLQQHIFLHTGEPTDLTPEQIQAAEVSDFPPAAGGSYPHHLAPFLPQGFLGPAGHPGFPLAFPPRAHSLGDSDVMRHHHQLQQQQQQQRLDCENEDDEDDVRLEDEDDERRDMGSLADEDEDCKDQEEMGTECKDTMPSFSTSLAALENQVRTITTMASRSSASPPTLTSHLHHHHSHVHHRYNGGSDKSASPPSNGAPLDLTPRASSTPTSAPSTPTPPPHLPGAPGPPPPPHPFGVFAGLLQAASSSSPSSHGLASSVTNTVAPMGSRNDVGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICFKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKVIMDMISDDSGVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -