Pequ001085.1
Basic Information
- Insect
- Platygaster equestris
- Gene Symbol
- -
- Assembly
- GCA_030522785.1
- Location
- JAPYZK010000144.1:5148-9093[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0034 0.51 11.9 0.2 1 23 357 379 357 379 0.94 2 12 4 5.9e+02 2.3 1.0 2 21 380 400 379 401 0.88 3 12 1.4e-06 0.00021 22.6 1.3 2 23 471 492 470 492 0.97 4 12 2.3e-05 0.0035 18.8 0.2 1 23 498 520 498 520 0.98 5 12 0.00049 0.073 14.6 3.4 1 23 526 548 526 548 0.98 6 12 0.00011 0.016 16.7 1.5 1 23 554 576 554 576 0.98 7 12 0.00026 0.038 15.5 2.5 1 23 582 604 582 604 0.98 8 12 1.2e-06 0.00018 22.8 1.1 1 23 612 634 612 634 0.98 9 12 0.034 5.1 8.8 1.2 3 23 642 662 640 662 0.93 10 12 2.6e-05 0.0039 18.6 1.9 1 23 668 690 668 690 0.98 11 12 1.4e-05 0.0021 19.5 0.6 1 23 696 718 696 718 0.98 12 12 0.005 0.75 11.4 4.7 1 23 724 746 724 746 0.96
Sequence Information
- Coding Sequence
- ATGGACATCGCCGAGGATTTTGACGATTTGTGCCGGCTTTGCGCCACGAAAACCGGAATCCTCGTGGGACTTGCCATTTTCGAGGCCGCCGGCGAGCAAATACACGACATCGCCAAGAAAATTTCTGTTTGTCTTCCCCTCCAGGTTTCTATGACGGACCAACTGCCAAAAGTAGTCTGTCAAGAATGCGCCTACAAGCTGGACCAGCTGTttgattttcgtgaaaaatgccTGCACACAGAGAACATGTTGATAGAAATGCTCCGCAGGGTAGCGAAAGAGAAAACCGACCCCTTACAACCCATGAACATCgcagtttcggaaaatagccAAGATAGAATGGAACATAGCGACTTGCTGCCACCAACGAGTCTGCAAAACAACAAGAACCATTACAACAGTGTACAAAGTTTGGATGACGACGATGGGGCGACATTGCATTCTGTGCATTCAATGGAAGATATGGATCTGAGTGATGCTGCTGGCCAACAAATTATCATGCATCAAGACATTAGCTCCCAGGACAATGGCATACAAGTTGACGGGATTGACTCTCTGGACAAAAAATCTGTCGATATGAGCTCTGTTGTTCCAATGGCATTGCATCTTGCCGGAGACATGGCTGTAGTGGAAAATTTGTCTGATAACGACACCTTGAGCCAACTAGAAATAAATTATGTCACTCTGATACCCGACGAGGAGCAGAACCAGGCGATGGCCCATCAGTATTATGATAATATCAAATACGACTTGGCTGCTCCAAACAGTAATTACCAAGTCATGCACAAAGTACCCAGGTCGGAATGTATGCCTCATCATCACATTGTCAACAACAATGTTTCTGGTGGGTTCACGGTGATAAGCGTAGCTGCACCGGAAAACGAGCTCGAAATAACCGATCGAAAGGAAATGCATGCTTTATCTCCCGAAATGCACGCTCTACCGTCTACCAGTCAACTGATAATCGATCACGAAAAAGTTGGCATGGAATTCAGTGAGATGGCAAAGAATGCTCTTCTTGAGTCGGCCTTGACGAATTGCACTCTCGACGAGACGGGTGTTCACTGGTACATTTGCCCCTTCTGCAACAAAGCCACCTCCGAAAGGGACAGCCTTTTGTCGCATTTCGAAGAGCATTTTTGCAATTGTGCATGCAATTTGTATTTCACGAGCATCGAGTTGCTCAACGAGCACAAAAAAAGCTGCCAACAAAGCAAAGCTAGTAGTAAATCATCGGCAAGGGTAGTATCTGTCATCgttaaagaaaataaaaaggaaACGGCCATCAATAAACAAGAAAAAGTGGTAGTAGAAAATGTGGCTGTTGCAAATGTGGCCACTGCATCATTATCGGAGCTGCCTGTAGATTCGAAAAAGCAAGCCGCGAGTCGGCAAAAGTGGACACCGAAAGTTTGCAACCAGTGCGGCAAACAGTATCGCACAAATTACAAACTCCAGGAACACATGAGGGTGCACACCGGTGAAAAACCTTATCAGTGTGATAAGTGCGAGAAAGCTTTTCGCAGCAAAATAGGTCTAGCCCAGCACGCGGCGACGCACACAGGTCAATTTGATTTCAACTGCTCGACCTGCGGTAAAGGCTTCCAATGCAAAAGTTACCTTATCGTCCATCAAAGGACTCACTCAACCCTGAAACCCTACACGTGTTCGATTTgcagtcaaaatttcaaaaccaagCAATCCCTAGTTGACCACGAGAACCGCCACAACGGTGTCAAGCCGTTCACCTGCGAAATCTGCGGAAGGAGCTTTATTACCAAAGGCCTGTGCAAGAGTCACGAAAAAACCCATTCGGGCGCCGACAATCGCATTTTCCCCTGCGAGATCTGcaacaaaaaattcgtcagCAAAAGCTACTTGAACACGCATTCGCGCATCCACACCGGGGAAAAACCTCACCTTTGCGAATTTTGCGGCAAGGGTTTTTTGACTCGGGTTGATCTCAAAATCCACTCGACGATGCACACCggggaaaaaagtttcaaatgcGACGTCTGCGGCAAAGTCTTTGCTCGTCGCGCAGCTCTGCGCTGTCACAAAAGGTCCCACACAGGGGAACGACCTTACCGGTGCGACATATGCGGTAAAACGTTTACCCAGTTCAGTCCTATGGCGATCCACAAGCGTTTGCATACCGGGGAACGACCTTACGAGTGCGACCAGTGTGACAAGACTTTCGTTTCACGCTCCACGATGATgtgtcataaaaaaaaacacgctCCGCCAGAAATTGTGGCGTGCAATAAAGCGCCAGCCATTCCTGGGATTCCCGAGGAACCAGAGGAGCCTCAAGAAGGAGAAGAACAGTCTATACTTTCCTAA
- Protein Sequence
- MDIAEDFDDLCRLCATKTGILVGLAIFEAAGEQIHDIAKKISVCLPLQVSMTDQLPKVVCQECAYKLDQLFDFREKCLHTENMLIEMLRRVAKEKTDPLQPMNIAVSENSQDRMEHSDLLPPTSLQNNKNHYNSVQSLDDDDGATLHSVHSMEDMDLSDAAGQQIIMHQDISSQDNGIQVDGIDSLDKKSVDMSSVVPMALHLAGDMAVVENLSDNDTLSQLEINYVTLIPDEEQNQAMAHQYYDNIKYDLAAPNSNYQVMHKVPRSECMPHHHIVNNNVSGGFTVISVAAPENELEITDRKEMHALSPEMHALPSTSQLIIDHEKVGMEFSEMAKNALLESALTNCTLDETGVHWYICPFCNKATSERDSLLSHFEEHFCNCACNLYFTSIELLNEHKKSCQQSKASSKSSARVVSVIVKENKKETAINKQEKVVVENVAVANVATASLSELPVDSKKQAASRQKWTPKVCNQCGKQYRTNYKLQEHMRVHTGEKPYQCDKCEKAFRSKIGLAQHAATHTGQFDFNCSTCGKGFQCKSYLIVHQRTHSTLKPYTCSICSQNFKTKQSLVDHENRHNGVKPFTCEICGRSFITKGLCKSHEKTHSGADNRIFPCEICNKKFVSKSYLNTHSRIHTGEKPHLCEFCGKGFLTRVDLKIHSTMHTGEKSFKCDVCGKVFARRAALRCHKRSHTGERPYRCDICGKTFTQFSPMAIHKRLHTGERPYECDQCDKTFVSRSTMMCHKKKHAPPEIVACNKAPAIPGIPEEPEEPQEGEEQSILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -